RNA–Protein interactions for RNA: ENST00000583363.5

CDK5RAP3-228, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 4

Gene CDK5RAP3, Length 558 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-228ENST00000583363 NUTM1Q86Y26 1132 aa20.44■□□□□ 0.86
CDK5RAP3-228ENST00000583363 BICC1Q9H694 974 aaKnown RBP20.44■□□□□ 0.86
CDK5RAP3-228ENST00000583363 GTF2E1P29083 439 aaPredicted RBP20.43■□□□□ 0.86
CDK5RAP3-228ENST00000583363 RABL6Q3YEC7 729 aaPredicted RBP20.43■□□□□ 0.86
CDK5RAP3-228ENST00000583363 KIF3CO14782 793 aa20.42■□□□□ 0.86
CDK5RAP3-228ENST00000583363 PDE8AO60658 829 aa20.42■□□□□ 0.86
CDK5RAP3-228ENST00000583363 CSF1RP07333 972 aa20.42■□□□□ 0.86
CDK5RAP3-228ENST00000583363 HSP90B1P14625 803 aaKnown RBP20.42■□□□□ 0.86
CDK5RAP3-228ENST00000583363 MTX1Q13505 466 aa20.42■□□□□ 0.86
CDK5RAP3-228ENST00000583363 HDAC1Q13547 482 aaPredicted RBP20.42■□□□□ 0.86
CDK5RAP3-228ENST00000583363 IGHDP01880 384 aa20.41■□□□□ 0.86
CDK5RAP3-228ENST00000583363 HCLS1P14317 486 aaPredicted RBP20.41■□□□□ 0.86
CDK5RAP3-228ENST00000583363 B4GALNT3Q6L9W6 998 aa20.41■□□□□ 0.86
CDK5RAP3-228ENST00000583363 CCDC136Q96JN2 1154 aa20.41■□□□□ 0.86
CDK5RAP3-228ENST00000583363 RWDD1Q9H446 243 aaPredicted RBP20.41■□□□□ 0.86
CDK5RAP3-228ENST00000583363 PARP3Q9Y6F1 533 aa20.41■□□□□ 0.86
CDK5RAP3-228ENST00000583363 PNMA6EA0A0J9YXQ4 647 aa20.4■□□□□ 0.86
CDK5RAP3-228ENST00000583363 PRR5LQ6MZQ0 368 aa20.4■□□□□ 0.86
CDK5RAP3-228ENST00000583363 LMBR1LQ6UX01 489 aa20.4■□□□□ 0.86
CDK5RAP3-228ENST00000583363 C10orf71Q711Q0 1435 aa20.4■□□□□ 0.86
CDK5RAP3-228ENST00000583363 A0A0G2JLW4 131 aa20.39■□□□□ 0.85
CDK5RAP3-228ENST00000583363 TGFB2P61812 414 aa20.39■□□□□ 0.85
CDK5RAP3-228ENST00000583363 POLA2Q14181 598 aa20.39■□□□□ 0.85
CDK5RAP3-228ENST00000583363 CNBD1Q8NA66 436 aa20.39■□□□□ 0.85
CDK5RAP3-228ENST00000583363 TTLL11Q8NHH1 800 aa20.39■□□□□ 0.85
CDK5RAP3-228ENST00000583363 SSH3Q8TE77 659 aa20.39■□□□□ 0.85
CDK5RAP3-228ENST00000583363 BRCA1P38398 1863 aaKnown RBP20.39■□□□□ 0.85
CDK5RAP3-228ENST00000583363 SRGAP3O43295 1099 aa20.38■□□□□ 0.85
CDK5RAP3-228ENST00000583363 HMMRO75330 724 aa20.38■□□□□ 0.85
CDK5RAP3-228ENST00000583363 CCDC24Q8N4L8 307 aa20.38■□□□□ 0.85
CDK5RAP3-228ENST00000583363 BCS1LQ9Y276 419 aa20.38■□□□□ 0.85
CDK5RAP3-228ENST00000583363 NPHP1O15259 732 aa20.37■□□□□ 0.85
CDK5RAP3-228ENST00000583363 CTSWP56202 376 aa20.37■□□□□ 0.85
CDK5RAP3-228ENST00000583363 SF3B3Q15393 1217 aaKnown RBP20.37■□□□□ 0.85
CDK5RAP3-228ENST00000583363 NLRP3Q96P20 1036 aa20.37■□□□□ 0.85
CDK5RAP3-228ENST00000583363 ABCC12Q96J65 1359 aa20.36■□□□□ 0.85
CDK5RAP3-228ENST00000583363 ST5P78524 1137 aa20.36■□□□□ 0.85
CDK5RAP3-228ENST00000583363 DPEP1P16444 411 aa20.35■□□□□ 0.85
CDK5RAP3-228ENST00000583363 RFX5P48382 616 aaPredicted RBP20.35■□□□□ 0.85
CDK5RAP3-228ENST00000583363 C3orf67Q6ZVT6 689 aa20.35■□□□□ 0.85
CDK5RAP3-228ENST00000583363 DCTPP1Q9H773 170 aa20.35■□□□□ 0.85
CDK5RAP3-228ENST00000583363 CHMP3Q9Y3E7 222 aa20.34■□□□□ 0.85
CDK5RAP3-228ENST00000583363 KDM2BQ8NHM5 1336 aa20.33■□□□□ 0.85
CDK5RAP3-228ENST00000583363 CCDC152Q4G0S7 254 aa20.33■□□□□ 0.85
CDK5RAP3-228ENST00000583363 CCDC85AQ96PX6 553 aaPredicted RBP20.33■□□□□ 0.85
CDK5RAP3-228ENST00000583363 BRIP1Q9BX63 1249 aa20.33■□□□□ 0.85
CDK5RAP3-228ENST00000583363 GREM2Q9H772 168 aa20.33■□□□□ 0.85
CDK5RAP3-228ENST00000583363 DDX60Q8IY21 1712 aaKnown RBP20.33■□□□□ 0.84
CDK5RAP3-228ENST00000583363 KLRG2A4D1S0 409 aaPredicted RBP20.32■□□□□ 0.84
CDK5RAP3-228ENST00000583363 CCDC57Q2TAC2 916 aa20.32■□□□□ 0.84
CDK5RAP3-228ENST00000583363 FAM161AQ3B820 660 aa20.32■□□□□ 0.84
CDK5RAP3-228ENST00000583363 ARHGAP27Q6ZUM4 889 aa20.32■□□□□ 0.84
CDK5RAP3-228ENST00000583363 COPRSQ9NQ92 184 aa20.32■□□□□ 0.84
CDK5RAP3-228ENST00000583363 NOP58Q9Y2X3 529 aaKnown RBP20.32■□□□□ 0.84
CDK5RAP3-228ENST00000583363 RIC1Q4ADV7 1423 aa20.32■□□□□ 0.84
CDK5RAP3-228ENST00000583363 NRXN2Q9P2S2 1712 aa20.32■□□□□ 0.84
CDK5RAP3-228ENST00000583363 ARFGEF1Q9Y6D6 1849 aa20.32■□□□□ 0.84
CDK5RAP3-228ENST00000583363 KCNA3P22001 575 aa20.31■□□□□ 0.84
CDK5RAP3-228ENST00000583363 ITGA6P23229 1130 aa20.31■□□□□ 0.84
CDK5RAP3-228ENST00000583363 PTPN12Q05209 780 aaKnown RBP20.31■□□□□ 0.84
CDK5RAP3-228ENST00000583363 IFIT5Q13325 482 aaKnown RBP20.31■□□□□ 0.84
CDK5RAP3-228ENST00000583363 CENPQQ7L2Z9 268 aaPredicted RBP20.31■□□□□ 0.84
CDK5RAP3-228ENST00000583363 SMC5Q8IY18 1101 aa20.31■□□□□ 0.84
CDK5RAP3-228ENST00000583363 GCC1Q96CN9 775 aa20.31■□□□□ 0.84
CDK5RAP3-228ENST00000583363 RTL9Q8NET4 1388 aa20.31■□□□□ 0.84
CDK5RAP3-228ENST00000583363 ANKRD18BA2A2Z9 1011 aa20.3■□□□□ 0.84
CDK5RAP3-228ENST00000583363 SURF6O75683 361 aaKnown RBP20.3■□□□□ 0.84
CDK5RAP3-228ENST00000583363 PA2G4Q9UQ80 394 aaKnown RBP20.3■□□□□ 0.84
CDK5RAP3-228ENST00000583363 TOMM70O94826 608 aa20.29■□□□□ 0.84
CDK5RAP3-228ENST00000583363 CRY2Q49AN0 593 aa20.29■□□□□ 0.84
CDK5RAP3-228ENST00000583363 KLHDC4Q8TBB5 520 aa20.29■□□□□ 0.84
CDK5RAP3-228ENST00000583363 NMRK2Q9NPI5 230 aa20.29■□□□□ 0.84
CDK5RAP3-228ENST00000583363 SEC31BQ9NQW1 1179 aa20.29■□□□□ 0.84
CDK5RAP3-228ENST00000583363 MYH3P11055 1940 aa20.29■□□□□ 0.84
CDK5RAP3-228ENST00000583363 LAMB2P55268 1798 aa20.29■□□□□ 0.84
CDK5RAP3-228ENST00000583363 PDE6BP35913 854 aa20.28■□□□□ 0.84
CDK5RAP3-228ENST00000583363 ZNF594Q96JF6 807 aaPredicted RBP20.28■□□□□ 0.84
CDK5RAP3-228ENST00000583363 G3BP1Q13283 466 aaKnown RBP eCLIP20.27■□□□□ 0.84
CDK5RAP3-228ENST00000583363 HSP90AB4PQ58FF6 505 aa20.27■□□□□ 0.84
CDK5RAP3-228ENST00000583363 EXOC6BQ9Y2D4 811 aa20.27■□□□□ 0.84
CDK5RAP3-228ENST00000583363 RAB11FIP3O75154 756 aa20.26■□□□□ 0.83
CDK5RAP3-228ENST00000583363 HOXA10P31260 410 aaPredicted RBP20.26■□□□□ 0.83
CDK5RAP3-228ENST00000583363 APLP1P51693 650 aa20.26■□□□□ 0.83
CDK5RAP3-228ENST00000583363 TAF7LQ5H9L4 462 aa20.26■□□□□ 0.83
CDK5RAP3-228ENST00000583363 FBXO3Q9UK99 471 aa20.26■□□□□ 0.83
CDK5RAP3-228ENST00000583363 EYA2O00167 538 aa20.25■□□□□ 0.83
CDK5RAP3-228ENST00000583363 C9orf131Q5VYM1 1079 aa20.25■□□□□ 0.83
CDK5RAP3-228ENST00000583363 DDX46Q7L014 1031 aaKnown RBP20.25■□□□□ 0.83
CDK5RAP3-228ENST00000583363 RBM17Q96I25 401 aaKnown RBP20.25■□□□□ 0.83
CDK5RAP3-228ENST00000583363 CDC5LQ99459 802 aaKnown RBP20.25■□□□□ 0.83
CDK5RAP3-228ENST00000583363 PIM2Q9P1W9 311 aa20.25■□□□□ 0.83
CDK5RAP3-228ENST00000583363 PDZRN3Q9UPQ7 1066 aa20.25■□□□□ 0.83
CDK5RAP3-228ENST00000583363 CIAO1O76071 339 aa20.24■□□□□ 0.83
CDK5RAP3-228ENST00000583363 ATG9AQ7Z3C6 839 aa20.24■□□□□ 0.83
CDK5RAP3-228ENST00000583363 DNAJC5GQ8N7S2 189 aa20.24■□□□□ 0.83
CDK5RAP3-228ENST00000583363 RPGRQ92834 1020 aaKnown RBP20.24■□□□□ 0.83
CDK5RAP3-228ENST00000583363 PUS3Q9BZE2 481 aaKnown RBP20.24■□□□□ 0.83
CDK5RAP3-228ENST00000583363 SIL1Q9H173 461 aa20.24■□□□□ 0.83
CDK5RAP3-228ENST00000583363 TNRC6CQ9HCJ0 1690 aaKnown RBP20.23■□□□□ 0.83
CDK5RAP3-228ENST00000583363 SRGNP10124 158 aa20.23■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 200.4 ms