RNA–Protein interactions for RNA: ENST00000580713.1

TOP3A-210, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 2

Gene TOP3A, Length 474 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-210ENST00000580713 PGAP2Q9UHJ9 254 aa14.29□□□□□ -0.12
TOP3A-210ENST00000580713 RAD17O75943 681 aa14.28□□□□□ -0.12
TOP3A-210ENST00000580713 HIRAP54198 1017 aaPredicted RBP14.28□□□□□ -0.12
TOP3A-210ENST00000580713 TNIP1Q15025 636 aa14.28□□□□□ -0.12
TOP3A-210ENST00000580713 KIF7Q2M1P5 1343 aa14.28□□□□□ -0.12
TOP3A-210ENST00000580713 KIF6Q6ZMV9 814 aa14.28□□□□□ -0.12
TOP3A-210ENST00000580713 TRPM4Q8TD43 1214 aa14.28□□□□□ -0.12
TOP3A-210ENST00000580713 VPS33BQ9H267 617 aa14.28□□□□□ -0.12
TOP3A-210ENST00000580713 MAP3K15Q6ZN16 1313 aa14.27□□□□□ -0.12
TOP3A-210ENST00000580713 ERVV-1B6SEH8 477 aa14.27□□□□□ -0.13
TOP3A-210ENST00000580713 H7C1D1 291 aa14.27□□□□□ -0.13
TOP3A-210ENST00000580713 TRPA1O75762 1119 aa14.27□□□□□ -0.13
TOP3A-210ENST00000580713 KIF23Q02241 960 aaPredicted RBP14.27□□□□□ -0.13
TOP3A-210ENST00000580713 SUSD4Q5VX71 490 aa14.27□□□□□ -0.13
TOP3A-210ENST00000580713 RGMBQ6NW40 437 aa14.27□□□□□ -0.13
TOP3A-210ENST00000580713 SAGE1Q9NXZ1 904 aa14.27□□□□□ -0.13
TOP3A-210ENST00000580713 CNOT7Q9UIV1 285 aaKnown RBP14.27□□□□□ -0.13
TOP3A-210ENST00000580713 RRP7AQ9Y3A4 280 aaKnown RBP14.27□□□□□ -0.13
TOP3A-210ENST00000580713 CDHR2Q9BYE9 1310 aa14.26□□□□□ -0.13
TOP3A-210ENST00000580713 DCTN1Q14203 1278 aa14.26□□□□□ -0.13
TOP3A-210ENST00000580713 DLK2Q6UY11 383 aa14.26□□□□□ -0.13
TOP3A-210ENST00000580713 DPP8Q6V1X1 898 aaPredicted RBP14.26□□□□□ -0.13
TOP3A-210ENST00000580713 C2orf69Q8N8R5 385 aa14.26□□□□□ -0.13
TOP3A-210ENST00000580713 NLRP3Q96P20 1036 aa14.26□□□□□ -0.13
TOP3A-210ENST00000580713 ZBTB3Q9H5J0 574 aa14.26□□□□□ -0.13
TOP3A-210ENST00000580713 ATP6V0A2Q9Y487 856 aa14.26□□□□□ -0.13
TOP3A-210ENST00000580713 RIC1Q4ADV7 1423 aa14.25□□□□□ -0.13
TOP3A-210ENST00000580713 MYL6BP14649 208 aa14.25□□□□□ -0.13
TOP3A-210ENST00000580713 ZNF157P51786 506 aaPredicted RBP14.25□□□□□ -0.13
TOP3A-210ENST00000580713 TTLL7Q6ZT98 887 aa14.25□□□□□ -0.13
TOP3A-210ENST00000580713 C3orf67Q6ZVT6 689 aa14.25□□□□□ -0.13
TOP3A-210ENST00000580713 MPNDQ8N594 471 aa14.25□□□□□ -0.13
TOP3A-210ENST00000580713 CCDC102AQ96A19 550 aa14.25□□□□□ -0.13
TOP3A-210ENST00000580713 GBA2Q9HCG7 927 aaPredicted RBP14.25□□□□□ -0.13
TOP3A-210ENST00000580713 RNF186Q9NXI6 227 aa14.25□□□□□ -0.13
TOP3A-210ENST00000580713 UBN2Q6ZU65 1347 aa14.24□□□□□ -0.13
TOP3A-210ENST00000580713 SHTN1A0MZ66 631 aa14.24□□□□□ -0.13
TOP3A-210ENST00000580713 KRT26Q7Z3Y9 468 aa14.24□□□□□ -0.13
TOP3A-210ENST00000580713 PPP1R42Q7Z4L9 355 aa14.24□□□□□ -0.13
TOP3A-210ENST00000580713 CTU1Q7Z7A3 348 aaKnown RBP14.24□□□□□ -0.13
TOP3A-210ENST00000580713 MICALL2Q8IY33 904 aa14.24□□□□□ -0.13
TOP3A-210ENST00000580713 RSPH6AQ9H0K4 717 aa14.24□□□□□ -0.13
TOP3A-210ENST00000580713 MIS18AQ9NYP9 233 aa14.24□□□□□ -0.13
TOP3A-210ENST00000580713 COL3A1P02461 1466 aaPredicted RBP14.24□□□□□ -0.13
TOP3A-210ENST00000580713 FAM155AB1AL88 458 aaPredicted RBP14.23□□□□□ -0.13
TOP3A-210ENST00000580713 NTSR2O95665 410 aa14.23□□□□□ -0.13
TOP3A-210ENST00000580713 KIAA2012Q0VF49 1180 aa14.23□□□□□ -0.13
TOP3A-210ENST00000580713 TAF7Q15545 349 aaPredicted RBP14.23□□□□□ -0.13
TOP3A-210ENST00000580713 CFAP53Q96M91 514 aa14.23□□□□□ -0.13
TOP3A-210ENST00000580713 RTFDC1Q9BY42 306 aaPredicted RBP14.23□□□□□ -0.13
TOP3A-210ENST00000580713 IBTKQ9P2D0 1353 aaPredicted RBP14.22□□□□□ -0.13
TOP3A-210ENST00000580713 TBC1D10BQ4KMP7 808 aaPredicted RBP14.22□□□□□ -0.13
TOP3A-210ENST00000580713 SAMD7Q7Z3H4 446 aa14.22□□□□□ -0.13
TOP3A-210ENST00000580713 PIP4P2Q8N4L2 257 aa14.22□□□□□ -0.13
TOP3A-210ENST00000580713 NUDCQ9Y266 331 aa14.22□□□□□ -0.13
TOP3A-210ENST00000580713 ABCC4O15439 1325 aa14.21□□□□□ -0.13
TOP3A-210ENST00000580713 PER1O15534 1290 aaPredicted RBP14.21□□□□□ -0.13
TOP3A-210ENST00000580713 BBOX1O75936 387 aa14.21□□□□□ -0.13
TOP3A-210ENST00000580713 U2AF1L5P0DN76 240 aaPredicted RBP14.21□□□□□ -0.13
TOP3A-210ENST00000580713 U2AF1Q01081 240 aaKnown RBP eCLIP14.21□□□□□ -0.13
TOP3A-210ENST00000580713 RBM26Q5T8P6 1007 aaKnown RBP14.21□□□□□ -0.13
TOP3A-210ENST00000580713 SP8Q8IXZ3 490 aa14.21□□□□□ -0.13
TOP3A-210ENST00000580713 ZNF34Q8IZ26 560 aa14.21□□□□□ -0.13
TOP3A-210ENST00000580713 DCPSQ96C86 337 aaKnown RBP14.21□□□□□ -0.13
TOP3A-210ENST00000580713 HPS5Q9UPZ3 1129 aa14.21□□□□□ -0.13
TOP3A-210ENST00000580713 ADM5C9JUS6 153 aa14.2□□□□□ -0.14
TOP3A-210ENST00000580713 PARP10Q53GL7 1025 aa14.2□□□□□ -0.14
TOP3A-210ENST00000580713 GIGYF2Q6Y7W6 1299 aaKnown RBP14.2□□□□□ -0.14
TOP3A-210ENST00000580713 CSRNP1Q96S65 589 aa14.2□□□□□ -0.14
TOP3A-210ENST00000580713 UTP14AQ9BVJ6 771 aaKnown RBP14.2□□□□□ -0.14
TOP3A-210ENST00000580713 HDAC9Q9UKV0 1011 aa14.2□□□□□ -0.14
TOP3A-210ENST00000580713 NUP98P52948 1817 aa14.2□□□□□ -0.14
TOP3A-210ENST00000580713 YDJCA8MPS7 323 aa14.19□□□□□ -0.14
TOP3A-210ENST00000580713 HTATSF1O43719 755 aaKnown RBP14.19□□□□□ -0.14
TOP3A-210ENST00000580713 DDX46Q7L014 1031 aaKnown RBP14.19□□□□□ -0.14
TOP3A-210ENST00000580713 PSMD14O00487 310 aa14.18□□□□□ -0.14
TOP3A-210ENST00000580713 SLC10A3P09131 477 aa14.18□□□□□ -0.14
TOP3A-210ENST00000580713 DPF2Q92785 391 aa14.18□□□□□ -0.14
TOP3A-210ENST00000580713 GCC1Q96CN9 775 aa14.18□□□□□ -0.14
TOP3A-210ENST00000580713 HCLS1P14317 486 aaPredicted RBP14.17□□□□□ -0.14
TOP3A-210ENST00000580713 FXR2P51116 673 aaKnown RBP eCLIP14.17□□□□□ -0.14
TOP3A-210ENST00000580713 PKN2Q16513 984 aaKnown RBP14.17□□□□□ -0.14
TOP3A-210ENST00000580713 SLC10A5Q5PT55 438 aa14.17□□□□□ -0.14
TOP3A-210ENST00000580713 SULF1Q8IWU6 871 aa14.17□□□□□ -0.14
TOP3A-210ENST00000580713 PNISRQ8TF01 805 aaKnown RBP14.17□□□□□ -0.14
TOP3A-210ENST00000580713 AKAP11Q9UKA4 1901 aa14.17□□□□□ -0.14
TOP3A-210ENST00000580713 RIMBP2O15034 1052 aa14.16□□□□□ -0.14
TOP3A-210ENST00000580713 EGFRP00533 1210 aa14.16□□□□□ -0.14
TOP3A-210ENST00000580713 GRAPQ13588 217 aa14.16□□□□□ -0.14
TOP3A-210ENST00000580713 WASHC4Q2M389 1173 aa14.16□□□□□ -0.14
TOP3A-210ENST00000580713 GRAPLQ8TC17 118 aaPredicted RBP14.16□□□□□ -0.14
TOP3A-210ENST00000580713 DBNDD1Q9H9R9 158 aa14.16□□□□□ -0.14
TOP3A-210ENST00000580713 EIF4A1P60842 406 aaKnown RBP14.15□□□□□ -0.14
TOP3A-210ENST00000580713 GGA3Q9NZ52 723 aa14.15□□□□□ -0.14
TOP3A-210ENST00000580713 LAMB4A4D0S4 1761 aa14.14□□□□□ -0.15
TOP3A-210ENST00000580713 C6orf229H3BNL8 230 aa14.14□□□□□ -0.15
TOP3A-210ENST00000580713 TBC1D8O95759 1140 aa14.14□□□□□ -0.15
TOP3A-210ENST00000580713 NEFMP07197 916 aa14.14□□□□□ -0.15
TOP3A-210ENST00000580713 RPS12P25398 132 aaKnown RBP14.14□□□□□ -0.15
TOP3A-210ENST00000580713 KIF4BQ2VIQ3 1234 aa14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms