RNA–Protein interactions for RNA: ENST00000582122.1

TOP3A-212, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 4

Gene TOP3A, Length 553 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-212ENST00000582122 BCL2L13Q9BXK5 485 aa13.17□□□□□ -0.3
TOP3A-212ENST00000582122 ZC3H4Q9UPT8 1303 aaKnown RBP13.16□□□□□ -0.3
TOP3A-212ENST00000582122 GRM8O00222 908 aa13.16□□□□□ -0.3
TOP3A-212ENST00000582122 C21orf2O43822 256 aa13.16□□□□□ -0.3
TOP3A-212ENST00000582122 CTSWP56202 376 aa13.16□□□□□ -0.3
TOP3A-212ENST00000582122 GRAPQ13588 217 aa13.16□□□□□ -0.3
TOP3A-212ENST00000582122 UBE3BQ7Z3V4 1068 aa13.16□□□□□ -0.3
TOP3A-212ENST00000582122 GRAPLQ8TC17 118 aaPredicted RBP13.16□□□□□ -0.3
TOP3A-212ENST00000582122 C7orf43Q8WVR3 580 aa13.16□□□□□ -0.3
TOP3A-212ENST00000582122 CDC5LQ99459 802 aaKnown RBP13.16□□□□□ -0.3
TOP3A-212ENST00000582122 NOB1Q9ULX3 412 aaKnown RBP13.16□□□□□ -0.3
TOP3A-212ENST00000582122 COL11A2P13942 1736 aaPredicted RBP13.16□□□□□ -0.3
TOP3A-212ENST00000582122 PPEF1O14829 653 aaPredicted RBP13.15□□□□□ -0.3
TOP3A-212ENST00000582122 MS4A1P11836 297 aa13.15□□□□□ -0.3
TOP3A-212ENST00000582122 LMNB1P20700 586 aa13.15□□□□□ -0.3
TOP3A-212ENST00000582122 RTL5Q5HYW3 569 aaPredicted RBP13.15□□□□□ -0.3
TOP3A-212ENST00000582122 SP8Q8IXZ3 490 aa13.15□□□□□ -0.3
TOP3A-212ENST00000582122 SYNE4Q8N205 404 aa13.15□□□□□ -0.3
TOP3A-212ENST00000582122 DNAJC5GQ8N7S2 189 aa13.15□□□□□ -0.3
TOP3A-212ENST00000582122 VPS33BQ9H267 617 aa13.15□□□□□ -0.3
TOP3A-212ENST00000582122 TAOK3Q9H2K8 898 aa13.15□□□□□ -0.3
TOP3A-212ENST00000582122 NMRK2Q9NPI5 230 aa13.15□□□□□ -0.3
TOP3A-212ENST00000582122 ATP6V0A2Q9Y487 856 aa13.15□□□□□ -0.3
TOP3A-212ENST00000582122 WDR90Q96KV7 1748 aa13.15□□□□□ -0.3
TOP3A-212ENST00000582122 RTL9Q8NET4 1388 aa13.15□□□□□ -0.3
TOP3A-212ENST00000582122 FSTL1Q12841 308 aa13.14□□□□□ -0.31
TOP3A-212ENST00000582122 ATF7IPQ6VMQ6 1270 aa13.14□□□□□ -0.31
TOP3A-212ENST00000582122 SUPT20HQ8NEM7 779 aa13.14□□□□□ -0.31
TOP3A-212ENST00000582122 PSMD1Q99460 953 aa13.14□□□□□ -0.31
TOP3A-212ENST00000582122 TNRC6CQ9HCJ0 1690 aaKnown RBP13.14□□□□□ -0.31
TOP3A-212ENST00000582122 LAMB2P55268 1798 aa13.14□□□□□ -0.31
TOP3A-212ENST00000582122 UTYO14607 1347 aa13.13□□□□□ -0.31
TOP3A-212ENST00000582122 ABCC4O15439 1325 aa13.13□□□□□ -0.31
TOP3A-212ENST00000582122 KDM2BQ8NHM5 1336 aa13.13□□□□□ -0.31
TOP3A-212ENST00000582122 RPS8P62241 208 aaKnown RBP13.13□□□□□ -0.31
TOP3A-212ENST00000582122 FKBP4Q02790 459 aaKnown RBP eCLIP13.13□□□□□ -0.31
TOP3A-212ENST00000582122 C3orf67Q6ZVT6 689 aa13.13□□□□□ -0.31
TOP3A-212ENST00000582122 ANKRD18AQ8IVF6 992 aa13.13□□□□□ -0.31
TOP3A-212ENST00000582122 KLRG1Q96E93 195 aa13.13□□□□□ -0.31
TOP3A-212ENST00000582122 SLX4Q8IY92 1834 aa13.13□□□□□ -0.31
TOP3A-212ENST00000582122 CASP7P55210 303 aa13.12□□□□□ -0.31
TOP3A-212ENST00000582122 C9orf131Q5VYM1 1079 aa13.12□□□□□ -0.31
TOP3A-212ENST00000582122 ZKSCAN2Q63HK3 967 aa13.12□□□□□ -0.31
TOP3A-212ENST00000582122 TTLL11Q8NHH1 800 aa13.12□□□□□ -0.31
TOP3A-212ENST00000582122 DDX60Q8IY21 1712 aaKnown RBP13.12□□□□□ -0.31
TOP3A-212ENST00000582122 CSF1RP07333 972 aa13.11□□□□□ -0.31
TOP3A-212ENST00000582122 INTS3Q68E01 1043 aaKnown RBP13.11□□□□□ -0.31
TOP3A-212ENST00000582122 JMYQ8N9B5 988 aa13.11□□□□□ -0.31
TOP3A-212ENST00000582122 FRAT1Q92837 279 aaPredicted RBP13.11□□□□□ -0.31
TOP3A-212ENST00000582122 RNF181Q9P0P0 153 aa13.11□□□□□ -0.31
TOP3A-212ENST00000582122 ZNF219Q9P2Y4 722 aaPredicted RBP13.11□□□□□ -0.31
TOP3A-212ENST00000582122 ANKRD18BA2A2Z9 1011 aa13.1□□□□□ -0.31
TOP3A-212ENST00000582122 NFKBIEO00221 500 aa13.1□□□□□ -0.31
TOP3A-212ENST00000582122 BCAR3O75815 825 aa13.1□□□□□ -0.31
TOP3A-212ENST00000582122 GNAI3P08754 354 aa13.1□□□□□ -0.31
TOP3A-212ENST00000582122 IGHMBP2P38935 993 aaKnown RBP13.1□□□□□ -0.31
TOP3A-212ENST00000582122 FTSJ3Q8IY81 847 aaKnown RBP13.1□□□□□ -0.31
TOP3A-212ENST00000582122 MPNDQ8N594 471 aa13.1□□□□□ -0.31
TOP3A-212ENST00000582122 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.1□□□□□ -0.31
TOP3A-212ENST00000582122 MYH3P11055 1940 aa13.09□□□□□ -0.31
TOP3A-212ENST00000582122 UBTFL1P0CB47 393 aaPredicted RBP13.09□□□□□ -0.31
TOP3A-212ENST00000582122 TRIM27P14373 513 aa13.09□□□□□ -0.31
TOP3A-212ENST00000582122 IFIT5Q13325 482 aaKnown RBP13.09□□□□□ -0.31
TOP3A-212ENST00000582122 CCDC57Q2TAC2 916 aa13.09□□□□□ -0.31
TOP3A-212ENST00000582122 FER1L6Q2WGJ9 1857 aa13.09□□□□□ -0.31
TOP3A-212ENST00000582122 DPY19L2Q6NUT2 758 aa13.09□□□□□ -0.31
TOP3A-212ENST00000582122 DPP8Q6V1X1 898 aaPredicted RBP13.09□□□□□ -0.31
TOP3A-212ENST00000582122 JARID2Q92833 1246 aaPredicted RBP13.09□□□□□ -0.31
TOP3A-212ENST00000582122 MPHOSPH8Q99549 860 aa13.09□□□□□ -0.31
TOP3A-212ENST00000582122 RTFDC1Q9BY42 306 aaPredicted RBP13.09□□□□□ -0.31
TOP3A-212ENST00000582122 USP44Q9H0E7 712 aa13.09□□□□□ -0.31
TOP3A-212ENST00000582122 BSDC1Q9NW68 430 aaPredicted RBP13.09□□□□□ -0.31
TOP3A-212ENST00000582122 RCAN3Q9UKA8 241 aa13.09□□□□□ -0.31
TOP3A-212ENST00000582122 ITGA6P23229 1130 aa13.08□□□□□ -0.32
TOP3A-212ENST00000582122 FOXO4P98177 505 aa13.08□□□□□ -0.32
TOP3A-212ENST00000582122 RASSF7Q02833 373 aa13.08□□□□□ -0.32
TOP3A-212ENST00000582122 SMC1BQ8NDV3 1235 aa13.08□□□□□ -0.32
TOP3A-212ENST00000582122 JDP2Q8WYK2 163 aa13.08□□□□□ -0.32
TOP3A-212ENST00000582122 CELF1Q92879 486 aaKnown RBP13.08□□□□□ -0.32
TOP3A-212ENST00000582122 EYA3Q99504 573 aa13.08□□□□□ -0.32
TOP3A-212ENST00000582122 CHMP4BQ9H444 224 aaKnown RBP13.08□□□□□ -0.32
TOP3A-212ENST00000582122 GREM2Q9H772 168 aa13.08□□□□□ -0.32
TOP3A-212ENST00000582122 PODXL2Q9NZ53 605 aa13.08□□□□□ -0.32
TOP3A-212ENST00000582122 CACNA1SQ13698 1873 aa13.08□□□□□ -0.32
TOP3A-212ENST00000582122 NBPF7P0C2Y1 421 aaPredicted RBP13.07□□□□□ -0.32
TOP3A-212ENST00000582122 IARSP41252 1262 aaKnown RBP13.07□□□□□ -0.32
TOP3A-212ENST00000582122 RABL6Q3YEC7 729 aaPredicted RBP13.07□□□□□ -0.32
TOP3A-212ENST00000582122 TAF7LQ5H9L4 462 aa13.07□□□□□ -0.32
TOP3A-212ENST00000582122 LMBR1LQ6UX01 489 aa13.07□□□□□ -0.32
TOP3A-212ENST00000582122 DZIP1LQ8IYY4 767 aaKnown RBP13.07□□□□□ -0.32
TOP3A-212ENST00000582122 ANKRD2Q9GZV1 360 aa13.07□□□□□ -0.32
TOP3A-212ENST00000582122 SEC31BQ9NQW1 1179 aa13.07□□□□□ -0.32
TOP3A-212ENST00000582122 FAM161AQ3B820 660 aa13.06□□□□□ -0.32
TOP3A-212ENST00000582122 COL13A1Q5TAT6 717 aaPredicted RBP13.06□□□□□ -0.32
TOP3A-212ENST00000582122 ANKIB1Q9P2G1 1089 aa13.06□□□□□ -0.32
TOP3A-212ENST00000582122 NSFL1CQ9UNZ2 370 aaKnown RBP13.06□□□□□ -0.32
TOP3A-212ENST00000582122 CHMP3Q9Y3E7 222 aa13.06□□□□□ -0.32
TOP3A-212ENST00000582122 XDHP47989 1333 aa13.06□□□□□ -0.32
TOP3A-212ENST00000582122 SBF1O95248 1867 aa13.06□□□□□ -0.32
TOP3A-212ENST00000582122 SNED1Q8TER0 1413 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms