RNA–Protein interactions for RNA: ENST00000595081.5

PNKP-205, Transcript of polynucleotide kinase 3'-phosphatase, human

TSL 2

Gene PNKP, Length 513 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PNKP-205	ENST00000595081	CTSW	P56202	376 aa		28.92	■■■□□ 2.22
PNKP-205	ENST00000595081	DDX46	Q7L014	1031 aa	Known RBP	28.92	■■■□□ 2.22
PNKP-205	ENST00000595081	NBPF7	P0C2Y1	421 aa	Predicted RBP	28.91	■■■□□ 2.22
PNKP-205	ENST00000595081	ARHGAP27	Q6ZUM4	889 aa		28.9	■■■□□ 2.22
PNKP-205	ENST00000595081	PLA2G12B	Q9BX93	195 aa		28.9	■■■□□ 2.22
PNKP-205	ENST00000595081	CCDC152	Q4G0S7	254 aa		28.89	■■■□□ 2.22
PNKP-205	ENST00000595081	OLFM4	Q6UX06	510 aa		28.89	■■■□□ 2.22
PNKP-205	ENST00000595081	SLC51A	Q86UW1	340 aa		28.89	■■■□□ 2.22
PNKP-205	ENST00000595081	TTLL11	Q8NHH1	800 aa		28.89	■■■□□ 2.22
PNKP-205	ENST00000595081	USP44	Q9H0E7	712 aa		28.89	■■■□□ 2.22
PNKP-205	ENST00000595081	UTY	O14607	1347 aa		28.89	■■■□□ 2.21
PNKP-205	ENST00000595081	INTS3	Q68E01	1043 aa	Known RBP	28.88	■■■□□ 2.21
PNKP-205	ENST00000595081	C7orf43	Q8WVR3	580 aa		28.88	■■■□□ 2.21
PNKP-205	ENST00000595081	SEC31B	Q9NQW1	1179 aa		28.88	■■■□□ 2.21
PNKP-205	ENST00000595081	COL4A1	P02462	1669 aa		28.87	■■■□□ 2.21
PNKP-205	ENST00000595081	PPEF1	O14829	653 aa	Predicted RBP	28.87	■■■□□ 2.21
PNKP-205	ENST00000595081	GRAP	Q13588	217 aa		28.87	■■■□□ 2.21
PNKP-205	ENST00000595081	EPHA10	Q5JZY3	1008 aa		28.87	■■■□□ 2.21
PNKP-205	ENST00000595081	GRAPL	Q8TC17	118 aa	Predicted RBP	28.87	■■■□□ 2.21
PNKP-205	ENST00000595081	SUCLG2	Q96I99	432 aa		28.87	■■■□□ 2.21
PNKP-205	ENST00000595081	TAF1	P21675	1872 aa		28.87	■■■□□ 2.21
PNKP-205	ENST00000595081	FOXO4	P98177	505 aa		28.86	■■■□□ 2.21
PNKP-205	ENST00000595081	CELF1	Q92879	486 aa	Known RBP	28.86	■■■□□ 2.21
PNKP-205	ENST00000595081	GREM2	Q9H772	168 aa		28.86	■■■□□ 2.21
PNKP-205	ENST00000595081	TMEM57	Q8N5G2	664 aa		28.85	■■■□□ 2.21
PNKP-205	ENST00000595081	MYH3	P11055	1940 aa		28.84	■■■□□ 2.21
PNKP-205	ENST00000595081	PLIN1	O60240	522 aa		28.84	■■■□□ 2.21
PNKP-205	ENST00000595081	RLBP1	P12271	317 aa		28.84	■■■□□ 2.21
PNKP-205	ENST00000595081	FTSJ3	Q8IY81	847 aa	Known RBP	28.84	■■■□□ 2.21
PNKP-205	ENST00000595081	DZIP1L	Q8IYY4	767 aa	Known RBP	28.84	■■■□□ 2.21
PNKP-205	ENST00000595081	KAZALD1	Q96I82	304 aa		28.84	■■■□□ 2.21
PNKP-205	ENST00000595081	CSF1R	P07333	972 aa		28.83	■■■□□ 2.21
PNKP-205	ENST00000595081	FAM161A	Q3B820	660 aa		28.83	■■■□□ 2.21
PNKP-205	ENST00000595081	BBOX1	O75936	387 aa		28.82	■■■□□ 2.2
PNKP-205	ENST00000595081	RASSF7	Q02833	373 aa		28.82	■■■□□ 2.2
PNKP-205	ENST00000595081	MEIS3	Q99687	375 aa		28.82	■■■□□ 2.2
PNKP-205	ENST00000595081	RTL9	Q8NET4	1388 aa		28.81	■■■□□ 2.2
PNKP-205	ENST00000595081	NFKBIE	O00221	500 aa		28.81	■■■□□ 2.2
PNKP-205	ENST00000595081	CCDC93	Q567U6	631 aa		28.81	■■■□□ 2.2
PNKP-205	ENST00000595081	SOGA3	Q5TF21	947 aa		28.81	■■■□□ 2.2
PNKP-205	ENST00000595081	LMBR1L	Q6UX01	489 aa		28.81	■■■□□ 2.2
PNKP-205	ENST00000595081	CHMP3	Q9Y3E7	222 aa		28.81	■■■□□ 2.2
PNKP-205	ENST00000595081	RPS8	P62241	208 aa	Known RBP	28.8	■■■□□ 2.2
PNKP-205	ENST00000595081	PANK1	Q8TE04	598 aa		28.8	■■■□□ 2.2
PNKP-205	ENST00000595081	BICC1	Q9H694	974 aa	Known RBP	28.8	■■■□□ 2.2
PNKP-205	ENST00000595081	ATP6V0A2	Q9Y487	856 aa		28.8	■■■□□ 2.2
PNKP-205	ENST00000595081	UBTFL1	P0CB47	393 aa	Predicted RBP	28.79	■■■□□ 2.2
PNKP-205	ENST00000595081	ITGA6	P23229	1130 aa		28.78	■■■□□ 2.2
PNKP-205	ENST00000595081	SNED1	Q8TER0	1413 aa		28.77	■■■□□ 2.2
PNKP-205	ENST00000595081	ITPRIP	Q8IWB1	547 aa		28.77	■■■□□ 2.2
PNKP-205	ENST00000595081	SP8	Q8IXZ3	490 aa		28.77	■■■□□ 2.2
PNKP-205	ENST00000595081	ANKRD44	Q8N8A2	993 aa		28.77	■■■□□ 2.2
PNKP-205	ENST00000595081	CDC5L	Q99459	802 aa	Known RBP	28.77	■■■□□ 2.2
PNKP-205	ENST00000595081	FER1L6	Q2WGJ9	1857 aa		28.76	■■■□□ 2.2
PNKP-205	ENST00000595081	PRELP	P51888	382 aa		28.76	■■■□□ 2.19
PNKP-205	ENST00000595081	CC2D2B	Q6DHV5	1058 aa		28.76	■■■□□ 2.19
PNKP-205	ENST00000595081	ANKRD18A	Q8IVF6	992 aa		28.76	■■■□□ 2.19
PNKP-205	ENST00000595081	TAOK3	Q9H2K8	898 aa		28.76	■■■□□ 2.19
PNKP-205	ENST00000595081	TMC4	Q7Z404	712 aa		28.75	■■■□□ 2.19
PNKP-205	ENST00000595081	RTKN2	Q8IZC4	609 aa		28.75	■■■□□ 2.19
PNKP-205	ENST00000595081	TMX4	Q9H1E5	349 aa	Predicted RBP	28.75	■■■□□ 2.19
PNKP-205	ENST00000595081	ANKRD18B	A2A2Z9	1011 aa		28.74	■■■□□ 2.19
PNKP-205	ENST00000595081	IFIT5	Q13325	482 aa	Known RBP	28.74	■■■□□ 2.19
PNKP-205	ENST00000595081	RABL6	Q3YEC7	729 aa	Predicted RBP	28.74	■■■□□ 2.19
PNKP-205	ENST00000595081	LRRFIP2	Q9Y608	721 aa	Known RBP	28.74	■■■□□ 2.19
PNKP-205	ENST00000595081	GNAI3	P08754	354 aa		28.73	■■■□□ 2.19
PNKP-205	ENST00000595081	MS4A1	P11836	297 aa		28.73	■■■□□ 2.19
PNKP-205	ENST00000595081	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	28.73	■■■□□ 2.19
PNKP-205	ENST00000595081	LTBP3	Q9NS15	1303 aa		28.72	■■■□□ 2.19
PNKP-205	ENST00000595081	FKBP4	Q02790	459 aa	Known RBP eCLIP	28.72	■■■□□ 2.19
PNKP-205	ENST00000595081	C20orf194	Q5TEA3	1177 aa		28.72	■■■□□ 2.19
PNKP-205	ENST00000595081	LRRC37A	A6NMS7	1700 aa		28.72	■■■□□ 2.19
PNKP-205	ENST00000595081	CHD4	Q14839	1912 aa		28.71	■■■□□ 2.19
PNKP-205	ENST00000595081	IGHMBP2	P38935	993 aa	Known RBP	28.71	■■■□□ 2.19
PNKP-205	ENST00000595081	CCDC57	Q2TAC2	916 aa		28.71	■■■□□ 2.19
PNKP-205	ENST00000595081	C9orf131	Q5VYM1	1079 aa		28.71	■■■□□ 2.19
PNKP-205	ENST00000595081	LMNB1	P20700	586 aa		28.7	■■■□□ 2.18
PNKP-205	ENST00000595081	ZNF594	Q96JF6	807 aa	Predicted RBP	28.7	■■■□□ 2.18
PNKP-205	ENST00000595081	ZNF277	Q9NRM2	450 aa	Predicted RBP	28.7	■■■□□ 2.18
PNKP-205	ENST00000595081	RNF181	Q9P0P0	153 aa		28.7	■■■□□ 2.18
PNKP-205	ENST00000595081	SPEF2	Q9C093	1822 aa		28.7	■■■□□ 2.18
PNKP-205	ENST00000595081	GPSM2	P81274	684 aa		28.69	■■■□□ 2.18
PNKP-205	ENST00000595081	GRIPAP1	Q4V328	841 aa		28.69	■■■□□ 2.18
PNKP-205	ENST00000595081	DPP8	Q6V1X1	898 aa	Predicted RBP	28.69	■■■□□ 2.18
PNKP-205	ENST00000595081	MPND	Q8N594	471 aa		28.69	■■■□□ 2.18
PNKP-205	ENST00000595081	PSMD1	Q99460	953 aa		28.69	■■■□□ 2.18
PNKP-205	ENST00000595081	BSDC1	Q9NW68	430 aa	Predicted RBP	28.69	■■■□□ 2.18
PNKP-205	ENST00000595081	COG6	Q9Y2V7	657 aa		28.69	■■■□□ 2.18
PNKP-205	ENST00000595081	TAF7L	Q5H9L4	462 aa		28.68	■■■□□ 2.18
PNKP-205	ENST00000595081	MPHOSPH8	Q99549	860 aa		28.68	■■■□□ 2.18
PNKP-205	ENST00000595081	HDAC5	Q9UQL6	1122 aa		28.68	■■■□□ 2.18
PNKP-205	ENST00000595081	ZBTB7B	O15156	539 aa	Predicted RBP	28.67	■■■□□ 2.18
PNKP-205	ENST00000595081	RRP1	P56182	461 aa	Known RBP	28.67	■■■□□ 2.18
PNKP-205	ENST00000595081	NSFL1C	Q9UNZ2	370 aa	Known RBP	28.67	■■■□□ 2.18
PNKP-205	ENST00000595081	SBF1	O95248	1867 aa		28.67	■■■□□ 2.18
PNKP-205	ENST00000595081	GNAI2	P04899	355 aa		28.66	■■■□□ 2.18
PNKP-205	ENST00000595081	PDE3A	Q14432	1141 aa		28.66	■■■□□ 2.18
PNKP-205	ENST00000595081	MVP	Q14764	893 aa	Known RBP	28.66	■■■□□ 2.18
PNKP-205	ENST00000595081	MINPP1	Q9UNW1	487 aa		28.66	■■■□□ 2.18
PNKP-205	ENST00000595081	DUOX1	Q9NRD9	1551 aa		28.65	■■■□□ 2.18

Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms