RNA–Protein interactions for RNA: ENST00000588667.5

ATG4D-208, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4D, Length 1,619 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-208ENST00000588667 ATF7IPQ6VMQ6 1270 aa25.41■■□□□ 1.66
ATG4D-208ENST00000588667 C9orf78Q9NZ63 289 aaPredicted RBP25.41■■□□□ 1.66
ATG4D-208ENST00000588667 TAF1P21675 1872 aa25.41■■□□□ 1.66
ATG4D-208ENST00000588667 ABCC4O15439 1325 aa25.41■■□□□ 1.66
ATG4D-208ENST00000588667 TRIM27P14373 513 aa25.41■■□□□ 1.66
ATG4D-208ENST00000588667 DDX46Q7L014 1031 aaKnown RBP25.41■■□□□ 1.66
ATG4D-208ENST00000588667 PLA2G12BQ9BX93 195 aa25.41■■□□□ 1.66
ATG4D-208ENST00000588667 CTSWP56202 376 aa25.4■■□□□ 1.66
ATG4D-208ENST00000588667 ZKSCAN2Q63HK3 967 aa25.4■■□□□ 1.66
ATG4D-208ENST00000588667 FER1L6Q2WGJ9 1857 aa25.39■■□□□ 1.66
ATG4D-208ENST00000588667 CCDC152Q4G0S7 254 aa25.39■■□□□ 1.66
ATG4D-208ENST00000588667 UTYO14607 1347 aa25.38■■□□□ 1.65
ATG4D-208ENST00000588667 C21orf2O43822 256 aa25.38■■□□□ 1.65
ATG4D-208ENST00000588667 SOGA3Q5TF21 947 aa25.38■■□□□ 1.65
ATG4D-208ENST00000588667 C7orf43Q8WVR3 580 aa25.38■■□□□ 1.65
ATG4D-208ENST00000588667 GRAPQ13588 217 aa25.37■■□□□ 1.65
ATG4D-208ENST00000588667 ARHGAP27Q6ZUM4 889 aa25.37■■□□□ 1.65
ATG4D-208ENST00000588667 GRAPLQ8TC17 118 aaPredicted RBP25.37■■□□□ 1.65
ATG4D-208ENST00000588667 ZNF219Q9P2Y4 722 aaPredicted RBP25.37■■□□□ 1.65
ATG4D-208ENST00000588667 PPEF1O14829 653 aaPredicted RBP25.36■■□□□ 1.65
ATG4D-208ENST00000588667 INTS3Q68E01 1043 aaKnown RBP25.35■■□□□ 1.65
ATG4D-208ENST00000588667 TTLL11Q8NHH1 800 aa25.35■■□□□ 1.65
ATG4D-208ENST00000588667 RTL9Q8NET4 1388 aa25.35■■□□□ 1.65
ATG4D-208ENST00000588667 BBOX1O75936 387 aa25.34■■□□□ 1.65
ATG4D-208ENST00000588667 SBF1O95248 1867 aa25.34■■□□□ 1.65
ATG4D-208ENST00000588667 NBPF7P0C2Y1 421 aaPredicted RBP25.34■■□□□ 1.65
ATG4D-208ENST00000588667 USP44Q9H0E7 712 aa25.34■■□□□ 1.65
ATG4D-208ENST00000588667 PLIN1O60240 522 aa25.34■■□□□ 1.65
ATG4D-208ENST00000588667 CCDC93Q567U6 631 aa25.34■■□□□ 1.65
ATG4D-208ENST00000588667 TNNQ9UQP3 1299 aa25.34■■□□□ 1.65
ATG4D-208ENST00000588667 COL4A1P02462 1669 aa25.34■■□□□ 1.65
ATG4D-208ENST00000588667 CC2D2BQ6DHV5 1058 aa25.33■■□□□ 1.65
ATG4D-208ENST00000588667 CLUAP1Q96AJ1 413 aa25.33■■□□□ 1.65
ATG4D-208ENST00000588667 CCDC85AQ96PX6 553 aaPredicted RBP25.33■■□□□ 1.65
ATG4D-208ENST00000588667 LRRC37AA6NMS7 1700 aa25.33■■□□□ 1.64
ATG4D-208ENST00000588667 CSF1RP07333 972 aa25.32■■□□□ 1.64
ATG4D-208ENST00000588667 FOXO4P98177 505 aa25.32■■□□□ 1.64
ATG4D-208ENST00000588667 TMC4Q7Z404 712 aa25.32■■□□□ 1.64
ATG4D-208ENST00000588667 CELF1Q92879 486 aaKnown RBP25.32■■□□□ 1.64
ATG4D-208ENST00000588667 FTSJ3Q8IY81 847 aaKnown RBP25.31■■□□□ 1.64
ATG4D-208ENST00000588667 GREM2Q9H772 168 aa25.31■■□□□ 1.64
ATG4D-208ENST00000588667 SEC31BQ9NQW1 1179 aa25.31■■□□□ 1.64
ATG4D-208ENST00000588667 ATP6V0A2Q9Y487 856 aa25.31■■□□□ 1.64
ATG4D-208ENST00000588667 CCDC88AQ3V6T2 1871 aa25.31■■□□□ 1.64
ATG4D-208ENST00000588667 SNED1Q8TER0 1413 aa25.31■■□□□ 1.64
ATG4D-208ENST00000588667 NFKBIEO00221 500 aa25.3■■□□□ 1.64
ATG4D-208ENST00000588667 OLFM4Q6UX06 510 aa25.3■■□□□ 1.64
ATG4D-208ENST00000588667 SUCLG2Q96I99 432 aa25.3■■□□□ 1.64
ATG4D-208ENST00000588667 SPEF2Q9C093 1822 aa25.3■■□□□ 1.64
ATG4D-208ENST00000588667 RPS8P62241 208 aaKnown RBP25.3■■□□□ 1.64
ATG4D-208ENST00000588667 GRIPAP1Q4V328 841 aa25.3■■□□□ 1.64
ATG4D-208ENST00000588667 RTKN2Q8IZC4 609 aa25.3■■□□□ 1.64
ATG4D-208ENST00000588667 CDC5LQ99459 802 aaKnown RBP25.3■■□□□ 1.64
ATG4D-208ENST00000588667 TMX4Q9H1E5 349 aaPredicted RBP25.3■■□□□ 1.64
ATG4D-208ENST00000588667 LTBP3Q9NS15 1303 aa25.29■■□□□ 1.64
ATG4D-208ENST00000588667 RASSF7Q02833 373 aa25.29■■□□□ 1.64
ATG4D-208ENST00000588667 FAM161AQ3B820 660 aa25.29■■□□□ 1.64
ATG4D-208ENST00000588667 EPHA10Q5JZY3 1008 aa25.29■■□□□ 1.64
ATG4D-208ENST00000588667 DZIP1LQ8IYY4 767 aaKnown RBP25.29■■□□□ 1.64
ATG4D-208ENST00000588667 KAZALD1Q96I82 304 aa25.29■■□□□ 1.64
ATG4D-208ENST00000588667 TAOK3Q9H2K8 898 aa25.29■■□□□ 1.64
ATG4D-208ENST00000588667 SP8Q8IXZ3 490 aa25.28■■□□□ 1.64
ATG4D-208ENST00000588667 PPP4R2Q9NY27 417 aa25.28■■□□□ 1.64
ATG4D-208ENST00000588667 UBTFL1P0CB47 393 aaPredicted RBP25.27■■□□□ 1.64
ATG4D-208ENST00000588667 LMBR1LQ6UX01 489 aa25.27■■□□□ 1.64
ATG4D-208ENST00000588667 TMEM57Q8N5G2 664 aa25.27■■□□□ 1.64
ATG4D-208ENST00000588667 ITGA6P23229 1130 aa25.26■■□□□ 1.63
ATG4D-208ENST00000588667 ANKRD18AQ8IVF6 992 aa25.26■■□□□ 1.63
ATG4D-208ENST00000588667 DICER1Q9UPY3 1922 aaKnown RBP25.26■■□□□ 1.63
ATG4D-208ENST00000588667 MS4A1P11836 297 aa25.26■■□□□ 1.63
ATG4D-208ENST00000588667 RABL6Q3YEC7 729 aaPredicted RBP25.26■■□□□ 1.63
ATG4D-208ENST00000588667 SLC51AQ86UW1 340 aa25.26■■□□□ 1.63
ATG4D-208ENST00000588667 MEIS3Q99687 375 aa25.26■■□□□ 1.63
ATG4D-208ENST00000588667 BICC1Q9H694 974 aaKnown RBP25.26■■□□□ 1.63
ATG4D-208ENST00000588667 HDAC5Q9UQL6 1122 aa25.26■■□□□ 1.63
ATG4D-208ENST00000588667 RLBP1P12271 317 aa25.25■■□□□ 1.63
ATG4D-208ENST00000588667 FKBP4Q02790 459 aaKnown RBP eCLIP25.25■■□□□ 1.63
ATG4D-208ENST00000588667 CHMP3Q9Y3E7 222 aa25.25■■□□□ 1.63
ATG4D-208ENST00000588667 LMNB1P20700 586 aa25.24■■□□□ 1.63
ATG4D-208ENST00000588667 PDE3AQ14432 1141 aa25.24■■□□□ 1.63
ATG4D-208ENST00000588667 PSMD1Q99460 953 aa25.24■■□□□ 1.63
ATG4D-208ENST00000588667 ANKRD18BA2A2Z9 1011 aa25.23■■□□□ 1.63
ATG4D-208ENST00000588667 GNAI3P08754 354 aa25.23■■□□□ 1.63
ATG4D-208ENST00000588667 IFIT5Q13325 482 aaKnown RBP25.23■■□□□ 1.63
ATG4D-208ENST00000588667 LTBP1Q14766 1721 aa25.23■■□□□ 1.63
ATG4D-208ENST00000588667 ANKRD44Q8N8A2 993 aa25.23■■□□□ 1.63
ATG4D-208ENST00000588667 IGHMBP2P38935 993 aaKnown RBP25.22■■□□□ 1.63
ATG4D-208ENST00000588667 CCDC57Q2TAC2 916 aa25.22■■□□□ 1.63
ATG4D-208ENST00000588667 C20orf194Q5TEA3 1177 aa25.22■■□□□ 1.63
ATG4D-208ENST00000588667 C9orf131Q5VYM1 1079 aa25.22■■□□□ 1.63
ATG4D-208ENST00000588667 ITPRIPQ8IWB1 547 aa25.22■■□□□ 1.63
ATG4D-208ENST00000588667 PRELPP51888 382 aa25.21■■□□□ 1.63
ATG4D-208ENST00000588667 TIAM2Q8IVF5 1701 aa25.21■■□□□ 1.63
ATG4D-208ENST00000588667 EXOC6Q8TAG9 804 aa25.21■■□□□ 1.63
ATG4D-208ENST00000588667 BSDC1Q9NW68 430 aaPredicted RBP25.21■■□□□ 1.63
ATG4D-208ENST00000588667 RNF181Q9P0P0 153 aa25.21■■□□□ 1.63
ATG4D-208ENST00000588667 DUOX1Q9NRD9 1551 aa25.2■■□□□ 1.63
ATG4D-208ENST00000588667 DPP8Q6V1X1 898 aaPredicted RBP25.2■■□□□ 1.62
ATG4D-208ENST00000588667 MPNDQ8N594 471 aa25.2■■□□□ 1.62
ATG4D-208ENST00000588667 PANK1Q8TE04 598 aa25.2■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms