RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 PLA2G12BQ9BX93 195 aa12.94□□□□□ -0.34
SS18-217ENST00000580958 STAP2Q9UGK3 403 aa12.94□□□□□ -0.34
SS18-217ENST00000580958 COL24A1Q17RW2 1714 aa12.93□□□□□ -0.34
SS18-217ENST00000580958 AOX1Q06278 1338 aa12.93□□□□□ -0.34
SS18-217ENST00000580958 CDC45O75419 566 aa12.93□□□□□ -0.34
SS18-217ENST00000580958 GABBR2O75899 941 aa12.93□□□□□ -0.34
SS18-217ENST00000580958 TRMT112Q9UI30 125 aaKnown RBP12.93□□□□□ -0.34
SS18-217ENST00000580958 GNPATO15228 680 aa12.92□□□□□ -0.34
SS18-217ENST00000580958 RPS6KA4O75676 772 aa12.92□□□□□ -0.34
SS18-217ENST00000580958 TRIM37O94972 964 aa12.92□□□□□ -0.34
SS18-217ENST00000580958 SDSP20132 328 aa12.92□□□□□ -0.34
SS18-217ENST00000580958 TBC1D9Q6ZT07 1266 aa12.92□□□□□ -0.34
SS18-217ENST00000580958 SMIM5Q71RC9 77 aa12.92□□□□□ -0.34
SS18-217ENST00000580958 CLASRPQ8N2M8 674 aaKnown RBP12.92□□□□□ -0.34
SS18-217ENST00000580958 TNS1Q9HBL0 1735 aaKnown RBP12.92□□□□□ -0.34
SS18-217ENST00000580958 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.92□□□□□ -0.34
SS18-217ENST00000580958 FAM177BA6PVY3 158 aa12.91□□□□□ -0.34
SS18-217ENST00000580958 IRS4O14654 1257 aaPredicted RBP12.91□□□□□ -0.34
SS18-217ENST00000580958 MFAP1P55081 439 aaKnown RBP12.91□□□□□ -0.34
SS18-217ENST00000580958 PARP10Q53GL7 1025 aa12.91□□□□□ -0.34
SS18-217ENST00000580958 SUSD4Q5VX71 490 aa12.91□□□□□ -0.34
SS18-217ENST00000580958 AACSQ86V21 672 aa12.91□□□□□ -0.34
SS18-217ENST00000580958 FBXO41Q8TF61 875 aa12.91□□□□□ -0.34
SS18-217ENST00000580958 ZNF594Q96JF6 807 aaPredicted RBP12.91□□□□□ -0.34
SS18-217ENST00000580958 NIP7Q9Y221 180 aaKnown RBP eCLIP12.91□□□□□ -0.34
SS18-217ENST00000580958 ZNF652Q9Y2D9 606 aa12.91□□□□□ -0.34
SS18-217ENST00000580958 USP42Q9H9J4 1324 aaKnown RBP12.9□□□□□ -0.34
SS18-217ENST00000580958 CSF1RP07333 972 aa12.9□□□□□ -0.34
SS18-217ENST00000580958 IFIT2P09913 472 aaKnown RBP12.9□□□□□ -0.34
SS18-217ENST00000580958 RXRBP28702 533 aa12.9□□□□□ -0.34
SS18-217ENST00000580958 CCDC85AQ96PX6 553 aaPredicted RBP12.9□□□□□ -0.34
SS18-217ENST00000580958 UTP14AQ9BVJ6 771 aaKnown RBP12.9□□□□□ -0.34
SS18-217ENST00000580958 UPF2Q9HAU5 1272 aaKnown RBP12.9□□□□□ -0.34
SS18-217ENST00000580958 CREBZFQ9NS37 354 aa12.9□□□□□ -0.34
SS18-217ENST00000580958 LRRC4BQ9NT99 713 aa12.9□□□□□ -0.34
SS18-217ENST00000580958 NARFQ9UHQ1 456 aa12.9□□□□□ -0.34
SS18-217ENST00000580958 TAF1P21675 1872 aa12.89□□□□□ -0.35
SS18-217ENST00000580958 PDE8AO60658 829 aa12.89□□□□□ -0.35
SS18-217ENST00000580958 CTSWP56202 376 aa12.89□□□□□ -0.35
SS18-217ENST00000580958 TFCP2Q12800 502 aa12.89□□□□□ -0.35
SS18-217ENST00000580958 CLEC4GQ6UXB4 293 aa12.89□□□□□ -0.35
SS18-217ENST00000580958 PI4K2BQ8TCG2 481 aa12.89□□□□□ -0.35
SS18-217ENST00000580958 EAF2Q96CJ1 260 aaPredicted RBP12.89□□□□□ -0.35
SS18-217ENST00000580958 AK7Q96M32 723 aa12.89□□□□□ -0.35
SS18-217ENST00000580958 CCDC8Q9H0W5 538 aaPredicted RBP12.89□□□□□ -0.35
SS18-217ENST00000580958 BCL2L12Q9HB09 334 aa12.89□□□□□ -0.35
SS18-217ENST00000580958 RGS17Q9UGC6 210 aaPredicted RBP12.89□□□□□ -0.35
SS18-217ENST00000580958 SRP68Q9UHB9 627 aaKnown RBP12.89□□□□□ -0.35
SS18-217ENST00000580958 RTCBQ9Y3I0 505 aaKnown RBP12.89□□□□□ -0.35
SS18-217ENST00000580958 TTC41PQ6P2S7 1318 aa12.88□□□□□ -0.35
SS18-217ENST00000580958 SH3TC1Q8TE82 1336 aa12.88□□□□□ -0.35
SS18-217ENST00000580958 EYA2O00167 538 aa12.88□□□□□ -0.35
SS18-217ENST00000580958 RGL2O15211 777 aa12.88□□□□□ -0.35
SS18-217ENST00000580958 NTSR2O95665 410 aa12.88□□□□□ -0.35
SS18-217ENST00000580958 CLCN6P51797 869 aa12.88□□□□□ -0.35
SS18-217ENST00000580958 CCDC57Q2TAC2 916 aa12.88□□□□□ -0.35
SS18-217ENST00000580958 LRRC24Q50LG9 513 aa12.88□□□□□ -0.35
SS18-217ENST00000580958 USPL1Q5W0Q7 1092 aa12.88□□□□□ -0.35
SS18-217ENST00000580958 ATG9AQ7Z3C6 839 aa12.88□□□□□ -0.35
SS18-217ENST00000580958 AMIGO3Q86WK7 504 aa12.88□□□□□ -0.35
SS18-217ENST00000580958 TTLL11Q8NHH1 800 aa12.88□□□□□ -0.35
SS18-217ENST00000580958 GPATCH3Q96I76 525 aa12.88□□□□□ -0.35
SS18-217ENST00000580958 A0A1B0GUL6 1792 aa12.87□□□□□ -0.35
SS18-217ENST00000580958 TRIM6-TRIM34B2RNG4 842 aa12.87□□□□□ -0.35
SS18-217ENST00000580958 ZPR1O75312 459 aa12.87□□□□□ -0.35
SS18-217ENST00000580958 CIAO1O76071 339 aa12.87□□□□□ -0.35
SS18-217ENST00000580958 MAP4K4O95819 1239 aaPredicted RBP12.87□□□□□ -0.35
SS18-217ENST00000580958 HCLS1P14317 486 aaPredicted RBP12.87□□□□□ -0.35
SS18-217ENST00000580958 IL15P40933 162 aaPredicted RBP12.87□□□□□ -0.35
SS18-217ENST00000580958 IFIT5Q13325 482 aaKnown RBP12.87□□□□□ -0.35
SS18-217ENST00000580958 TNNI3KQ59H18 835 aa12.87□□□□□ -0.35
SS18-217ENST00000580958 TAF7LQ5H9L4 462 aa12.87□□□□□ -0.35
SS18-217ENST00000580958 SLC27A3Q5K4L6 730 aa12.87□□□□□ -0.35
SS18-217ENST00000580958 POTEAQ6S8J7 498 aa12.87□□□□□ -0.35
SS18-217ENST00000580958 RILPL2Q969X0 211 aa12.87□□□□□ -0.35
SS18-217ENST00000580958 PUS3Q9BZE2 481 aaKnown RBP12.87□□□□□ -0.35
SS18-217ENST00000580958 GREM2Q9H772 168 aa12.87□□□□□ -0.35
SS18-217ENST00000580958 ECHDC1Q9NTX5 307 aa12.87□□□□□ -0.35
SS18-217ENST00000580958 TLR7Q9NYK1 1049 aaKnown RBP12.87□□□□□ -0.35
SS18-217ENST00000580958 FPGT-TNNI3KV9GXZ4 949 aa12.87□□□□□ -0.35
SS18-217ENST00000580958 LRP5O75197 1615 aa12.87□□□□□ -0.35
SS18-217ENST00000580958 RGPD3A6NKT7 1758 aaPredicted RBP12.86□□□□□ -0.35
SS18-217ENST00000580958 RGPD4Q7Z3J3 1758 aa12.86□□□□□ -0.35
SS18-217ENST00000580958 ANKRD18BA2A2Z9 1011 aa12.86□□□□□ -0.35
SS18-217ENST00000580958 ERC2O15083 957 aa12.86□□□□□ -0.35
SS18-217ENST00000580958 GLRX3O76003 335 aaKnown RBP12.86□□□□□ -0.35
SS18-217ENST00000580958 PHF14O94880 888 aa12.86□□□□□ -0.35
SS18-217ENST00000580958 TRAPPC3LQ5T215 181 aa12.86□□□□□ -0.35
SS18-217ENST00000580958 TBC1D9BQ66K14 1250 aa12.86□□□□□ -0.35
SS18-217ENST00000580958 BICDL1Q6ZP65 573 aa12.86□□□□□ -0.35
SS18-217ENST00000580958 ARHGEF1Q92888 912 aaKnown RBP12.86□□□□□ -0.35
SS18-217ENST00000580958 TBC1D32Q96NH3 1257 aa12.86□□□□□ -0.35
SS18-217ENST00000580958 C22orf23Q9BZE7 217 aa12.86□□□□□ -0.35
SS18-217ENST00000580958 ZNF609O15014 1411 aa12.86□□□□□ -0.35
SS18-217ENST00000580958 ITGA6P23229 1130 aa12.85□□□□□ -0.35
SS18-217ENST00000580958 CASC1Q6TDU7 716 aa12.85□□□□□ -0.35
SS18-217ENST00000580958 IPO9Q96P70 1041 aaKnown RBP12.85□□□□□ -0.35
SS18-217ENST00000580958 RIC1Q4ADV7 1423 aa12.85□□□□□ -0.35
SS18-217ENST00000580958 ARAP2Q8WZ64 1704 aa12.85□□□□□ -0.35
SS18-217ENST00000580958 RFC4P35249 363 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 109.1 ms