RNA–Protein interactions for RNA: ENST00000588617.1

VMP1-208, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 884 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-208ENST00000588617 PHKA2P46019 1235 aa11.2□□□□□ -0.62
VMP1-208ENST00000588617 NBPF10Q6P3W6 841 aaKnown RBP11.2□□□□□ -0.62
VMP1-208ENST00000588617 KLF16Q9BXK1 252 aaPredicted RBP11.2□□□□□ -0.62
VMP1-208ENST00000588617 BCO2Q9BYV7 579 aa11.2□□□□□ -0.62
VMP1-208ENST00000588617 COPRSQ9NQ92 184 aa11.2□□□□□ -0.62
VMP1-208ENST00000588617 INPP5BP32019 993 aa11.19□□□□□ -0.62
VMP1-208ENST00000588617 TRIP4Q15650 581 aaPredicted RBP11.19□□□□□ -0.62
VMP1-208ENST00000588617 SDE2Q6IQ49 451 aa11.19□□□□□ -0.62
VMP1-208ENST00000588617 ERMP1Q7Z2K6 904 aa11.19□□□□□ -0.62
VMP1-208ENST00000588617 ZNF598Q86UK7 904 aaKnown RBP11.19□□□□□ -0.62
VMP1-208ENST00000588617 GPC6Q9Y625 555 aaPredicted RBP11.19□□□□□ -0.62
VMP1-208ENST00000588617 ZNF697Q5TEC3 545 aa11.18□□□□□ -0.62
VMP1-208ENST00000588617 TMEM63CQ9P1W3 806 aa11.18□□□□□ -0.62
VMP1-208ENST00000588617 TBX22Q9Y458 520 aa11.18□□□□□ -0.62
VMP1-208ENST00000588617 KCNMB2Q9Y691 235 aa11.18□□□□□ -0.62
VMP1-208ENST00000588617 RNF144AP50876 292 aaPredicted RBP11.17□□□□□ -0.62
VMP1-208ENST00000588617 FOXC1Q12948 553 aa11.17□□□□□ -0.62
VMP1-208ENST00000588617 BMS1Q14692 1282 aaKnown RBP11.17□□□□□ -0.62
VMP1-208ENST00000588617 BTLAQ7Z6A9 289 aa11.17□□□□□ -0.62
VMP1-208ENST00000588617 TIMP2P16035 220 aa11.16□□□□□ -0.62
VMP1-208ENST00000588617 GALNT12Q8IXK2 581 aa11.16□□□□□ -0.62
VMP1-208ENST00000588617 KBTBD4Q9NVX7 518 aa11.16□□□□□ -0.62
VMP1-208ENST00000588617 WDR3Q9UNX4 943 aaKnown RBP eCLIP11.16□□□□□ -0.62
VMP1-208ENST00000588617 SBNO2Q9Y2G9 1366 aa11.16□□□□□ -0.62
VMP1-208ENST00000588617 PRR20EP86478 221 aa11.15□□□□□ -0.62
VMP1-208ENST00000588617 PRR20CP86479 221 aa11.15□□□□□ -0.62
VMP1-208ENST00000588617 PRR20DP86480 221 aa11.15□□□□□ -0.62
VMP1-208ENST00000588617 PRR20BP86481 221 aa11.15□□□□□ -0.62
VMP1-208ENST00000588617 PRR20AP86496 221 aa11.15□□□□□ -0.62
VMP1-208ENST00000588617 SNIP1Q8TAD8 396 aaKnown RBP11.15□□□□□ -0.62
VMP1-208ENST00000588617 INSM2Q96T92 566 aaPredicted RBP11.15□□□□□ -0.62
VMP1-208ENST00000588617 SPON2Q9BUD6 331 aa11.15□□□□□ -0.62
VMP1-208ENST00000588617 TTF2Q9UNY4 1162 aaKnown RBP11.15□□□□□ -0.62
VMP1-208ENST00000588617 EREGO14944 169 aa11.14□□□□□ -0.63
VMP1-208ENST00000588617 LRRC69Q6ZNQ3 347 aa11.14□□□□□ -0.63
VMP1-208ENST00000588617 CKAP2LQ8IYA6 745 aa11.14□□□□□ -0.63
VMP1-208ENST00000588617 SUV39H2Q9H5I1 410 aa11.14□□□□□ -0.63
VMP1-208ENST00000588617 PPP4R2Q9NY27 417 aa11.14□□□□□ -0.63
VMP1-208ENST00000588617 GDF9O60383 454 aa11.13□□□□□ -0.63
VMP1-208ENST00000588617 SSBP05455 408 aaKnown RBP eCLIP11.13□□□□□ -0.63
VMP1-208ENST00000588617 GSTT1P30711 240 aa11.13□□□□□ -0.63
VMP1-208ENST00000588617 GRM2Q14416 872 aa11.13□□□□□ -0.63
VMP1-208ENST00000588617 ARSJQ5FYB0 599 aaPredicted RBP11.13□□□□□ -0.63
VMP1-208ENST00000588617 ZNF746Q6NUN9 644 aaPredicted RBP11.13□□□□□ -0.63
VMP1-208ENST00000588617 C1orf127Q8N9H9 656 aa11.13□□□□□ -0.63
VMP1-208ENST00000588617 RASGRP4Q8TDF6 673 aa11.13□□□□□ -0.63
VMP1-208ENST00000588617 CHRDQ9H2X0 955 aa11.13□□□□□ -0.63
VMP1-208ENST00000588617 POLMQ9NP87 494 aaPredicted RBP11.13□□□□□ -0.63
VMP1-208ENST00000588617 CNTN3Q9P232 1028 aa11.13□□□□□ -0.63
VMP1-208ENST00000588617 SPATA31C2B4DYI2 1134 aa11.12□□□□□ -0.63
VMP1-208ENST00000588617 XYLBO75191 536 aa11.12□□□□□ -0.63
VMP1-208ENST00000588617 EPB42P16452 691 aa11.12□□□□□ -0.63
VMP1-208ENST00000588617 NFE2L2Q16236 605 aa11.12□□□□□ -0.63
VMP1-208ENST00000588617 EGFLAMQ63HQ2 1017 aa11.12□□□□□ -0.63
VMP1-208ENST00000588617 RELL1Q8IUW5 271 aa11.12□□□□□ -0.63
VMP1-208ENST00000588617 MEIOBQ8N635 442 aa11.12□□□□□ -0.63
VMP1-208ENST00000588617 ZIC5Q96T25 663 aa11.12□□□□□ -0.63
VMP1-208ENST00000588617 RSRP1Q9BUV0 290 aa11.12□□□□□ -0.63
VMP1-208ENST00000588617 NOC4LQ9BVI4 516 aaKnown RBP11.12□□□□□ -0.63
VMP1-208ENST00000588617 J3QL48 77 aa11.11□□□□□ -0.63
VMP1-208ENST00000588617 POU4F2Q12837 409 aa11.11□□□□□ -0.63
VMP1-208ENST00000588617 KIAA0825Q8IV33 1275 aa11.11□□□□□ -0.63
VMP1-208ENST00000588617 NLGN1Q8N2Q7 840 aa11.11□□□□□ -0.63
VMP1-208ENST00000588617 PMEPA1Q969W9 287 aa11.11□□□□□ -0.63
VMP1-208ENST00000588617 MRFAP1L1Q96HT8 127 aa11.11□□□□□ -0.63
VMP1-208ENST00000588617 SEC16BQ96JE7 1060 aa11.11□□□□□ -0.63
VMP1-208ENST00000588617 TSEN34Q9BSV6 310 aaKnown RBP11.11□□□□□ -0.63
VMP1-208ENST00000588617 ABI2Q9NYB9 513 aaPredicted RBP11.11□□□□□ -0.63
VMP1-208ENST00000588617 TTC24A2A3L6 582 aaPredicted RBP11.1□□□□□ -0.63
VMP1-208ENST00000588617 TNFRSF10AO00220 468 aa11.1□□□□□ -0.63
VMP1-208ENST00000588617 ATP4AP20648 1035 aa11.1□□□□□ -0.63
VMP1-208ENST00000588617 PWP1Q13610 501 aa11.1□□□□□ -0.63
VMP1-208ENST00000588617 PKD2L1Q9P0L9 805 aa11.1□□□□□ -0.63
VMP1-208ENST00000588617 MINDY4BA8MYZ0 360 aa11.09□□□□□ -0.63
VMP1-208ENST00000588617 CES1P23141 567 aa11.09□□□□□ -0.63
VMP1-208ENST00000588617 TTC39BQ5VTQ0 682 aaPredicted RBP11.09□□□□□ -0.63
VMP1-208ENST00000588617 JAZF1Q86VZ6 243 aa11.09□□□□□ -0.63
VMP1-208ENST00000588617 CEP63Q96MT8 703 aa11.09□□□□□ -0.63
VMP1-208ENST00000588617 EHD4Q9H223 541 aa11.09□□□□□ -0.63
VMP1-208ENST00000588617 ADAMTS1Q9UHI8 967 aa11.09□□□□□ -0.63
VMP1-208ENST00000588617 POTECB2RU33 542 aa11.08□□□□□ -0.64
VMP1-208ENST00000588617 F6X3S4 739 aa11.08□□□□□ -0.64
VMP1-208ENST00000588617 K7ELQ4 463 aaPredicted RBP11.08□□□□□ -0.64
VMP1-208ENST00000588617 SPINT1O43278 529 aa11.08□□□□□ -0.64
VMP1-208ENST00000588617 GBP2P32456 591 aaPredicted RBP11.08□□□□□ -0.64
VMP1-208ENST00000588617 NASPP49321 788 aaPredicted RBP11.08□□□□□ -0.64
VMP1-208ENST00000588617 CCDC85BQ15834 202 aaPredicted RBP11.08□□□□□ -0.64
VMP1-208ENST00000588617 PRICKLE2Q7Z3G6 844 aa11.08□□□□□ -0.64
VMP1-208ENST00000588617 NLRP13Q86W25 1043 aa11.08□□□□□ -0.64
VMP1-208ENST00000588617 TRAK1Q9UPV9 953 aa11.08□□□□□ -0.64
VMP1-208ENST00000588617 GJA3Q9Y6H8 435 aa11.08□□□□□ -0.64
VMP1-208ENST00000588617 GRNP28799 593 aaKnown RBP11.07□□□□□ -0.64
VMP1-208ENST00000588617 CTSOP43234 321 aaPredicted RBP11.07□□□□□ -0.64
VMP1-208ENST00000588617 NFX1Q12986 1120 aaKnown RBP11.07□□□□□ -0.64
VMP1-208ENST00000588617 KIAA0319Q5VV43 1072 aa11.07□□□□□ -0.64
VMP1-208ENST00000588617 NBPF6Q5VWK0 638 aa11.07□□□□□ -0.64
VMP1-208ENST00000588617 NBPF4Q96M43 638 aa11.07□□□□□ -0.64
VMP1-208ENST00000588617 CLSTN1O94985 981 aa11.06□□□□□ -0.64
VMP1-208ENST00000588617 FCGRTP55899 365 aa11.06□□□□□ -0.64
VMP1-208ENST00000588617 TYRO3Q06418 890 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms