RNA–Protein interactions for RNA: ENST00000585229.1

SMCHD1-212, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 4

Gene SMCHD1, Length 555 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-212ENST00000585229 DZIP3Q86Y13 1208 aaKnown RBP12.44□□□□□ -0.42
SMCHD1-212ENST00000585229 CCDC125Q86Z20 511 aa12.44□□□□□ -0.42
SMCHD1-212ENST00000585229 CAMKK2Q96RR4 588 aa12.44□□□□□ -0.42
SMCHD1-212ENST00000585229 ISCA1Q9BUE6 129 aa12.44□□□□□ -0.42
SMCHD1-212ENST00000585229 NEURL1BA8MQ27 555 aa12.43□□□□□ -0.42
SMCHD1-212ENST00000585229 NEXNQ0ZGT2 675 aa12.43□□□□□ -0.42
SMCHD1-212ENST00000585229 TCIRG1Q13488 830 aa12.43□□□□□ -0.42
SMCHD1-212ENST00000585229 CAMK2BQ13554 666 aa12.43□□□□□ -0.42
SMCHD1-212ENST00000585229 MYD88Q99836 296 aa12.43□□□□□ -0.42
SMCHD1-212ENST00000585229 GNPATO15228 680 aa12.42□□□□□ -0.42
SMCHD1-212ENST00000585229 HSP90AB3PQ58FF7 597 aa12.42□□□□□ -0.42
SMCHD1-212ENST00000585229 LCE2DQ5TA82 110 aaPredicted RBP12.42□□□□□ -0.42
SMCHD1-212ENST00000585229 NPM2Q86SE8 214 aaKnown RBP12.42□□□□□ -0.42
SMCHD1-212ENST00000585229 AMIGO3Q86WK7 504 aa12.42□□□□□ -0.42
SMCHD1-212ENST00000585229 AK7Q96M32 723 aa12.42□□□□□ -0.42
SMCHD1-212ENST00000585229 MEIS3Q99687 375 aa12.42□□□□□ -0.42
SMCHD1-212ENST00000585229 USP44Q9H0E7 712 aa12.42□□□□□ -0.42
SMCHD1-212ENST00000585229 ZBTB3Q9H5J0 574 aa12.42□□□□□ -0.42
SMCHD1-212ENST00000585229 EMILIN3Q9NT22 766 aa12.42□□□□□ -0.42
SMCHD1-212ENST00000585229 RTCBQ9Y3I0 505 aaKnown RBP12.42□□□□□ -0.42
SMCHD1-212ENST00000585229 LAMB2P55268 1798 aa12.42□□□□□ -0.42
SMCHD1-212ENST00000585229 GNAI3P08754 354 aa12.41□□□□□ -0.42
SMCHD1-212ENST00000585229 SSFA2P28290 1259 aa12.41□□□□□ -0.42
SMCHD1-212ENST00000585229 BAG6P46379 1132 aa12.41□□□□□ -0.42
SMCHD1-212ENST00000585229 HLFQ16534 295 aa12.41□□□□□ -0.42
SMCHD1-212ENST00000585229 CWF19L2Q2TBE0 894 aaKnown RBP12.41□□□□□ -0.42
SMCHD1-212ENST00000585229 CLEC4GQ6UXB4 293 aa12.41□□□□□ -0.42
SMCHD1-212ENST00000585229 NARFQ9UHQ1 456 aa12.41□□□□□ -0.42
SMCHD1-212ENST00000585229 USP42Q9H9J4 1324 aaKnown RBP12.4□□□□□ -0.42
SMCHD1-212ENST00000585229 CASP7P55210 303 aa12.4□□□□□ -0.42
SMCHD1-212ENST00000585229 GCKRQ14397 625 aa12.4□□□□□ -0.42
SMCHD1-212ENST00000585229 ZNF827Q17R98 1081 aa12.4□□□□□ -0.42
SMCHD1-212ENST00000585229 ZNF34Q8IZ26 560 aa12.4□□□□□ -0.42
SMCHD1-212ENST00000585229 CCDC191Q8NCU4 936 aa12.4□□□□□ -0.42
SMCHD1-212ENST00000585229 TBC1D2BQ9UPU7 963 aa12.4□□□□□ -0.42
SMCHD1-212ENST00000585229 ZNF330Q9Y3S2 320 aaPredicted RBP12.4□□□□□ -0.42
SMCHD1-212ENST00000585229 PCDHB15Q9Y5E8 787 aa12.4□□□□□ -0.42
SMCHD1-212ENST00000585229 GRM8O00222 908 aa12.39□□□□□ -0.43
SMCHD1-212ENST00000585229 SLC34A2O95436 690 aa12.39□□□□□ -0.43
SMCHD1-212ENST00000585229 EN1Q05925 392 aaPredicted RBP12.39□□□□□ -0.43
SMCHD1-212ENST00000585229 SF3B2Q13435 895 aaKnown RBP12.39□□□□□ -0.43
SMCHD1-212ENST00000585229 EZH2Q15910 746 aaKnown RBP12.39□□□□□ -0.43
SMCHD1-212ENST00000585229 ARHGEF1Q92888 912 aaKnown RBP12.39□□□□□ -0.43
SMCHD1-212ENST00000585229 BCL2L12Q9HB09 334 aa12.39□□□□□ -0.43
SMCHD1-212ENST00000585229 WDR70Q9NW82 654 aa12.39□□□□□ -0.43
SMCHD1-212ENST00000585229 MYH3P11055 1940 aa12.39□□□□□ -0.43
SMCHD1-212ENST00000585229 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.38□□□□□ -0.43
SMCHD1-212ENST00000585229 ATP5J2-PTCD1G3V325 749 aa12.38□□□□□ -0.43
SMCHD1-212ENST00000585229 H7C1W4 665 aa12.38□□□□□ -0.43
SMCHD1-212ENST00000585229 GNAI2P04899 355 aa12.38□□□□□ -0.43
SMCHD1-212ENST00000585229 UBTFL1P0CB47 393 aaPredicted RBP12.38□□□□□ -0.43
SMCHD1-212ENST00000585229 DOK7Q18PE1 504 aa12.38□□□□□ -0.43
SMCHD1-212ENST00000585229 TRAPPC3LQ5T215 181 aa12.38□□□□□ -0.43
SMCHD1-212ENST00000585229 CWC25Q9NXE8 425 aaPredicted RBP12.38□□□□□ -0.43
SMCHD1-212ENST00000585229 HDAC5Q9UQL6 1122 aa12.38□□□□□ -0.43
SMCHD1-212ENST00000585229 ZNF652Q9Y2D9 606 aa12.38□□□□□ -0.43
SMCHD1-212ENST00000585229 UBN2Q6ZU65 1347 aa12.37□□□□□ -0.43
SMCHD1-212ENST00000585229 KDM2BQ8NHM5 1336 aa12.37□□□□□ -0.43
SMCHD1-212ENST00000585229 DDX60Q8IY21 1712 aaKnown RBP12.37□□□□□ -0.43
SMCHD1-212ENST00000585229 PCCAP05165 728 aaPredicted RBP12.37□□□□□ -0.43
SMCHD1-212ENST00000585229 NBPF7P0C2Y1 421 aaPredicted RBP12.37□□□□□ -0.43
SMCHD1-212ENST00000585229 HDAC1Q13547 482 aaPredicted RBP12.37□□□□□ -0.43
SMCHD1-212ENST00000585229 CEP85Q6P2H3 762 aa12.37□□□□□ -0.43
SMCHD1-212ENST00000585229 NLRP10Q86W26 655 aa12.37□□□□□ -0.43
SMCHD1-212ENST00000585229 RPAP2Q8IXW5 612 aaPredicted RBP12.37□□□□□ -0.43
SMCHD1-212ENST00000585229 ANKRD44Q8N8A2 993 aa12.37□□□□□ -0.43
SMCHD1-212ENST00000585229 FLAD1Q8NFF5 587 aa12.37□□□□□ -0.43
SMCHD1-212ENST00000585229 CASZ1Q86V15 1759 aa12.37□□□□□ -0.43
SMCHD1-212ENST00000585229 NRXN2Q9P2S2 1712 aa12.37□□□□□ -0.43
SMCHD1-212ENST00000585229 CDHR2Q9BYE9 1310 aa12.37□□□□□ -0.43
SMCHD1-212ENST00000585229 SNPHO15079 494 aa12.36□□□□□ -0.43
SMCHD1-212ENST00000585229 MTX1Q13505 466 aa12.36□□□□□ -0.43
SMCHD1-212ENST00000585229 E2F4Q16254 413 aa12.36□□□□□ -0.43
SMCHD1-212ENST00000585229 PARP10Q53GL7 1025 aa12.36□□□□□ -0.43
SMCHD1-212ENST00000585229 USPL1Q5W0Q7 1092 aa12.36□□□□□ -0.43
SMCHD1-212ENST00000585229 DEFB132Q7Z7B7 95 aa12.36□□□□□ -0.43
SMCHD1-212ENST00000585229 SIRT2Q8IXJ6 389 aa12.36□□□□□ -0.43
SMCHD1-212ENST00000585229 OXER1Q8TDS5 423 aa12.36□□□□□ -0.43
SMCHD1-212ENST00000585229 CCDC136Q96JN2 1154 aa12.36□□□□□ -0.43
SMCHD1-212ENST00000585229 C1orf115Q9H7X2 142 aa12.36□□□□□ -0.43
SMCHD1-212ENST00000585229 ANO8Q9HCE9 1232 aaPredicted RBP12.36□□□□□ -0.43
SMCHD1-212ENST00000585229 C9orf78Q9NZ63 289 aaPredicted RBP12.36□□□□□ -0.43
SMCHD1-212ENST00000585229 SRP68Q9UHB9 627 aaKnown RBP12.36□□□□□ -0.43
SMCHD1-212ENST00000585229 ZPR1O75312 459 aa12.35□□□□□ -0.43
SMCHD1-212ENST00000585229 RFC4P35249 363 aa12.35□□□□□ -0.43
SMCHD1-212ENST00000585229 B4GALNT3Q6L9W6 998 aa12.35□□□□□ -0.43
SMCHD1-212ENST00000585229 SMIM5Q71RC9 77 aa12.35□□□□□ -0.43
SMCHD1-212ENST00000585229 KCNV2Q8TDN2 545 aa12.35□□□□□ -0.43
SMCHD1-212ENST00000585229 PTCD2Q8WV60 388 aaKnown RBP12.35□□□□□ -0.43
SMCHD1-212ENST00000585229 UPF1Q92900 1129 aaKnown RBP eCLIP12.35□□□□□ -0.43
SMCHD1-212ENST00000585229 KAZALD1Q96I82 304 aa12.35□□□□□ -0.43
SMCHD1-212ENST00000585229 SUCLG2Q96I99 432 aa12.35□□□□□ -0.43
SMCHD1-212ENST00000585229 PLA2G12BQ9BX93 195 aa12.35□□□□□ -0.43
SMCHD1-212ENST00000585229 LRRFIP2Q9Y608 721 aaKnown RBP12.35□□□□□ -0.43
SMCHD1-212ENST00000585229 ST18O60284 1047 aa12.34□□□□□ -0.43
SMCHD1-212ENST00000585229 PHF14O94880 888 aa12.34□□□□□ -0.43
SMCHD1-212ENST00000585229 NTSR2O95665 410 aa12.34□□□□□ -0.43
SMCHD1-212ENST00000585229 SLC15A2Q16348 729 aa12.34□□□□□ -0.43
SMCHD1-212ENST00000585229 RABL6Q3YEC7 729 aaPredicted RBP12.34□□□□□ -0.43
SMCHD1-212ENST00000585229 ZBTB38Q8NAP3 1195 aaPredicted RBP12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms