RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 CNBD1Q8NA66 436 aa18.84■□□□□ 0.61
TRIM28-209ENST00000597423 UBR3Q6ZT12 1888 aa18.84■□□□□ 0.61
TRIM28-209ENST00000597423 ANKRD36CQ5JPF3 1778 aa18.83■□□□□ 0.61
TRIM28-209ENST00000597423 BCORQ6W2J9 1755 aa18.83■□□□□ 0.61
TRIM28-209ENST00000597423 APBB1O00213 710 aa18.83■□□□□ 0.6
TRIM28-209ENST00000597423 SLC16A10Q8TF71 515 aa18.83■□□□□ 0.6
TRIM28-209ENST00000597423 ANO8Q9HCE9 1232 aaPredicted RBP18.83■□□□□ 0.6
TRIM28-209ENST00000597423 PARP3Q9Y6F1 533 aa18.83■□□□□ 0.6
TRIM28-209ENST00000597423 SCN7AQ01118 1682 aa18.82■□□□□ 0.6
TRIM28-209ENST00000597423 RFX5P48382 616 aaPredicted RBP18.82■□□□□ 0.6
TRIM28-209ENST00000597423 PTPN12Q05209 780 aaKnown RBP18.82■□□□□ 0.6
TRIM28-209ENST00000597423 SF3B3Q15393 1217 aaKnown RBP18.82■□□□□ 0.6
TRIM28-209ENST00000597423 LNPKQ9C0E8 428 aa18.82■□□□□ 0.6
TRIM28-209ENST00000597423 CIAO1O76071 339 aa18.81■□□□□ 0.6
TRIM28-209ENST00000597423 ITGA6P23229 1130 aa18.81■□□□□ 0.6
TRIM28-209ENST00000597423 IL15P40933 162 aaPredicted RBP18.81■□□□□ 0.6
TRIM28-209ENST00000597423 RHPN1Q8TCX5 695 aa18.81■□□□□ 0.6
TRIM28-209ENST00000597423 RGS3P49796 1198 aa18.8■□□□□ 0.6
TRIM28-209ENST00000597423 FAM161AQ3B820 660 aa18.8■□□□□ 0.6
TRIM28-209ENST00000597423 CLASRPQ8N2M8 674 aaKnown RBP18.8■□□□□ 0.6
TRIM28-209ENST00000597423 CDC5LQ99459 802 aaKnown RBP18.8■□□□□ 0.6
TRIM28-209ENST00000597423 GREM2Q9H772 168 aa18.8■□□□□ 0.6
TRIM28-209ENST00000597423 PA2G4Q9UQ80 394 aaKnown RBP18.8■□□□□ 0.6
TRIM28-209ENST00000597423 RTL9Q8NET4 1388 aa18.8■□□□□ 0.6
TRIM28-209ENST00000597423 EYA2O00167 538 aa18.79■□□□□ 0.6
TRIM28-209ENST00000597423 POLRMTO00411 1230 aaKnown RBP18.79■□□□□ 0.6
TRIM28-209ENST00000597423 CCDC85AQ96PX6 553 aaPredicted RBP18.79■□□□□ 0.6
TRIM28-209ENST00000597423 SIL1Q9H173 461 aa18.79■□□□□ 0.6
TRIM28-209ENST00000597423 MMP10P09238 476 aa18.78■□□□□ 0.6
TRIM28-209ENST00000597423 IGHMBP2P38935 993 aaKnown RBP18.78■□□□□ 0.6
TRIM28-209ENST00000597423 PRR5LQ6MZQ0 368 aa18.78■□□□□ 0.6
TRIM28-209ENST00000597423 LDHAL6AQ6ZMR3 332 aa18.78■□□□□ 0.6
TRIM28-209ENST00000597423 MPHOSPH8Q99549 860 aa18.78■□□□□ 0.6
TRIM28-209ENST00000597423 C4AP0C0L4 1744 aa18.77■□□□□ 0.6
TRIM28-209ENST00000597423 DDR1Q08345 913 aa18.77■□□□□ 0.6
TRIM28-209ENST00000597423 DDX46Q7L014 1031 aaKnown RBP18.77■□□□□ 0.6
TRIM28-209ENST00000597423 KLHDC4Q8TBB5 520 aa18.77■□□□□ 0.6
TRIM28-209ENST00000597423 CNNM1Q9NRU3 951 aa18.77■□□□□ 0.6
TRIM28-209ENST00000597423 CEP126Q9P2H0 1117 aa18.77■□□□□ 0.6
TRIM28-209ENST00000597423 SMARCA5O60264 1052 aaPredicted RBP18.76■□□□□ 0.59
TRIM28-209ENST00000597423 BRIP1Q9BX63 1249 aa18.76■□□□□ 0.59
TRIM28-209ENST00000597423 BCL11AQ9H165 835 aa18.76■□□□□ 0.59
TRIM28-209ENST00000597423 IFIT2P09913 472 aaKnown RBP18.75■□□□□ 0.59
TRIM28-209ENST00000597423 ANKRD18AQ8IVF6 992 aa18.75■□□□□ 0.59
TRIM28-209ENST00000597423 GPATCH3Q96I76 525 aa18.75■□□□□ 0.59
TRIM28-209ENST00000597423 ZNF594Q96JF6 807 aaPredicted RBP18.75■□□□□ 0.59
TRIM28-209ENST00000597423 AKAP2Q9Y2D5 859 aa18.75■□□□□ 0.59
TRIM28-209ENST00000597423 SASH1O94885 1247 aa18.74■□□□□ 0.59
TRIM28-209ENST00000597423 PDE4AP27815 886 aa18.74■□□□□ 0.59
TRIM28-209ENST00000597423 PDE6BP35913 854 aa18.74■□□□□ 0.59
TRIM28-209ENST00000597423 MSL1Q68DK7 614 aa18.74■□□□□ 0.59
TRIM28-209ENST00000597423 RPGRQ92834 1020 aaKnown RBP18.74■□□□□ 0.59
TRIM28-209ENST00000597423 IL1RAPL2Q9NP60 686 aa18.74■□□□□ 0.59
TRIM28-209ENST00000597423 GPR108Q9NPR9 543 aa18.74■□□□□ 0.59
TRIM28-209ENST00000597423 RIC1Q4ADV7 1423 aa18.74■□□□□ 0.59
TRIM28-209ENST00000597423 MROH5Q6ZUA9 1318 aa18.74■□□□□ 0.59
TRIM28-209ENST00000597423 RBM17Q96I25 401 aaKnown RBP18.73■□□□□ 0.59
TRIM28-209ENST00000597423 ABCC12Q96J65 1359 aa18.72■□□□□ 0.59
TRIM28-209ENST00000597423 RPS8P62241 208 aaKnown RBP18.72■□□□□ 0.59
TRIM28-209ENST00000597423 TFCP2Q12800 502 aa18.72■□□□□ 0.59
TRIM28-209ENST00000597423 METTL24Q5JXM2 366 aa18.72■□□□□ 0.59
TRIM28-209ENST00000597423 ATG9AQ7Z3C6 839 aa18.72■□□□□ 0.59
TRIM28-209ENST00000597423 C16orf71Q8IYS4 520 aaPredicted RBP18.72■□□□□ 0.59
TRIM28-209ENST00000597423 CCDC24Q8N4L8 307 aa18.72■□□□□ 0.59
TRIM28-209ENST00000597423 RIPOR2Q9Y4F9 1068 aa18.72■□□□□ 0.59
TRIM28-209ENST00000597423 LRRC24Q50LG9 513 aa18.71■□□□□ 0.59
TRIM28-209ENST00000597423 AACSQ86V21 672 aa18.71■□□□□ 0.59
TRIM28-209ENST00000597423 PLEKHM2Q8IWE5 1019 aa18.71■□□□□ 0.59
TRIM28-209ENST00000597423 SEC31BQ9NQW1 1179 aa18.71■□□□□ 0.59
TRIM28-209ENST00000597423 BSDC1Q9NW68 430 aaPredicted RBP18.71■□□□□ 0.59
TRIM28-209ENST00000597423 COL24A1Q17RW2 1714 aa18.71■□□□□ 0.59
TRIM28-209ENST00000597423 KLRG2A4D1S0 409 aaPredicted RBP18.7■□□□□ 0.58
TRIM28-209ENST00000597423 MX1P20591 662 aa18.7■□□□□ 0.58
TRIM28-209ENST00000597423 CRY2Q49AN0 593 aa18.7■□□□□ 0.58
TRIM28-209ENST00000597423 C3orf67Q6ZVT6 689 aa18.7■□□□□ 0.58
TRIM28-209ENST00000597423 SKAP1Q86WV1 359 aa18.7■□□□□ 0.58
TRIM28-209ENST00000597423 PUS3Q9BZE2 481 aaKnown RBP18.7■□□□□ 0.58
TRIM28-209ENST00000597423 OSBPL3Q9H4L5 887 aa18.7■□□□□ 0.58
TRIM28-209ENST00000597423 STAP2Q9UGK3 403 aa18.7■□□□□ 0.58
TRIM28-209ENST00000597423 QSER1Q2KHR3 1735 aa18.69■□□□□ 0.58
TRIM28-209ENST00000597423 ERC2O15083 957 aa18.69■□□□□ 0.58
TRIM28-209ENST00000597423 BBOX1O75936 387 aa18.69■□□□□ 0.58
TRIM28-209ENST00000597423 POLD1P28340 1107 aa18.69■□□□□ 0.58
TRIM28-209ENST00000597423 TNNI3KQ59H18 835 aa18.69■□□□□ 0.58
TRIM28-209ENST00000597423 FPGT-TNNI3KV9GXZ4 949 aa18.69■□□□□ 0.58
TRIM28-209ENST00000597423 AOX1Q06278 1338 aa18.69■□□□□ 0.58
TRIM28-209ENST00000597423 TTC41PQ6P2S7 1318 aa18.69■□□□□ 0.58
TRIM28-209ENST00000597423 HOXA10P31260 410 aaPredicted RBP18.68■□□□□ 0.58
TRIM28-209ENST00000597423 PDE1AP54750 535 aa18.68■□□□□ 0.58
TRIM28-209ENST00000597423 GRAPQ13588 217 aa18.68■□□□□ 0.58
TRIM28-209ENST00000597423 TMC4Q7Z404 712 aa18.68■□□□□ 0.58
TRIM28-209ENST00000597423 GRAPLQ8TC17 118 aaPredicted RBP18.68■□□□□ 0.58
TRIM28-209ENST00000597423 NEUROD6Q96NK8 337 aa18.68■□□□□ 0.58
TRIM28-209ENST00000597423 CRAMP1Q96RY5 1269 aa18.68■□□□□ 0.58
TRIM28-209ENST00000597423 ANKRD2Q9GZV1 360 aa18.68■□□□□ 0.58
TRIM28-209ENST00000597423 MTFR1LQ9H019 292 aa18.68■□□□□ 0.58
TRIM28-209ENST00000597423 PDE8BO95263 885 aa18.67■□□□□ 0.58
TRIM28-209ENST00000597423 NPR1P16066 1061 aa18.67■□□□□ 0.58
TRIM28-209ENST00000597423 ALDH1B1P30837 517 aa18.67■□□□□ 0.58
TRIM28-209ENST00000597423 R3HDM1Q15032 1099 aaKnown RBP18.67■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms