RNA–Protein interactions for RNA: ENST00000593168.5

VMP1-217, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 558 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-217ENST00000593168 HLFQ16534 295 aa16.76■□□□□ 0.27
VMP1-217ENST00000593168 SMC1BQ8NDV3 1235 aa16.76■□□□□ 0.27
VMP1-217ENST00000593168 PDZRN3Q9UPQ7 1066 aa16.76■□□□□ 0.27
VMP1-217ENST00000593168 TBC1D2BQ9UPU7 963 aa16.76■□□□□ 0.27
VMP1-217ENST00000593168 CASP7P55210 303 aa16.75■□□□□ 0.27
VMP1-217ENST00000593168 NFIXQ14938 502 aa16.75■□□□□ 0.27
VMP1-217ENST00000593168 SSH3Q8TE77 659 aa16.75■□□□□ 0.27
VMP1-217ENST00000593168 CAPN15O75808 1086 aa16.74■□□□□ 0.27
VMP1-217ENST00000593168 CAMTA2O94983 1202 aa16.74■□□□□ 0.27
VMP1-217ENST00000593168 NUCB1Q02818 461 aa16.74■□□□□ 0.27
VMP1-217ENST00000593168 POLA2Q14181 598 aa16.74■□□□□ 0.27
VMP1-217ENST00000593168 PPP1R42Q7Z4L9 355 aa16.74■□□□□ 0.27
VMP1-217ENST00000593168 KAZALD1Q96I82 304 aa16.74■□□□□ 0.27
VMP1-217ENST00000593168 SUCLG2Q96I99 432 aa16.74■□□□□ 0.27
VMP1-217ENST00000593168 BCL2L12Q9HB09 334 aa16.74■□□□□ 0.27
VMP1-217ENST00000593168 NARFQ9UHQ1 456 aa16.74■□□□□ 0.27
VMP1-217ENST00000593168 ZC3H4Q9UPT8 1303 aaKnown RBP16.73■□□□□ 0.27
VMP1-217ENST00000593168 PNMA6EA0A0J9YXQ4 647 aa16.73■□□□□ 0.27
VMP1-217ENST00000593168 LMNB1P20700 586 aa16.73■□□□□ 0.27
VMP1-217ENST00000593168 ZNF34Q8IZ26 560 aa16.73■□□□□ 0.27
VMP1-217ENST00000593168 ANKRD31Q8N7Z5 1873 aa16.73■□□□□ 0.27
VMP1-217ENST00000593168 NUP98P52948 1817 aa16.73■□□□□ 0.27
VMP1-217ENST00000593168 GLTPD2A6NH11 291 aa16.72■□□□□ 0.27
VMP1-217ENST00000593168 SERPINB2P05120 415 aa16.72■□□□□ 0.27
VMP1-217ENST00000593168 CLEC4GQ6UXB4 293 aa16.72■□□□□ 0.27
VMP1-217ENST00000593168 UBE3BQ7Z3V4 1068 aa16.72■□□□□ 0.27
VMP1-217ENST00000593168 NLRP10Q86W26 655 aa16.72■□□□□ 0.27
VMP1-217ENST00000593168 CARMIL3Q8ND23 1372 aa16.72■□□□□ 0.27
VMP1-217ENST00000593168 SRGAP3O43295 1099 aa16.71■□□□□ 0.27
VMP1-217ENST00000593168 PCCAP05165 728 aaPredicted RBP16.71■□□□□ 0.27
VMP1-217ENST00000593168 VEGFAP15692 232 aaPredicted RBP16.71■□□□□ 0.27
VMP1-217ENST00000593168 RABL6Q3YEC7 729 aaPredicted RBP16.71■□□□□ 0.27
VMP1-217ENST00000593168 CHD1LQ86WJ1 897 aa16.71■□□□□ 0.27
VMP1-217ENST00000593168 TNS4Q8IZW8 715 aa16.71■□□□□ 0.27
VMP1-217ENST00000593168 BICC1Q9H694 974 aaKnown RBP16.71■□□□□ 0.27
VMP1-217ENST00000593168 ZNF652Q9Y2D9 606 aa16.71■□□□□ 0.27
VMP1-217ENST00000593168 DICER1Q9UPY3 1922 aaKnown RBP16.7■□□□□ 0.26
VMP1-217ENST00000593168 ANKRD36CQ5JPF3 1778 aa16.7■□□□□ 0.26
VMP1-217ENST00000593168 NFKBIEO00221 500 aa16.7■□□□□ 0.26
VMP1-217ENST00000593168 ANKRD45Q5TZF3 282 aa16.7■□□□□ 0.26
VMP1-217ENST00000593168 C2CD5Q86YS7 1000 aa16.7■□□□□ 0.26
VMP1-217ENST00000593168 TTLL6Q8N841 843 aa16.7■□□□□ 0.26
VMP1-217ENST00000593168 ZBTB38Q8NAP3 1195 aaPredicted RBP16.7■□□□□ 0.26
VMP1-217ENST00000593168 COL11A2P13942 1736 aaPredicted RBP16.7■□□□□ 0.26
VMP1-217ENST00000593168 POTECB2RU33 542 aa16.69■□□□□ 0.26
VMP1-217ENST00000593168 GPTP24298 496 aa16.69■□□□□ 0.26
VMP1-217ENST00000593168 PARP10Q53GL7 1025 aa16.69■□□□□ 0.26
VMP1-217ENST00000593168 EPHA10Q5JZY3 1008 aa16.69■□□□□ 0.26
VMP1-217ENST00000593168 PLA2G12BQ9BX93 195 aa16.69■□□□□ 0.26
VMP1-217ENST00000593168 NOP58Q9Y2X3 529 aaKnown RBP16.69■□□□□ 0.26
VMP1-217ENST00000593168 FER1L6Q2WGJ9 1857 aa16.69■□□□□ 0.26
VMP1-217ENST00000593168 CDHR2Q9BYE9 1310 aa16.69■□□□□ 0.26
VMP1-217ENST00000593168 HSPA1AP0DMV8 641 aaKnown RBP16.68■□□□□ 0.26
VMP1-217ENST00000593168 HSPA1BP0DMV9 641 aaKnown RBP16.68■□□□□ 0.26
VMP1-217ENST00000593168 RGS3P49796 1198 aa16.68■□□□□ 0.26
VMP1-217ENST00000593168 HSP90AB4PQ58FF6 505 aa16.68■□□□□ 0.26
VMP1-217ENST00000593168 SKAP1Q86WV1 359 aa16.68■□□□□ 0.26
VMP1-217ENST00000593168 JARID2Q92833 1246 aaPredicted RBP16.68■□□□□ 0.26
VMP1-217ENST00000593168 ZBTB47Q9UFB7 747 aaPredicted RBP16.68■□□□□ 0.26
VMP1-217ENST00000593168 CACNA1SQ13698 1873 aa16.67■□□□□ 0.26
VMP1-217ENST00000593168 BCORQ6W2J9 1755 aa16.67■□□□□ 0.26
VMP1-217ENST00000593168 SCN7AQ01118 1682 aa16.67■□□□□ 0.26
VMP1-217ENST00000593168 RAB11FIP3O75154 756 aa16.67■□□□□ 0.26
VMP1-217ENST00000593168 SURF6O75683 361 aaKnown RBP16.67■□□□□ 0.26
VMP1-217ENST00000593168 FOXO4P98177 505 aa16.67■□□□□ 0.26
VMP1-217ENST00000593168 PIAS4Q8N2W9 510 aaPredicted RBP16.67■□□□□ 0.26
VMP1-217ENST00000593168 LNPKQ9C0E8 428 aa16.67■□□□□ 0.26
VMP1-217ENST00000593168 UBN2Q6ZU65 1347 aa16.67■□□□□ 0.26
VMP1-217ENST00000593168 H0YIN7 160 aa16.66■□□□□ 0.26
VMP1-217ENST00000593168 PDE4AP27815 886 aa16.66■□□□□ 0.26
VMP1-217ENST00000593168 BICDL1Q6ZP65 573 aa16.66■□□□□ 0.26
VMP1-217ENST00000593168 TRMT112Q9UI30 125 aaKnown RBP16.66■□□□□ 0.26
VMP1-217ENST00000593168 NIP7Q9Y221 180 aaKnown RBP eCLIP16.66■□□□□ 0.26
VMP1-217ENST00000593168 EXOC6BQ9Y2D4 811 aa16.66■□□□□ 0.26
VMP1-217ENST00000593168 FAM89AQ96GI7 184 aa16.65■□□□□ 0.26
VMP1-217ENST00000593168 UTP14AQ9BVJ6 771 aaKnown RBP16.65■□□□□ 0.26
VMP1-217ENST00000593168 RTL5Q5HYW3 569 aaPredicted RBP16.64■□□□□ 0.25
VMP1-217ENST00000593168 SUSD4Q5VX71 490 aa16.64■□□□□ 0.25
VMP1-217ENST00000593168 LMBR1LQ6UX01 489 aa16.64■□□□□ 0.25
VMP1-217ENST00000593168 LRRCC1Q9C099 1032 aa16.64■□□□□ 0.25
VMP1-217ENST00000593168 COPRSQ9NQ92 184 aa16.64■□□□□ 0.25
VMP1-217ENST00000593168 ZNF219Q9P2Y4 722 aaPredicted RBP16.64■□□□□ 0.25
VMP1-217ENST00000593168 SH3TC1Q8TE82 1336 aa16.64■□□□□ 0.25
VMP1-217ENST00000593168 C21orf2O43822 256 aa16.63■□□□□ 0.25
VMP1-217ENST00000593168 CSF1RP07333 972 aa16.63■□□□□ 0.25
VMP1-217ENST00000593168 HSP90B1P14625 803 aaKnown RBP16.63■□□□□ 0.25
VMP1-217ENST00000593168 RFX5P48382 616 aaPredicted RBP16.63■□□□□ 0.25
VMP1-217ENST00000593168 TBC1D9BQ66K14 1250 aa16.63■□□□□ 0.25
VMP1-217ENST00000593168 ERC1Q8IUD2 1116 aa16.63■□□□□ 0.25
VMP1-217ENST00000593168 CCDC24Q8N4L8 307 aa16.63■□□□□ 0.25
VMP1-217ENST00000593168 KIF1BPQ96EK5 621 aa16.63■□□□□ 0.25
VMP1-217ENST00000593168 SLX4Q8IY92 1834 aa16.62■□□□□ 0.25
VMP1-217ENST00000593168 IRS4O14654 1257 aaPredicted RBP16.62■□□□□ 0.25
VMP1-217ENST00000593168 ZNF622Q969S3 477 aaKnown RBP eCLIP16.62■□□□□ 0.252e-7■■□□□ 12.7
VMP1-217ENST00000593168 SMARCA5O60264 1052 aaPredicted RBP16.61■□□□□ 0.25
VMP1-217ENST00000593168 PDE8AO60658 829 aa16.61■□□□□ 0.25
VMP1-217ENST00000593168 NTSR2O95665 410 aa16.61■□□□□ 0.25
VMP1-217ENST00000593168 PTPN12Q05209 780 aaKnown RBP16.61■□□□□ 0.25
VMP1-217ENST00000593168 G3BP1Q13283 466 aaKnown RBP eCLIP16.61■□□□□ 0.25
VMP1-217ENST00000593168 PRR5LQ6MZQ0 368 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 293.8 ms