RNA–Protein interactions for RNA: ENST00000596445.5

VRK3-211, Transcript of vaccinia related kinase 3, humanhuman

TSL 5

Gene VRK3, Length 840 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-211ENST00000596445 ALDH1B1P30837 517 aa10.52□□□□□ -0.73
VRK3-211ENST00000596445 CCDC152Q4G0S7 254 aa10.52□□□□□ -0.73
VRK3-211ENST00000596445 DALRD3Q5D0E6 543 aaKnown RBP10.52□□□□□ -0.73
VRK3-211ENST00000596445 DDX46Q7L014 1031 aaKnown RBP10.52□□□□□ -0.73
VRK3-211ENST00000596445 CNKSR1Q969H4 720 aa10.52□□□□□ -0.73
VRK3-211ENST00000596445 RBM17Q96I25 401 aaKnown RBP10.52□□□□□ -0.73
VRK3-211ENST00000596445 CRAMP1Q96RY5 1269 aa10.52□□□□□ -0.73
VRK3-211ENST00000596445 TAF1P21675 1872 aa10.52□□□□□ -0.73
VRK3-211ENST00000596445 CSF1RP07333 972 aa10.51□□□□□ -0.73
VRK3-211ENST00000596445 GNAI3P08754 354 aa10.51□□□□□ -0.73
VRK3-211ENST00000596445 UBTFL1P0CB47 393 aaPredicted RBP10.51□□□□□ -0.73
VRK3-211ENST00000596445 RRP1P56182 461 aaKnown RBP10.51□□□□□ -0.73
VRK3-211ENST00000596445 FOXO4P98177 505 aa10.51□□□□□ -0.73
VRK3-211ENST00000596445 ITPRIPQ8IWB1 547 aa10.51□□□□□ -0.73
VRK3-211ENST00000596445 TTLL11Q8NHH1 800 aa10.51□□□□□ -0.73
VRK3-211ENST00000596445 SUCLG2Q96I99 432 aa10.51□□□□□ -0.73
VRK3-211ENST00000596445 MEIS3Q99687 375 aa10.51□□□□□ -0.73
VRK3-211ENST00000596445 HDAC5Q9UQL6 1122 aa10.51□□□□□ -0.73
VRK3-211ENST00000596445 RTL9Q8NET4 1388 aa10.51□□□□□ -0.73
VRK3-211ENST00000596445 EPHA10Q5JZY3 1008 aa10.5□□□□□ -0.73
VRK3-211ENST00000596445 C20orf194Q5TEA3 1177 aa10.5□□□□□ -0.73
VRK3-211ENST00000596445 PRPF40BQ6NWY9 871 aaKnown RBP10.5□□□□□ -0.73
VRK3-211ENST00000596445 KAZALD1Q96I82 304 aa10.5□□□□□ -0.73
VRK3-211ENST00000596445 WWC3Q9ULE0 1092 aa10.5□□□□□ -0.73
VRK3-211ENST00000596445 BCS1LQ9Y276 419 aa10.5□□□□□ -0.73
VRK3-211ENST00000596445 ZBTB7BO15156 539 aaPredicted RBP10.49□□□□□ -0.73
VRK3-211ENST00000596445 BBOX1O75936 387 aa10.49□□□□□ -0.73
VRK3-211ENST00000596445 YBX3P16989 372 aaKnown RBP eCLIP10.49□□□□□ -0.737e-7■■□□□ 11.7
VRK3-211ENST00000596445 GRAPQ13588 217 aa10.49□□□□□ -0.73
VRK3-211ENST00000596445 MVPQ14764 893 aaKnown RBP10.49□□□□□ -0.73
VRK3-211ENST00000596445 GPR162Q16538 588 aa10.49□□□□□ -0.73
VRK3-211ENST00000596445 LMBR1LQ6UX01 489 aa10.49□□□□□ -0.73
VRK3-211ENST00000596445 PELP1Q8IZL8 1130 aaKnown RBP10.49□□□□□ -0.73
VRK3-211ENST00000596445 GRAPLQ8TC17 118 aaPredicted RBP10.49□□□□□ -0.73
VRK3-211ENST00000596445 CCDC85AQ96PX6 553 aaPredicted RBP10.49□□□□□ -0.73
VRK3-211ENST00000596445 BICC1Q9H694 974 aaKnown RBP10.49□□□□□ -0.73
VRK3-211ENST00000596445 GREM2Q9H772 168 aa10.49□□□□□ -0.73
VRK3-211ENST00000596445 SEC31BQ9NQW1 1179 aa10.49□□□□□ -0.73
VRK3-211ENST00000596445 DDX19BQ9UMR2 479 aa10.49□□□□□ -0.73
VRK3-211ENST00000596445 COG6Q9Y2V7 657 aa10.49□□□□□ -0.73
VRK3-211ENST00000596445 DCAF8L1A6NGE4 600 aa10.48□□□□□ -0.73
VRK3-211ENST00000596445 GNAI2P04899 355 aa10.48□□□□□ -0.73
VRK3-211ENST00000596445 RPS8P62241 208 aaKnown RBP10.48□□□□□ -0.73
VRK3-211ENST00000596445 FAM161AQ3B820 660 aa10.48□□□□□ -0.73
VRK3-211ENST00000596445 RABL6Q3YEC7 729 aaPredicted RBP10.48□□□□□ -0.73
VRK3-211ENST00000596445 TMC4Q7Z404 712 aa10.48□□□□□ -0.73
VRK3-211ENST00000596445 ANKRD44Q8N8A2 993 aa10.48□□□□□ -0.73
VRK3-211ENST00000596445 C7orf43Q8WVR3 580 aa10.48□□□□□ -0.73
VRK3-211ENST00000596445 CDC5LQ99459 802 aaKnown RBP10.48□□□□□ -0.73
VRK3-211ENST00000596445 CHMP4BQ9H444 224 aaKnown RBP10.48□□□□□ -0.73
VRK3-211ENST00000596445 CHMP3Q9Y3E7 222 aa10.48□□□□□ -0.73
VRK3-211ENST00000596445 SUPT16HQ9Y5B9 1047 aaKnown RBP10.48□□□□□ -0.73
VRK3-211ENST00000596445 LRRFIP2Q9Y608 721 aaKnown RBP10.48□□□□□ -0.73
VRK3-211ENST00000596445 SPEF2Q9C093 1822 aa10.48□□□□□ -0.73
VRK3-211ENST00000596445 COL4A1P02462 1669 aa10.47□□□□□ -0.73
VRK3-211ENST00000596445 FER1L6Q2WGJ9 1857 aa10.47□□□□□ -0.73
VRK3-211ENST00000596445 ANKRD18BA2A2Z9 1011 aa10.47□□□□□ -0.73
VRK3-211ENST00000596445 PPEF1O14829 653 aaPredicted RBP10.47□□□□□ -0.73
VRK3-211ENST00000596445 C21orf2O43822 256 aa10.47□□□□□ -0.73
VRK3-211ENST00000596445 GRIN3BO60391 1043 aa10.47□□□□□ -0.73
VRK3-211ENST00000596445 ITGA6P23229 1130 aa10.47□□□□□ -0.73
VRK3-211ENST00000596445 IFIT5Q13325 482 aaKnown RBP10.47□□□□□ -0.73
VRK3-211ENST00000596445 CCDC57Q2TAC2 916 aa10.47□□□□□ -0.73
VRK3-211ENST00000596445 SOGA3Q5TF21 947 aa10.47□□□□□ -0.73
VRK3-211ENST00000596445 ANKRD18AQ8IVF6 992 aa10.47□□□□□ -0.73
VRK3-211ENST00000596445 CELF1Q92879 486 aaKnown RBP10.47□□□□□ -0.73
VRK3-211ENST00000596445 LRRC37AA6NMS7 1700 aa10.47□□□□□ -0.73
VRK3-211ENST00000596445 CC2D2BQ6DHV5 1058 aa10.46□□□□□ -0.73
VRK3-211ENST00000596445 SP8Q8IXZ3 490 aa10.46□□□□□ -0.73
VRK3-211ENST00000596445 TMX4Q9H1E5 349 aaPredicted RBP10.46□□□□□ -0.73
VRK3-211ENST00000596445 ZNF219Q9P2Y4 722 aaPredicted RBP10.46□□□□□ -0.73
VRK3-211ENST00000596445 ATP6V0A2Q9Y487 856 aa10.46□□□□□ -0.73
VRK3-211ENST00000596445 IGHMBP2P38935 993 aaKnown RBP10.45□□□□□ -0.74
VRK3-211ENST00000596445 MTX1Q13505 466 aa10.45□□□□□ -0.74
VRK3-211ENST00000596445 GRIPAP1Q4V328 841 aa10.45□□□□□ -0.74
VRK3-211ENST00000596445 ZBTB40Q9NUA8 1239 aa10.45□□□□□ -0.74
VRK3-211ENST00000596445 BSDC1Q9NW68 430 aaPredicted RBP10.45□□□□□ -0.74
VRK3-211ENST00000596445 CCDC93Q567U6 631 aa10.44□□□□□ -0.74
VRK3-211ENST00000596445 TAF7LQ5H9L4 462 aa10.44□□□□□ -0.74
VRK3-211ENST00000596445 OLFM4Q6UX06 510 aa10.44□□□□□ -0.74
VRK3-211ENST00000596445 ARHGAP27Q6ZUM4 889 aa10.44□□□□□ -0.74
VRK3-211ENST00000596445 RTKN2Q8IZC4 609 aa10.44□□□□□ -0.74
VRK3-211ENST00000596445 MPHOSPH8Q99549 860 aa10.44□□□□□ -0.74
VRK3-211ENST00000596445 SBF1O95248 1867 aa10.44□□□□□ -0.74
VRK3-211ENST00000596445 CCDC88AQ3V6T2 1871 aa10.44□□□□□ -0.74
VRK3-211ENST00000596445 SNED1Q8TER0 1413 aa10.43□□□□□ -0.74
VRK3-211ENST00000596445 CHD4Q14839 1912 aa10.43□□□□□ -0.74
VRK3-211ENST00000596445 SRGAP3O43295 1099 aa10.43□□□□□ -0.74
VRK3-211ENST00000596445 CENPBP07199 599 aaPredicted RBP10.43□□□□□ -0.74
VRK3-211ENST00000596445 RFX5P48382 616 aaPredicted RBP10.43□□□□□ -0.74
VRK3-211ENST00000596445 LDHAL6AQ6ZMR3 332 aa10.43□□□□□ -0.74
VRK3-211ENST00000596445 SLC51AQ86UW1 340 aa10.43□□□□□ -0.74
VRK3-211ENST00000596445 ZNF594Q96JF6 807 aaPredicted RBP10.43□□□□□ -0.74
VRK3-211ENST00000596445 C1orf115Q9H7X2 142 aa10.43□□□□□ -0.74
VRK3-211ENST00000596445 LTBP1Q14766 1721 aa10.42□□□□□ -0.74
VRK3-211ENST00000596445 LTBP3Q9NS15 1303 aa10.42□□□□□ -0.74
VRK3-211ENST00000596445 NFKBIEO00221 500 aa10.42□□□□□ -0.74
VRK3-211ENST00000596445 ATP8B2P98198 1209 aa10.42□□□□□ -0.74
VRK3-211ENST00000596445 PTPN12Q05209 780 aaKnown RBP10.42□□□□□ -0.74
VRK3-211ENST00000596445 MPNDQ8N594 471 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms