RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 LINS1Q8NG48 757 aa13.82□□□□□ -0.2
CLIP3-203ENST00000586457 NMRK2Q9NPI5 230 aa13.82□□□□□ -0.2
CLIP3-203ENST00000586457 ZNF521Q96K83 1311 aa13.82□□□□□ -0.2
CLIP3-203ENST00000586457 G3V3G9 751 aa13.81□□□□□ -0.2
CLIP3-203ENST00000586457 TOMM70O94826 608 aa13.81□□□□□ -0.2
CLIP3-203ENST00000586457 EIF6P56537 245 aaKnown RBP13.81□□□□□ -0.2
CLIP3-203ENST00000586457 RPS8P62241 208 aaKnown RBP13.81□□□□□ -0.2
CLIP3-203ENST00000586457 DCAF8Q5TAQ9 597 aa13.81□□□□□ -0.2
CLIP3-203ENST00000586457 UBE3BQ7Z3V4 1068 aa13.81□□□□□ -0.2
CLIP3-203ENST00000586457 CCDC85AQ96PX6 553 aaPredicted RBP13.81□□□□□ -0.2
CLIP3-203ENST00000586457 C9orf78Q9NZ63 289 aaPredicted RBP13.81□□□□□ -0.2
CLIP3-203ENST00000586457 NSFL1CQ9UNZ2 370 aaKnown RBP13.81□□□□□ -0.2
CLIP3-203ENST00000586457 TNRC6CQ9HCJ0 1690 aaKnown RBP13.81□□□□□ -0.2
CLIP3-203ENST00000586457 PPIP5K2O43314 1243 aa13.8□□□□□ -0.2
CLIP3-203ENST00000586457 IGKV5-2P06315 115 aa13.8□□□□□ -0.2
CLIP3-203ENST00000586457 HNRNPUQ00839 825 aaKnown RBP eCLIP13.8□□□□□ -0.2
CLIP3-203ENST00000586457 GCKRQ14397 625 aa13.8□□□□□ -0.2
CLIP3-203ENST00000586457 NIM1KQ8IY84 436 aa13.8□□□□□ -0.2
CLIP3-203ENST00000586457 CDCA7LQ96GN5 454 aa13.8□□□□□ -0.2
CLIP3-203ENST00000586457 CDC5LQ99459 802 aaKnown RBP13.8□□□□□ -0.2
CLIP3-203ENST00000586457 VPS33BQ9H267 617 aa13.8□□□□□ -0.2
CLIP3-203ENST00000586457 ANKIB1Q9P2G1 1089 aa13.8□□□□□ -0.2
CLIP3-203ENST00000586457 SBF1O95248 1867 aa13.8□□□□□ -0.2
CLIP3-203ENST00000586457 F6X3S4 739 aa13.79□□□□□ -0.2
CLIP3-203ENST00000586457 C6orf229H3BNL8 230 aa13.79□□□□□ -0.2
CLIP3-203ENST00000586457 PRELPP51888 382 aa13.79□□□□□ -0.2
CLIP3-203ENST00000586457 ANKRD18AQ8IVF6 992 aa13.79□□□□□ -0.2
CLIP3-203ENST00000586457 CDHR2Q9BYE9 1310 aa13.79□□□□□ -0.2
CLIP3-203ENST00000586457 FER1L6Q2WGJ9 1857 aa13.78□□□□□ -0.2
CLIP3-203ENST00000586457 CCDC88AQ3V6T2 1871 aa13.78□□□□□ -0.2
CLIP3-203ENST00000586457 IQCA1LA6NCM1 817 aa13.78□□□□□ -0.2
CLIP3-203ENST00000586457 H7C1W4 665 aa13.78□□□□□ -0.2
CLIP3-203ENST00000586457 KIF3CO14782 793 aa13.78□□□□□ -0.2
CLIP3-203ENST00000586457 CT47B1P0C2W7 299 aaPredicted RBP13.78□□□□□ -0.2
CLIP3-203ENST00000586457 CELF1Q92879 486 aaKnown RBP13.78□□□□□ -0.2
CLIP3-203ENST00000586457 EYA3Q99504 573 aa13.78□□□□□ -0.2
CLIP3-203ENST00000586457 SRCIN1Q9C0H9 1055 aa13.78□□□□□ -0.2
CLIP3-203ENST00000586457 SMC4Q9NTJ3 1288 aa13.78□□□□□ -0.2
CLIP3-203ENST00000586457 CHMP3Q9Y3E7 222 aa13.78□□□□□ -0.2
CLIP3-203ENST00000586457 GJA3Q9Y6H8 435 aa13.78□□□□□ -0.2
CLIP3-203ENST00000586457 CACNA1FO60840 1977 aa13.78□□□□□ -0.2
CLIP3-203ENST00000586457 DDNO94850 711 aaPredicted RBP13.77□□□□□ -0.21
CLIP3-203ENST00000586457 PTPRCP08575 1304 aa13.77□□□□□ -0.21
CLIP3-203ENST00000586457 IGHMBP2P38935 993 aaKnown RBP13.77□□□□□ -0.21
CLIP3-203ENST00000586457 CTSWP56202 376 aa13.77□□□□□ -0.21
CLIP3-203ENST00000586457 WASHC4Q2M389 1173 aa13.77□□□□□ -0.21
CLIP3-203ENST00000586457 ALDH1L2Q3SY69 923 aa13.77□□□□□ -0.21
CLIP3-203ENST00000586457 ALDH1L1O75891 902 aa13.76□□□□□ -0.21
CLIP3-203ENST00000586457 LMOD1P29536 600 aaPredicted RBP13.76□□□□□ -0.21
CLIP3-203ENST00000586457 AOC3Q16853 763 aa13.76□□□□□ -0.21
CLIP3-203ENST00000586457 TAF7LQ5H9L4 462 aa13.76□□□□□ -0.21
CLIP3-203ENST00000586457 MRPL50Q8N5N7 158 aaKnown RBP13.76□□□□□ -0.21
CLIP3-203ENST00000586457 SSH1Q8WYL5 1049 aa13.76□□□□□ -0.21
CLIP3-203ENST00000586457 MPHOSPH8Q99549 860 aa13.76□□□□□ -0.21
CLIP3-203ENST00000586457 BCL2L13Q9BXK5 485 aa13.76□□□□□ -0.21
CLIP3-203ENST00000586457 ZC3H12CQ9C0D7 883 aaKnown RBP13.76□□□□□ -0.21
CLIP3-203ENST00000586457 SEC31BQ9NQW1 1179 aa13.76□□□□□ -0.21
CLIP3-203ENST00000586457 FZD9O00144 591 aa13.75□□□□□ -0.21
CLIP3-203ENST00000586457 RIMBP2O15034 1052 aa13.75□□□□□ -0.21
CLIP3-203ENST00000586457 BEND3Q5T5X7 828 aa13.75□□□□□ -0.21
CLIP3-203ENST00000586457 GPC2Q8N158 579 aa13.75□□□□□ -0.21
CLIP3-203ENST00000586457 SMC1BQ8NDV3 1235 aa13.75□□□□□ -0.21
CLIP3-203ENST00000586457 TTLL11Q8NHH1 800 aa13.75□□□□□ -0.21
CLIP3-203ENST00000586457 RBM46Q8TBY0 533 aaKnown RBP13.75□□□□□ -0.21
CLIP3-203ENST00000586457 ZNRF3Q9ULT6 936 aa13.75□□□□□ -0.21
CLIP3-203ENST00000586457 CLEC11AQ9Y240 323 aa13.75□□□□□ -0.21
CLIP3-203ENST00000586457 ANKRD18BA2A2Z9 1011 aa13.74□□□□□ -0.21
CLIP3-203ENST00000586457 GRM8O00222 908 aa13.74□□□□□ -0.21
CLIP3-203ENST00000586457 FSTL1Q12841 308 aa13.74□□□□□ -0.21
CLIP3-203ENST00000586457 TNIP1Q15025 636 aa13.74□□□□□ -0.21
CLIP3-203ENST00000586457 RTFDC1Q9BY42 306 aaPredicted RBP13.74□□□□□ -0.21
CLIP3-203ENST00000586457 GREM2Q9H772 168 aa13.74□□□□□ -0.21
CLIP3-203ENST00000586457 HACL1Q9UJ83 578 aa13.74□□□□□ -0.21
CLIP3-203ENST00000586457 GGA1Q9UJY5 639 aa13.74□□□□□ -0.21
CLIP3-203ENST00000586457 LAMB2P55268 1798 aa13.73□□□□□ -0.21
CLIP3-203ENST00000586457 TIAM2Q8IVF5 1701 aa13.73□□□□□ -0.21
CLIP3-203ENST00000586457 DDX60Q8IY21 1712 aaKnown RBP13.73□□□□□ -0.21
CLIP3-203ENST00000586457 UFL1O94874 794 aa13.73□□□□□ -0.21
CLIP3-203ENST00000586457 GPSM2P81274 684 aa13.73□□□□□ -0.21
CLIP3-203ENST00000586457 KIAA2012Q0VF49 1180 aa13.73□□□□□ -0.21
CLIP3-203ENST00000586457 IFIT5Q13325 482 aaKnown RBP13.73□□□□□ -0.21
CLIP3-203ENST00000586457 CCDC57Q2TAC2 916 aa13.73□□□□□ -0.21
CLIP3-203ENST00000586457 EAPPQ56P03 285 aaPredicted RBP13.73□□□□□ -0.21
CLIP3-203ENST00000586457 TRMT2AQ8IZ69 625 aaKnown RBP13.73□□□□□ -0.21
CLIP3-203ENST00000586457 DICER1Q9UPY3 1922 aaKnown RBP13.72□□□□□ -0.21
CLIP3-203ENST00000586457 IPO8O15397 1037 aaKnown RBP13.72□□□□□ -0.21
CLIP3-203ENST00000586457 ITGA6P23229 1130 aa13.72□□□□□ -0.21
CLIP3-203ENST00000586457 KCNJ4P48050 445 aa13.72□□□□□ -0.21
CLIP3-203ENST00000586457 PNMA8AQ86V59 439 aaPredicted RBP13.72□□□□□ -0.21
CLIP3-203ENST00000586457 PLA2G12BQ9BX93 195 aa13.72□□□□□ -0.21
CLIP3-203ENST00000586457 API5Q9BZZ5 524 aaKnown RBP13.72□□□□□ -0.21
CLIP3-203ENST00000586457 BSDC1Q9NW68 430 aaPredicted RBP13.72□□□□□ -0.21
CLIP3-203ENST00000586457 XDHP47989 1333 aa13.71□□□□□ -0.21
CLIP3-203ENST00000586457 ZNF541Q9H0D2 1346 aa13.71□□□□□ -0.21
CLIP3-203ENST00000586457 HSPA6P17066 643 aa13.71□□□□□ -0.21
CLIP3-203ENST00000586457 ATP2B4P23634 1241 aa13.71□□□□□ -0.21
CLIP3-203ENST00000586457 CIAPIN1Q6FI81 312 aa13.71□□□□□ -0.21
CLIP3-203ENST00000586457 TBC1D16Q8TBP0 767 aa13.71□□□□□ -0.21
CLIP3-203ENST00000586457 ANKRD2Q9GZV1 360 aa13.71□□□□□ -0.21
CLIP3-203ENST00000586457 NOB1Q9ULX3 412 aaKnown RBP13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms