RNA–Protein interactions for RNA: ENST00000580751.5

SS18-216, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-216ENST00000580751 DALRD3Q5D0E6 543 aaKnown RBP19.5■□□□□ 0.71
SS18-216ENST00000580751 TMEM57Q8N5G2 664 aa19.5■□□□□ 0.71
SS18-216ENST00000580751 TTLL6Q8N841 843 aa19.5■□□□□ 0.71
SS18-216ENST00000580751 RBM17Q96I25 401 aaKnown RBP19.5■□□□□ 0.71
SS18-216ENST00000580751 HDAC5Q9UQL6 1122 aa19.5■□□□□ 0.71
SS18-216ENST00000580751 PLIN1O60240 522 aa19.49■□□□□ 0.71
SS18-216ENST00000580751 RLBP1P12271 317 aa19.49■□□□□ 0.71
SS18-216ENST00000580751 DDX46Q7L014 1031 aaKnown RBP19.49■□□□□ 0.71
SS18-216ENST00000580751 CRAMP1Q96RY5 1269 aa19.49■□□□□ 0.71
SS18-216ENST00000580751 UBTFL1P0CB47 393 aaPredicted RBP19.48■□□□□ 0.71
SS18-216ENST00000580751 ITPRIPQ8IWB1 547 aa19.48■□□□□ 0.71
SS18-216ENST00000580751 GTF3C3Q9Y5Q9 886 aa19.48■□□□□ 0.71
SS18-216ENST00000580751 RTL9Q8NET4 1388 aa19.47■□□□□ 0.71
SS18-216ENST00000580751 DCAF8L1A6NGE4 600 aa19.47■□□□□ 0.71
SS18-216ENST00000580751 GNAI3P08754 354 aa19.47■□□□□ 0.71
SS18-216ENST00000580751 PRPF40BQ6NWY9 871 aaKnown RBP19.47■□□□□ 0.71
SS18-216ENST00000580751 PELP1Q8IZL8 1130 aaKnown RBP19.47■□□□□ 0.71
SS18-216ENST00000580751 PANK1Q8TE04 598 aa19.47■□□□□ 0.71
SS18-216ENST00000580751 WWC3Q9ULE0 1092 aa19.47■□□□□ 0.71
SS18-216ENST00000580751 BCS1LQ9Y276 419 aa19.47■□□□□ 0.71
SS18-216ENST00000580751 TTLL11Q8NHH1 800 aa19.46■□□□□ 0.71
SS18-216ENST00000580751 SUCLG2Q96I99 432 aa19.46■□□□□ 0.71
SS18-216ENST00000580751 MEIS3Q99687 375 aa19.46■□□□□ 0.71
SS18-216ENST00000580751 ARFGEF1Q9Y6D6 1849 aa19.46■□□□□ 0.71
SS18-216ENST00000580751 FOXO4P98177 505 aa19.45■□□□□ 0.7
SS18-216ENST00000580751 GRAPQ13588 217 aa19.45■□□□□ 0.7
SS18-216ENST00000580751 GPR162Q16538 588 aa19.45■□□□□ 0.7
SS18-216ENST00000580751 GRAPLQ8TC17 118 aaPredicted RBP19.45■□□□□ 0.7
SS18-216ENST00000580751 CHMP4BQ9H444 224 aaKnown RBP19.45■□□□□ 0.7
SS18-216ENST00000580751 CACNA1SQ13698 1873 aa19.45■□□□□ 0.7
SS18-216ENST00000580751 CSF1RP07333 972 aa19.44■□□□□ 0.7
SS18-216ENST00000580751 MVPQ14764 893 aaKnown RBP19.44■□□□□ 0.7
SS18-216ENST00000580751 CCDC85AQ96PX6 553 aaPredicted RBP19.44■□□□□ 0.7
SS18-216ENST00000580751 BBOX1O75936 387 aa19.43■□□□□ 0.7
SS18-216ENST00000580751 YBX3P16989 372 aaKnown RBP eCLIP19.43■□□□□ 0.7
SS18-216ENST00000580751 RABL6Q3YEC7 729 aaPredicted RBP19.43■□□□□ 0.7
SS18-216ENST00000580751 EPHA10Q5JZY3 1008 aa19.43■□□□□ 0.7
SS18-216ENST00000580751 SOGA3Q5TF21 947 aa19.43■□□□□ 0.7
SS18-216ENST00000580751 LMBR1LQ6UX01 489 aa19.43■□□□□ 0.7
SS18-216ENST00000580751 TMC4Q7Z404 712 aa19.43■□□□□ 0.7
SS18-216ENST00000580751 KAZALD1Q96I82 304 aa19.43■□□□□ 0.7
SS18-216ENST00000580751 CDC5LQ99459 802 aaKnown RBP19.43■□□□□ 0.7
SS18-216ENST00000580751 BICC1Q9H694 974 aaKnown RBP19.43■□□□□ 0.7
SS18-216ENST00000580751 GREM2Q9H772 168 aa19.43■□□□□ 0.7
SS18-216ENST00000580751 DDX19BQ9UMR2 479 aa19.43■□□□□ 0.7
SS18-216ENST00000580751 SLX4Q8IY92 1834 aa19.43■□□□□ 0.7
SS18-216ENST00000580751 PPEF1O14829 653 aaPredicted RBP19.42■□□□□ 0.7
SS18-216ENST00000580751 GRIN3BO60391 1043 aa19.42■□□□□ 0.7
SS18-216ENST00000580751 FAM161AQ3B820 660 aa19.42■□□□□ 0.7
SS18-216ENST00000580751 CHMP3Q9Y3E7 222 aa19.42■□□□□ 0.7
SS18-216ENST00000580751 GNAI2P04899 355 aa19.41■□□□□ 0.7
SS18-216ENST00000580751 TMX4Q9H1E5 349 aaPredicted RBP19.41■□□□□ 0.7
SS18-216ENST00000580751 SEC31BQ9NQW1 1179 aa19.41■□□□□ 0.7
SS18-216ENST00000580751 COG6Q9Y2V7 657 aa19.41■□□□□ 0.7
SS18-216ENST00000580751 LRRFIP2Q9Y608 721 aaKnown RBP19.41■□□□□ 0.7
SS18-216ENST00000580751 UTRNP46939 3433 aa19.4■□□□□ 0.7
SS18-216ENST00000580751 ANKRD18BA2A2Z9 1011 aa19.4■□□□□ 0.7
SS18-216ENST00000580751 ZBTB7BO15156 539 aaPredicted RBP19.4■□□□□ 0.7
SS18-216ENST00000580751 C21orf2O43822 256 aa19.4■□□□□ 0.7
SS18-216ENST00000580751 ITGA6P23229 1130 aa19.4■□□□□ 0.7
SS18-216ENST00000580751 RPS8P62241 208 aaKnown RBP19.4■□□□□ 0.7
SS18-216ENST00000580751 IFIT5Q13325 482 aaKnown RBP19.4■□□□□ 0.7
SS18-216ENST00000580751 C20orf194Q5TEA3 1177 aa19.4■□□□□ 0.7
SS18-216ENST00000580751 CC2D2BQ6DHV5 1058 aa19.4■□□□□ 0.7
SS18-216ENST00000580751 ANKRD18AQ8IVF6 992 aa19.4■□□□□ 0.7
SS18-216ENST00000580751 ANKRD44Q8N8A2 993 aa19.4■□□□□ 0.7
SS18-216ENST00000580751 CELF1Q92879 486 aaKnown RBP19.4■□□□□ 0.7
SS18-216ENST00000580751 CCDC57Q2TAC2 916 aa19.39■□□□□ 0.69
SS18-216ENST00000580751 CCDC93Q567U6 631 aa19.39■□□□□ 0.69
SS18-216ENST00000580751 C7orf43Q8WVR3 580 aa19.39■□□□□ 0.69
SS18-216ENST00000580751 ATP6V0A2Q9Y487 856 aa19.39■□□□□ 0.69
SS18-216ENST00000580751 TAF1P21675 1872 aa19.38■□□□□ 0.69
SS18-216ENST00000580751 IGHMBP2P38935 993 aaKnown RBP19.38■□□□□ 0.69
SS18-216ENST00000580751 GRIPAP1Q4V328 841 aa19.38■□□□□ 0.69
SS18-216ENST00000580751 ZNF219Q9P2Y4 722 aaPredicted RBP19.38■□□□□ 0.69
SS18-216ENST00000580751 LRRC37AA6NMS7 1700 aa19.37■□□□□ 0.69
SS18-216ENST00000580751 COL4A1P02462 1669 aa19.37■□□□□ 0.69
SS18-216ENST00000580751 TAF7LQ5H9L4 462 aa19.37■□□□□ 0.69
SS18-216ENST00000580751 SP8Q8IXZ3 490 aa19.37■□□□□ 0.69
SS18-216ENST00000580751 CRBNQ96SW2 442 aa19.37■□□□□ 0.69
SS18-216ENST00000580751 PPP4R2Q9NY27 417 aa19.37■□□□□ 0.69
SS18-216ENST00000580751 IRX6P78412 446 aaPredicted RBP19.36■□□□□ 0.69
SS18-216ENST00000580751 RTKN2Q8IZC4 609 aa19.36■□□□□ 0.69
SS18-216ENST00000580751 MPHOSPH8Q99549 860 aa19.36■□□□□ 0.69
SS18-216ENST00000580751 MTX1Q13505 466 aa19.35■□□□□ 0.69
SS18-216ENST00000580751 ARHGAP27Q6ZUM4 889 aa19.35■□□□□ 0.69
SS18-216ENST00000580751 BSDC1Q9NW68 430 aaPredicted RBP19.35■□□□□ 0.69
SS18-216ENST00000580751 EXOC6Q8TAG9 804 aa19.34■□□□□ 0.69
SS18-216ENST00000580751 ZBTB40Q9NUA8 1239 aa19.34■□□□□ 0.69
SS18-216ENST00000580751 SPEF2Q9C093 1822 aa19.34■□□□□ 0.69
SS18-216ENST00000580751 SNED1Q8TER0 1413 aa19.34■□□□□ 0.69
SS18-216ENST00000580751 FER1L6Q2WGJ9 1857 aa19.33■□□□□ 0.69
SS18-216ENST00000580751 OLFM4Q6UX06 510 aa19.33■□□□□ 0.68
SS18-216ENST00000580751 TAOK3Q9H2K8 898 aa19.33■□□□□ 0.68
SS18-216ENST00000580751 C1orf115Q9H7X2 142 aa19.33■□□□□ 0.68
SS18-216ENST00000580751 LTBP3Q9NS15 1303 aa19.32■□□□□ 0.68
SS18-216ENST00000580751 SRGAP3O43295 1099 aa19.32■□□□□ 0.68
SS18-216ENST00000580751 NFKBIEO00221 500 aa19.31■□□□□ 0.68
SS18-216ENST00000580751 FKBP4Q02790 459 aaKnown RBP eCLIP19.31■□□□□ 0.68
SS18-216ENST00000580751 DPP8Q6V1X1 898 aaPredicted RBP19.31■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 105.3 ms