RNA–Protein interactions for RNA: ENST00000580095.5

TOP3A-209, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 1 (best)

Gene TOP3A, Length 2,929 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-209ENST00000580095 NAP1L2Q9ULW6 460 aaPredicted RBP12.53□□□□□ -0.4
TOP3A-209ENST00000580095 HDAC5Q9UQL6 1122 aa12.53□□□□□ -0.4
TOP3A-209ENST00000580095 FPGT-TNNI3KV9GXZ4 949 aa12.53□□□□□ -0.4
TOP3A-209ENST00000580095 TCHHQ07283 1943 aa12.53□□□□□ -0.4
TOP3A-209ENST00000580095 COL15A1P39059 1388 aa12.53□□□□□ -0.4
TOP3A-209ENST00000580095 EPB41L2O43491 1005 aaKnown RBP12.52□□□□□ -0.4
TOP3A-209ENST00000580095 PTMAP06454 111 aaKnown RBP12.52□□□□□ -0.4
TOP3A-209ENST00000580095 TIMM10P62072 90 aa12.52□□□□□ -0.4
TOP3A-209ENST00000580095 LARP1BQ659C4 914 aaKnown RBP12.52□□□□□ -0.4
TOP3A-209ENST00000580095 BLOC1S2Q6QNY1 142 aa12.52□□□□□ -0.4
TOP3A-209ENST00000580095 TFIP11Q9UBB9 837 aaKnown RBP12.52□□□□□ -0.4
TOP3A-209ENST00000580095 NBPF26B4DH59 902 aa12.52□□□□□ -0.41
TOP3A-209ENST00000580095 RFX5P48382 616 aaPredicted RBP12.52□□□□□ -0.41
TOP3A-209ENST00000580095 NBPF14Q5TI25 921 aa12.52□□□□□ -0.41
TOP3A-209ENST00000580095 NBPF10Q6P3W6 841 aaKnown RBP12.52□□□□□ -0.41
TOP3A-209ENST00000580095 NBPF15Q8N660 670 aa12.52□□□□□ -0.41
TOP3A-209ENST00000580095 SYAP1Q96A49 352 aaPredicted RBP12.52□□□□□ -0.41
TOP3A-209ENST00000580095 DCAF5Q96JK2 942 aa12.52□□□□□ -0.41
TOP3A-209ENST00000580095 N4BP2Q86UW6 1770 aaPredicted RBP12.52□□□□□ -0.41
TOP3A-209ENST00000580095 A0A0G2JLW4 131 aa12.51□□□□□ -0.41
TOP3A-209ENST00000580095 JAK2O60674 1132 aa12.51□□□□□ -0.41
TOP3A-209ENST00000580095 TAF5LO75529 589 aa12.51□□□□□ -0.41
TOP3A-209ENST00000580095 DDX11Q96FC9 970 aa12.51□□□□□ -0.41
TOP3A-209ENST00000580095 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.51□□□□□ -0.41
TOP3A-209ENST00000580095 TOB2Q14106 344 aaPredicted RBP12.51□□□□□ -0.41
TOP3A-209ENST00000580095 CAMK4Q16566 473 aa12.51□□□□□ -0.41
TOP3A-209ENST00000580095 GTF2E1P29083 439 aaPredicted RBP12.5□□□□□ -0.41
TOP3A-209ENST00000580095 GOLIM4O00461 696 aa12.5□□□□□ -0.41
TOP3A-209ENST00000580095 UBE2HP62256 183 aa12.5□□□□□ -0.41
TOP3A-209ENST00000580095 TOM1L2Q6ZVM7 507 aa12.5□□□□□ -0.41
TOP3A-209ENST00000580095 BBXQ8WY36 941 aaPredicted RBP12.5□□□□□ -0.41
TOP3A-209ENST00000580095 TM6SF1Q9BZW5 370 aa12.5□□□□□ -0.41
TOP3A-209ENST00000580095 RPS6KB1P23443 525 aa12.49□□□□□ -0.41
TOP3A-209ENST00000580095 CCDC183Q5T5S1 534 aa12.49□□□□□ -0.41
TOP3A-209ENST00000580095 KCNB2Q92953 911 aa12.49□□□□□ -0.41
TOP3A-209ENST00000580095 COPRSQ9NQ92 184 aa12.49□□□□□ -0.41
TOP3A-209ENST00000580095 STRN4Q9NRL3 753 aa12.49□□□□□ -0.41
TOP3A-209ENST00000580095 NOL7Q9UMY1 257 aaKnown RBP12.49□□□□□ -0.41
TOP3A-209ENST00000580095 R3HCC1Q9Y3T6 440 aaKnown RBP12.49□□□□□ -0.41
TOP3A-209ENST00000580095 LRRC24Q50LG9 513 aa12.49□□□□□ -0.41
TOP3A-209ENST00000580095 C17orf53Q8N3J3 647 aaPredicted RBP12.49□□□□□ -0.41
TOP3A-209ENST00000580095 PRDM11Q9NQV5 511 aa12.49□□□□□ -0.41
TOP3A-209ENST00000580095 SH2B1Q9NRF2 756 aaPredicted RBP12.49□□□□□ -0.41
TOP3A-209ENST00000580095 OVOS2A0A0G2JMS6 1433 aa12.48□□□□□ -0.41
TOP3A-209ENST00000580095 HIP1O00291 1037 aa12.48□□□□□ -0.41
TOP3A-209ENST00000580095 CHST3Q7LGC8 479 aa12.48□□□□□ -0.41
TOP3A-209ENST00000580095 ZSCAN31Q96LW9 406 aaPredicted RBP12.48□□□□□ -0.41
TOP3A-209ENST00000580095 HSP90B1P14625 803 aaKnown RBP12.48□□□□□ -0.41
TOP3A-209ENST00000580095 PSMA5P28066 241 aa12.48□□□□□ -0.41
TOP3A-209ENST00000580095 RNF20Q5VTR2 975 aa12.48□□□□□ -0.41
TOP3A-209ENST00000580095 TTC6Q86TZ1 520 aa12.48□□□□□ -0.41
TOP3A-209ENST00000580095 PUS3Q9BZE2 481 aaKnown RBP12.48□□□□□ -0.41
TOP3A-209ENST00000580095 MED23Q9ULK4 1368 aa12.48□□□□□ -0.41
TOP3A-209ENST00000580095 MST1RQ04912 1400 aa12.48□□□□□ -0.41
TOP3A-209ENST00000580095 C5P01031 1676 aa12.48□□□□□ -0.41
TOP3A-209ENST00000580095 PHF14O94880 888 aa12.48□□□□□ -0.41
TOP3A-209ENST00000580095 ATP5JP18859 108 aa12.48□□□□□ -0.41
TOP3A-209ENST00000580095 CEBPZQ03701 1054 aaKnown RBP12.48□□□□□ -0.41
TOP3A-209ENST00000580095 TMEM87AQ8NBN3 555 aa12.48□□□□□ -0.41
TOP3A-209ENST00000580095 SNRKQ9NRH2 765 aa12.48□□□□□ -0.41
TOP3A-209ENST00000580095 ZNF609O15014 1411 aa12.47□□□□□ -0.41
TOP3A-209ENST00000580095 CYP21A2P08686 494 aa12.47□□□□□ -0.41
TOP3A-209ENST00000580095 LIG1P18858 919 aa12.47□□□□□ -0.41
TOP3A-209ENST00000580095 PLBD2Q8NHP8 589 aa12.47□□□□□ -0.41
TOP3A-209ENST00000580095 ZKSCAN5Q9Y2L8 839 aa12.47□□□□□ -0.41
TOP3A-209ENST00000580095 ATP6V1DQ9Y5K8 247 aa12.47□□□□□ -0.41
TOP3A-209ENST00000580095 CASP7P55210 303 aa12.47□□□□□ -0.41
TOP3A-209ENST00000580095 FOXO4P98177 505 aa12.47□□□□□ -0.41
TOP3A-209ENST00000580095 HSP90AB3PQ58FF7 597 aa12.47□□□□□ -0.41
TOP3A-209ENST00000580095 Q6ZUG5 572 aa12.47□□□□□ -0.41
TOP3A-209ENST00000580095 CKAP2LQ8IYA6 745 aa12.47□□□□□ -0.41
TOP3A-209ENST00000580095 TAOK2Q9UL54 1235 aa12.47□□□□□ -0.41
TOP3A-209ENST00000580095 TRPM3Q9HCF6 1732 aaPredicted RBP12.47□□□□□ -0.41
TOP3A-209ENST00000580095 PHRF1Q9P1Y6 1649 aaKnown RBP12.46□□□□□ -0.41
TOP3A-209ENST00000580095 BRF1Q92994 677 aa12.46□□□□□ -0.41
TOP3A-209ENST00000580095 TTC12Q9H892 705 aaPredicted RBP12.46□□□□□ -0.41
TOP3A-209ENST00000580095 OFD1O75665 1012 aa12.46□□□□□ -0.42
TOP3A-209ENST00000580095 ADCY5O95622 1261 aa12.46□□□□□ -0.42
TOP3A-209ENST00000580095 RABL6Q3YEC7 729 aaPredicted RBP12.46□□□□□ -0.42
TOP3A-209ENST00000580095 STOX1Q6ZVD7 989 aa12.46□□□□□ -0.42
TOP3A-209ENST00000580095 ATG9AQ7Z3C6 839 aa12.46□□□□□ -0.42
TOP3A-209ENST00000580095 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.46□□□□□ -0.422e-7■■□□□ 13.3
TOP3A-209ENST00000580095 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.46□□□□□ -0.42
TOP3A-209ENST00000580095 SYNE4Q8N205 404 aa12.45□□□□□ -0.42
TOP3A-209ENST00000580095 ZCRB1Q8TBF4 217 aaKnown RBP12.45□□□□□ -0.42
TOP3A-209ENST00000580095 NEK1Q96PY6 1258 aa12.45□□□□□ -0.42
TOP3A-209ENST00000580095 AP5Z1O43299 807 aa12.45□□□□□ -0.42
TOP3A-209ENST00000580095 CCDC39Q9UFE4 941 aa12.45□□□□□ -0.42
TOP3A-209ENST00000580095 CRYBG1Q9Y4K1 1723 aa12.45□□□□□ -0.42
TOP3A-209ENST00000580095 SPATA31A3Q5VYP0 1347 aa12.45□□□□□ -0.42
TOP3A-209ENST00000580095 CCT2P78371 535 aaKnown RBP12.44□□□□□ -0.42
TOP3A-209ENST00000580095 FKBP4Q02790 459 aaKnown RBP eCLIP12.44□□□□□ -0.42
TOP3A-209ENST00000580095 TTLL5Q6EMB2 1281 aa12.44□□□□□ -0.42
TOP3A-209ENST00000580095 HAUS7Q99871 368 aa12.44□□□□□ -0.42
TOP3A-209ENST00000580095 FTOQ9C0B1 505 aaKnown RBP eCLIP12.44□□□□□ -0.42
TOP3A-209ENST00000580095 NCOA5Q9HCD5 579 aaKnown RBP12.44□□□□□ -0.42
TOP3A-209ENST00000580095 STRCP1A6NGW2 1772 aa12.44□□□□□ -0.42
TOP3A-209ENST00000580095 MCMDC2Q4G0Z9 681 aa12.44□□□□□ -0.42
TOP3A-209ENST00000580095 CADPS2Q86UW7 1296 aa12.44□□□□□ -0.42
TOP3A-209ENST00000580095 CWC25Q9NXE8 425 aaPredicted RBP12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 128.7 ms