RNA–Protein interactions for RNA: ENST00000596104.5

LIG1-209, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 531 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-209ENST00000596104 PAXIP1Q6ZW49 1069 aaPredicted RBP13.1□□□□□ -0.31
LIG1-209ENST00000596104 SAPCD2Q86UD0 394 aa13.1□□□□□ -0.31
LIG1-209ENST00000596104 MPNDQ8N594 471 aa13.1□□□□□ -0.31
LIG1-209ENST00000596104 GRAPLQ8TC17 118 aaPredicted RBP13.1□□□□□ -0.31
LIG1-209ENST00000596104 GLIS2Q9BZE0 524 aaPredicted RBP13.1□□□□□ -0.31
LIG1-209ENST00000596104 AOC2O75106 756 aa13.09□□□□□ -0.31
LIG1-209ENST00000596104 RAD17O75943 681 aa13.09□□□□□ -0.31
LIG1-209ENST00000596104 MAP2K2P36507 400 aa13.09□□□□□ -0.31
LIG1-209ENST00000596104 AIMP1Q12904 312 aaKnown RBP13.09□□□□□ -0.31
LIG1-209ENST00000596104 GRM1Q13255 1194 aa13.09□□□□□ -0.31
LIG1-209ENST00000596104 TRPM4Q8TD43 1214 aa13.09□□□□□ -0.31
LIG1-209ENST00000596104 NECTIN2Q92692 538 aa13.09□□□□□ -0.31
LIG1-209ENST00000596104 SH3TC1Q8TE82 1336 aa13.09□□□□□ -0.31
LIG1-209ENST00000596104 YDJCA8MPS7 323 aa13.08□□□□□ -0.32
LIG1-209ENST00000596104 CELF2O95319 508 aaKnown RBP13.08□□□□□ -0.32
LIG1-209ENST00000596104 KRT24Q2M2I5 525 aa13.08□□□□□ -0.32
LIG1-209ENST00000596104 DDX46Q7L014 1031 aaKnown RBP13.08□□□□□ -0.32
LIG1-209ENST00000596104 ZC3H15Q8WU90 426 aaKnown RBP13.08□□□□□ -0.32
LIG1-209ENST00000596104 HHIPL1Q96JK4 782 aa13.08□□□□□ -0.32
LIG1-209ENST00000596104 BEGAINQ9BUH8 593 aa13.08□□□□□ -0.32
LIG1-209ENST00000596104 TRMT112Q9UI30 125 aaKnown RBP13.08□□□□□ -0.32
LIG1-209ENST00000596104 DUOX1Q9NRD9 1551 aa13.07□□□□□ -0.32
LIG1-209ENST00000596104 SHTN1A0MZ66 631 aa13.07□□□□□ -0.32
LIG1-209ENST00000596104 CHL1O00533 1208 aa13.07□□□□□ -0.32
LIG1-209ENST00000596104 LMOD3Q0VAK6 560 aa13.07□□□□□ -0.32
LIG1-209ENST00000596104 TNIP1Q15025 636 aa13.07□□□□□ -0.32
LIG1-209ENST00000596104 BCL2L13Q9BXK5 485 aa13.07□□□□□ -0.32
LIG1-209ENST00000596104 TMC4Q7Z404 712 aa13.06□□□□□ -0.32
LIG1-209ENST00000596104 CHPF2Q9P2E5 772 aa13.06□□□□□ -0.32
LIG1-209ENST00000596104 CNOT7Q9UIV1 285 aaKnown RBP13.06□□□□□ -0.32
LIG1-209ENST00000596104 TSKSQ9UJT2 592 aa13.06□□□□□ -0.32
LIG1-209ENST00000596104 CA12O43570 354 aa13.05□□□□□ -0.32
LIG1-209ENST00000596104 BRPF1P55201 1214 aaPredicted RBP13.05□□□□□ -0.32
LIG1-209ENST00000596104 FAM161AQ3B820 660 aa13.05□□□□□ -0.32
LIG1-209ENST00000596104 CDC37L1Q7L3B6 337 aa13.05□□□□□ -0.32
LIG1-209ENST00000596104 MICALL2Q8IY33 904 aa13.05□□□□□ -0.32
LIG1-209ENST00000596104 ISCA1Q9BUE6 129 aa13.05□□□□□ -0.32
LIG1-209ENST00000596104 ZBTB12Q9Y330 459 aaPredicted RBP13.05□□□□□ -0.32
LIG1-209ENST00000596104 RALBP1Q15311 655 aa13.04□□□□□ -0.32
LIG1-209ENST00000596104 SF3B3Q15393 1217 aaKnown RBP13.04□□□□□ -0.32
LIG1-209ENST00000596104 PLBD2Q8NHP8 589 aa13.04□□□□□ -0.32
LIG1-209ENST00000596104 DPF2Q92785 391 aa13.04□□□□□ -0.32
LIG1-209ENST00000596104 CELF1Q92879 486 aaKnown RBP13.04□□□□□ -0.32
LIG1-209ENST00000596104 ZNF428Q96B54 188 aa13.04□□□□□ -0.32
LIG1-209ENST00000596104 ZNF408Q9H9D4 720 aa13.04□□□□□ -0.32
LIG1-209ENST00000596104 TRIM35Q9UPQ4 493 aa13.04□□□□□ -0.32
LIG1-209ENST00000596104 H7C1D1 291 aa13.03□□□□□ -0.32
LIG1-209ENST00000596104 PSMD14O00487 310 aa13.03□□□□□ -0.32
LIG1-209ENST00000596104 HOXB7P09629 217 aa13.03□□□□□ -0.32
LIG1-209ENST00000596104 RGS19P49795 217 aa13.03□□□□□ -0.32
LIG1-209ENST00000596104 WASHC4Q2M389 1173 aa13.03□□□□□ -0.32
LIG1-209ENST00000596104 DLK2Q6UY11 383 aa13.03□□□□□ -0.32
LIG1-209ENST00000596104 USP48Q86UV5 1035 aa13.03□□□□□ -0.32
LIG1-209ENST00000596104 FAM89AQ96GI7 184 aa13.03□□□□□ -0.32
LIG1-209ENST00000596104 ZIC5Q96T25 663 aa13.03□□□□□ -0.32
LIG1-209ENST00000596104 TRPM7Q96QT4 1865 aa13.03□□□□□ -0.32
LIG1-209ENST00000596104 LRRC37AA6NMS7 1700 aa13.02□□□□□ -0.32
LIG1-209ENST00000596104 LAMB2P55268 1798 aa13.02□□□□□ -0.32
LIG1-209ENST00000596104 ANKRD36CQ5JPF3 1778 aa13.02□□□□□ -0.32
LIG1-209ENST00000596104 CCDC85CA6NKD9 419 aa13.02□□□□□ -0.33
LIG1-209ENST00000596104 ATP5J2-PTCD1G3V325 749 aa13.02□□□□□ -0.33
LIG1-209ENST00000596104 EGFRP00533 1210 aa13.02□□□□□ -0.33
LIG1-209ENST00000596104 GPSM2P81274 684 aa13.02□□□□□ -0.33
LIG1-209ENST00000596104 NEUROD2Q15784 382 aa13.02□□□□□ -0.33
LIG1-209ENST00000596104 HDGFL1Q5TGJ6 251 aa13.02□□□□□ -0.33
LIG1-209ENST00000596104 ANKRD13DQ6ZTN6 518 aa13.02□□□□□ -0.33
LIG1-209ENST00000596104 SAMD7Q7Z3H4 446 aa13.02□□□□□ -0.33
LIG1-209ENST00000596104 CCDC146Q8IYE0 955 aa13.02□□□□□ -0.33
LIG1-209ENST00000596104 DBNDD1Q9H9R9 158 aa13.02□□□□□ -0.33
LIG1-209ENST00000596104 POLLQ9UGP5 575 aa13.02□□□□□ -0.33
LIG1-209ENST00000596104 NSFL1CQ9UNZ2 370 aaKnown RBP13.02□□□□□ -0.33
LIG1-209ENST00000596104 HUNKP57058 714 aa13.01□□□□□ -0.33
LIG1-209ENST00000596104 NOGQ13253 232 aa13.01□□□□□ -0.33
LIG1-209ENST00000596104 TRIM28Q13263 835 aaKnown RBP13.01□□□□□ -0.33
LIG1-209ENST00000596104 TBC1D10BQ4KMP7 808 aaPredicted RBP13.01□□□□□ -0.33
LIG1-209ENST00000596104 MCOLN1Q9GZU1 580 aa13.01□□□□□ -0.33
LIG1-209ENST00000596104 KCNQ5Q9NR82 932 aa13.01□□□□□ -0.33
LIG1-209ENST00000596104 DBF4Q9UBU7 674 aaPredicted RBP13.01□□□□□ -0.33
LIG1-209ENST00000596104 LAS1LQ9Y4W2 734 aaKnown RBP13.01□□□□□ -0.33
LIG1-209ENST00000596104 RTL9Q8NET4 1388 aa13.01□□□□□ -0.33
LIG1-209ENST00000596104 COL4A1P02462 1669 aa13.01□□□□□ -0.33
LIG1-209ENST00000596104 C6orf229H3BNL8 230 aa13□□□□□ -0.33
LIG1-209ENST00000596104 RIMBP2O15034 1052 aa13□□□□□ -0.33
LIG1-209ENST00000596104 RPS12P25398 132 aaKnown RBP13□□□□□ -0.33
LIG1-209ENST00000596104 KRT26Q7Z3Y9 468 aa13□□□□□ -0.33
LIG1-209ENST00000596104 RUNDC1Q96C34 613 aa13□□□□□ -0.33
LIG1-209ENST00000596104 MYBBP1AQ9BQG0 1328 aaKnown RBP12.99□□□□□ -0.33
LIG1-209ENST00000596104 FAM155AB1AL88 458 aaPredicted RBP12.99□□□□□ -0.33
LIG1-209ENST00000596104 IRS4O14654 1257 aaPredicted RBP12.99□□□□□ -0.33
LIG1-209ENST00000596104 ECE2O60344 883 aa12.99□□□□□ -0.33
LIG1-209ENST00000596104 SLC34A2O95436 690 aa12.99□□□□□ -0.33
LIG1-209ENST00000596104 RPS8P62241 208 aaKnown RBP12.99□□□□□ -0.33
LIG1-209ENST00000596104 MLLT1Q03111 559 aaPredicted RBP12.99□□□□□ -0.33
LIG1-209ENST00000596104 DOK7Q18PE1 504 aa12.99□□□□□ -0.33
LIG1-209ENST00000596104 RTL5Q5HYW3 569 aaPredicted RBP12.99□□□□□ -0.33
LIG1-209ENST00000596104 TBC1D16Q8TBP0 767 aa12.99□□□□□ -0.33
LIG1-209ENST00000596104 HYPKQ9NX55 129 aa12.99□□□□□ -0.33
LIG1-209ENST00000596104 ADM5C9JUS6 153 aa12.98□□□□□ -0.33
LIG1-209ENST00000596104 VIL1P09327 827 aaKnown RBP12.98□□□□□ -0.33
LIG1-209ENST00000596104 DUSP27Q5VZP5 1158 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms