RNA–Protein interactions for RNA: ENST00000580670.6

CDK5RAP3-219, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 5

Gene CDK5RAP3, Length 1,768 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-219ENST00000580670 LRRCC1Q9C099 1032 aa17.14■□□□□ 0.33
CDK5RAP3-219ENST00000580670 SMARCA5O60264 1052 aaPredicted RBP17.13■□□□□ 0.33
CDK5RAP3-219ENST00000580670 PTPN12Q05209 780 aaKnown RBP17.13■□□□□ 0.33
CDK5RAP3-219ENST00000580670 FAM161AQ3B820 660 aa17.13■□□□□ 0.33
CDK5RAP3-219ENST00000580670 TPTE2Q6XPS3 522 aa17.13■□□□□ 0.33
CDK5RAP3-219ENST00000580670 BCL11AQ9H165 835 aa17.13■□□□□ 0.33
CDK5RAP3-219ENST00000580670 COPRSQ9NQ92 184 aa17.13■□□□□ 0.33
CDK5RAP3-219ENST00000580670 DDX60Q8IY21 1712 aaKnown RBP17.13■□□□□ 0.33
CDK5RAP3-219ENST00000580670 PDE4AP27815 886 aa17.12■□□□□ 0.33
CDK5RAP3-219ENST00000580670 G3BP1Q13283 466 aaKnown RBP eCLIP17.12■□□□□ 0.33
CDK5RAP3-219ENST00000580670 CCDC57Q2TAC2 916 aa17.12■□□□□ 0.33
CDK5RAP3-219ENST00000580670 SIL1Q9H173 461 aa17.12■□□□□ 0.33
CDK5RAP3-219ENST00000580670 LAMB2P55268 1798 aa17.12■□□□□ 0.33
CDK5RAP3-219ENST00000580670 NPHP1O15259 732 aa17.12■□□□□ 0.33
CDK5RAP3-219ENST00000580670 TM4SF1P30408 202 aa17.12■□□□□ 0.33
CDK5RAP3-219ENST00000580670 IFIT5Q13325 482 aaKnown RBP17.12■□□□□ 0.33
CDK5RAP3-219ENST00000580670 SLC10A5Q5PT55 438 aa17.11■□□□□ 0.33
CDK5RAP3-219ENST00000580670 ERC1Q8IUD2 1116 aa17.11■□□□□ 0.33
CDK5RAP3-219ENST00000580670 NLGN1Q8N2Q7 840 aa17.11■□□□□ 0.33
CDK5RAP3-219ENST00000580670 RHPN1Q8TCX5 695 aa17.11■□□□□ 0.33
CDK5RAP3-219ENST00000580670 KIF1BPQ96EK5 621 aa17.11■□□□□ 0.33
CDK5RAP3-219ENST00000580670 GREM2Q9H772 168 aa17.11■□□□□ 0.33
CDK5RAP3-219ENST00000580670 ABCC12Q96J65 1359 aa17.1■□□□□ 0.33
CDK5RAP3-219ENST00000580670 CNBD1Q8NA66 436 aa17.1■□□□□ 0.33
CDK5RAP3-219ENST00000580670 ITGA6P23229 1130 aa17.1■□□□□ 0.33
CDK5RAP3-219ENST00000580670 QSER1Q2KHR3 1735 aa17.1■□□□□ 0.33
CDK5RAP3-219ENST00000580670 CCDC152Q4G0S7 254 aa17.1■□□□□ 0.33
CDK5RAP3-219ENST00000580670 TAF7LQ5H9L4 462 aa17.1■□□□□ 0.33
CDK5RAP3-219ENST00000580670 UPF1Q92900 1129 aaKnown RBP eCLIP17.1■□□□□ 0.33
CDK5RAP3-219ENST00000580670 ZNF594Q96JF6 807 aaPredicted RBP17.1■□□□□ 0.33
CDK5RAP3-219ENST00000580670 ANKRD18BA2A2Z9 1011 aa17.09■□□□□ 0.33
CDK5RAP3-219ENST00000580670 SERPINB2P05120 415 aa17.09■□□□□ 0.33
CDK5RAP3-219ENST00000580670 DDR1Q08345 913 aa17.09■□□□□ 0.33
CDK5RAP3-219ENST00000580670 CCDC24Q8N4L8 307 aa17.09■□□□□ 0.33
CDK5RAP3-219ENST00000580670 IL1RAPL2Q9NP60 686 aa17.09■□□□□ 0.33
CDK5RAP3-219ENST00000580670 POLRMTO00411 1230 aaKnown RBP17.08■□□□□ 0.33
CDK5RAP3-219ENST00000580670 C16orf71Q8IYS4 520 aaPredicted RBP17.08■□□□□ 0.33
CDK5RAP3-219ENST00000580670 SASH1O94885 1247 aa17.07■□□□□ 0.32
CDK5RAP3-219ENST00000580670 MSL1Q68DK7 614 aa17.07■□□□□ 0.32
CDK5RAP3-219ENST00000580670 C3orf67Q6ZVT6 689 aa17.07■□□□□ 0.32
CDK5RAP3-219ENST00000580670 EYA2O00167 538 aa17.07■□□□□ 0.32
CDK5RAP3-219ENST00000580670 SF3B3Q15393 1217 aaKnown RBP17.07■□□□□ 0.32
CDK5RAP3-219ENST00000580670 PRR5LQ6MZQ0 368 aa17.07■□□□□ 0.32
CDK5RAP3-219ENST00000580670 OTUD7AQ8TE49 926 aaPredicted RBP17.07■□□□□ 0.32
CDK5RAP3-219ENST00000580670 NLRP3Q96P20 1036 aa17.07■□□□□ 0.32
CDK5RAP3-219ENST00000580670 RTL9Q8NET4 1388 aa17.06■□□□□ 0.32
CDK5RAP3-219ENST00000580670 ST5P78524 1137 aa17.06■□□□□ 0.32
CDK5RAP3-219ENST00000580670 CIAO1O76071 339 aa17.05■□□□□ 0.32
CDK5RAP3-219ENST00000580670 MMP10P09238 476 aa17.05■□□□□ 0.32
CDK5RAP3-219ENST00000580670 IL15P40933 162 aaPredicted RBP17.05■□□□□ 0.32
CDK5RAP3-219ENST00000580670 LRRC24Q50LG9 513 aa17.05■□□□□ 0.32
CDK5RAP3-219ENST00000580670 ATG9AQ7Z3C6 839 aa17.05■□□□□ 0.32
CDK5RAP3-219ENST00000580670 PLEKHM2Q8IWE5 1019 aa17.05■□□□□ 0.32
CDK5RAP3-219ENST00000580670 PUS3Q9BZE2 481 aaKnown RBP17.05■□□□□ 0.32
CDK5RAP3-219ENST00000580670 SEC31BQ9NQW1 1179 aa17.05■□□□□ 0.32
CDK5RAP3-219ENST00000580670 FBXO3Q9UK99 471 aa17.05■□□□□ 0.32
CDK5RAP3-219ENST00000580670 CLASRPQ8N2M8 674 aaKnown RBP17.05■□□□□ 0.32
CDK5RAP3-219ENST00000580670 PARP3Q9Y6F1 533 aa17.05■□□□□ 0.32
CDK5RAP3-219ENST00000580670 CASZ1Q86V15 1759 aa17.04■□□□□ 0.32
CDK5RAP3-219ENST00000580670 TFCP2Q12800 502 aa17.04■□□□□ 0.32
CDK5RAP3-219ENST00000580670 LDHAL6AQ6ZMR3 332 aa17.04■□□□□ 0.32
CDK5RAP3-219ENST00000580670 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.04■□□□□ 0.32
CDK5RAP3-219ENST00000580670 PDGFDQ9GZP0 370 aaPredicted RBP17.03■□□□□ 0.32
CDK5RAP3-219ENST00000580670 CNNM1Q9NRU3 951 aa17.03■□□□□ 0.32
CDK5RAP3-219ENST00000580670 TNRC6CQ9HCJ0 1690 aaKnown RBP17.03■□□□□ 0.32
CDK5RAP3-219ENST00000580670 RIC1Q4ADV7 1423 aa17.03■□□□□ 0.32
CDK5RAP3-219ENST00000580670 AACSQ86V21 672 aa17.02■□□□□ 0.32
CDK5RAP3-219ENST00000580670 CDC5LQ99459 802 aaKnown RBP17.02■□□□□ 0.32
CDK5RAP3-219ENST00000580670 IFIT2P09913 472 aaKnown RBP17.02■□□□□ 0.31
CDK5RAP3-219ENST00000580670 IGHMBP2P38935 993 aaKnown RBP17.02■□□□□ 0.31
CDK5RAP3-219ENST00000580670 MPHOSPH8Q99549 860 aa17.02■□□□□ 0.31
CDK5RAP3-219ENST00000580670 SALL3Q9BXA9 1300 aa17.01■□□□□ 0.31
CDK5RAP3-219ENST00000580670 MX1P20591 662 aa17.01■□□□□ 0.31
CDK5RAP3-219ENST00000580670 PDE1AP54750 535 aa17.01■□□□□ 0.31
CDK5RAP3-219ENST00000580670 EAF2Q96CJ1 260 aaPredicted RBP17.01■□□□□ 0.31
CDK5RAP3-219ENST00000580670 CEP126Q9P2H0 1117 aa17.01■□□□□ 0.31
CDK5RAP3-219ENST00000580670 RIPOR2Q9Y4F9 1068 aa17.01■□□□□ 0.31
CDK5RAP3-219ENST00000580670 NRXN2Q9P2S2 1712 aa17.01■□□□□ 0.31
CDK5RAP3-219ENST00000580670 LRP5O75197 1615 aa17■□□□□ 0.31
CDK5RAP3-219ENST00000580670 TNNI3KQ59H18 835 aa17■□□□□ 0.31
CDK5RAP3-219ENST00000580670 ANKRD18AQ8IVF6 992 aa17■□□□□ 0.31
CDK5RAP3-219ENST00000580670 FPGT-TNNI3KV9GXZ4 949 aa17■□□□□ 0.31
CDK5RAP3-219ENST00000580670 METTL24Q5JXM2 366 aa17■□□□□ 0.31
CDK5RAP3-219ENST00000580670 DDX46Q7L014 1031 aaKnown RBP17■□□□□ 0.31
CDK5RAP3-219ENST00000580670 SLC16A10Q8TF71 515 aa17■□□□□ 0.31
CDK5RAP3-219ENST00000580670 OSBPL3Q9H4L5 887 aa17■□□□□ 0.31
CDK5RAP3-219ENST00000580670 TSHZ3Q63HK5 1081 aa16.99■□□□□ 0.31
CDK5RAP3-219ENST00000580670 CCDC8Q9H0W5 538 aaPredicted RBP16.99■□□□□ 0.31
CDK5RAP3-219ENST00000580670 STAP2Q9UGK3 403 aa16.99■□□□□ 0.31
CDK5RAP3-219ENST00000580670 SPEF2Q9C093 1822 aa16.99■□□□□ 0.31
CDK5RAP3-219ENST00000580670 RPGRQ92834 1020 aaKnown RBP16.98■□□□□ 0.31
CDK5RAP3-219ENST00000580670 CELF1Q92879 486 aaKnown RBP16.98■□□□□ 0.31
CDK5RAP3-219ENST00000580670 GPR108Q9NPR9 543 aa16.98■□□□□ 0.31
CDK5RAP3-219ENST00000580670 TAF1P21675 1872 aa16.98■□□□□ 0.31
CDK5RAP3-219ENST00000580670 COL4A1P02462 1669 aa16.98■□□□□ 0.31
CDK5RAP3-219ENST00000580670 MROH5Q6ZUA9 1318 aa16.98■□□□□ 0.31
CDK5RAP3-219ENST00000580670 CRY2Q49AN0 593 aa16.97■□□□□ 0.31
CDK5RAP3-219ENST00000580670 TTC22Q5TAA0 569 aa16.97■□□□□ 0.31
CDK5RAP3-219ENST00000580670 GPATCH3Q96I76 525 aa16.97■□□□□ 0.31
CDK5RAP3-219ENST00000580670 BRIP1Q9BX63 1249 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms