RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 ELOA3DA6NLF2 546 aaPredicted RBP11.81□□□□□ -0.52
SS18-214ENST00000580003 TARSP26639 723 aaKnown RBP11.81□□□□□ -0.52
SS18-214ENST00000580003 KCNA1Q09470 495 aa11.81□□□□□ -0.52
SS18-214ENST00000580003 ELOA3BQ3SY89 546 aa11.81□□□□□ -0.52
SS18-214ENST00000580003 ELOA3Q8NG57 546 aa11.81□□□□□ -0.52
SS18-214ENST00000580003 TNFRSF25Q93038 417 aa11.81□□□□□ -0.52
SS18-214ENST00000580003 NUDT16Q96DE0 195 aaKnown RBP11.81□□□□□ -0.52
SS18-214ENST00000580003 UBE2OQ9C0C9 1292 aaKnown RBP11.81□□□□□ -0.52
SS18-214ENST00000580003 GNEQ9Y223 722 aaKnown RBP11.81□□□□□ -0.52
SS18-214ENST00000580003 ADARB2-AS1A8MUL3 147 aa11.8□□□□□ -0.52
SS18-214ENST00000580003 SHISA8B8ZZ34 492 aa11.8□□□□□ -0.52
SS18-214ENST00000580003 MAP3K6O95382 1288 aa11.8□□□□□ -0.52
SS18-214ENST00000580003 MZF1P28698 734 aaPredicted RBP11.8□□□□□ -0.52
SS18-214ENST00000580003 MARSP56192 900 aaKnown RBP11.8□□□□□ -0.52
SS18-214ENST00000580003 TRIP4Q15650 581 aaPredicted RBP11.8□□□□□ -0.52
SS18-214ENST00000580003 ADAMTS8Q9UP79 889 aa11.8□□□□□ -0.52
SS18-214ENST00000580003 PATL2C9JE40 543 aaKnown RBP11.79□□□□□ -0.52
SS18-214ENST00000580003 ADH7P40394 386 aa11.79□□□□□ -0.52
SS18-214ENST00000580003 NLRP13Q86W25 1043 aa11.79□□□□□ -0.52
SS18-214ENST00000580003 BTBD6Q96KE9 485 aa11.79□□□□□ -0.52
SS18-214ENST00000580003 PDGFAP04085 211 aa11.78□□□□□ -0.52
SS18-214ENST00000580003 RRAGCQ9HB90 399 aa11.78□□□□□ -0.52
SS18-214ENST00000580003 ZFATQ9P243 1243 aa11.78□□□□□ -0.52
SS18-214ENST00000580003 PCSK7Q16549 785 aa11.77□□□□□ -0.53
SS18-214ENST00000580003 C8orf34Q49A92 452 aa11.76□□□□□ -0.53
SS18-214ENST00000580003 CHSY3Q70JA7 882 aa11.76□□□□□ -0.53
SS18-214ENST00000580003 DHX32Q7L7V1 743 aaKnown RBP11.76□□□□□ -0.53
SS18-214ENST00000580003 DNAJB12Q9NXW2 375 aaKnown RBP11.76□□□□□ -0.53
SS18-214ENST00000580003 POLIQ9UNA4 740 aa11.76□□□□□ -0.53
SS18-214ENST00000580003 SOWAHDA6NJG2 315 aa11.75□□□□□ -0.53
SS18-214ENST00000580003 PSAPP07602 524 aa11.75□□□□□ -0.53
SS18-214ENST00000580003 USP5P45974 858 aa11.75□□□□□ -0.53
SS18-214ENST00000580003 MDFIQ99750 246 aa11.75□□□□□ -0.53
SS18-214ENST00000580003 TLR7Q9NYK1 1049 aaKnown RBP11.75□□□□□ -0.53
SS18-214ENST00000580003 IVNS1ABPQ9Y6Y0 642 aa11.75□□□□□ -0.53
SS18-214ENST00000580003 FZD6O60353 706 aa11.74□□□□□ -0.53
SS18-214ENST00000580003 TTC39BQ5VTQ0 682 aaPredicted RBP11.74□□□□□ -0.53
SS18-214ENST00000580003 PDE12Q6L8Q7 609 aaKnown RBP11.74□□□□□ -0.53
SS18-214ENST00000580003 ZNF438Q7Z4V0 828 aa11.74□□□□□ -0.53
SS18-214ENST00000580003 PODNQ7Z5L7 613 aa11.74□□□□□ -0.53
SS18-214ENST00000580003 AEBP1Q8IUX7 1158 aa11.74□□□□□ -0.53
SS18-214ENST00000580003 BRPF3Q9ULD4 1205 aa11.74□□□□□ -0.53
SS18-214ENST00000580003 SLC6A14Q9UN76 642 aa11.74□□□□□ -0.53
SS18-214ENST00000580003 MMP20O60882 483 aa11.73□□□□□ -0.53
SS18-214ENST00000580003 KANK3Q6NY19 840 aa11.73□□□□□ -0.53
SS18-214ENST00000580003 SCARF2Q96GP6 870 aaPredicted RBP11.73□□□□□ -0.53
SS18-214ENST00000580003 CCDC87Q9NVE4 849 aa11.73□□□□□ -0.53
SS18-214ENST00000580003 BIN2Q9UBW5 565 aaPredicted RBP11.73□□□□□ -0.53
SS18-214ENST00000580003 PLAURQ03405 335 aa11.72□□□□□ -0.53
SS18-214ENST00000580003 KCTD17Q8N5Z5 321 aa11.72□□□□□ -0.53
SS18-214ENST00000580003 GGNBP2Q9H3C7 697 aa11.72□□□□□ -0.53
SS18-214ENST00000580003 ELP3Q9H9T3 547 aa11.72□□□□□ -0.53
SS18-214ENST00000580003 NDUFB5O43674 189 aa11.71□□□□□ -0.53
SS18-214ENST00000580003 NRLP54845 237 aa11.71□□□□□ -0.53
SS18-214ENST00000580003 ARHGAP4P98171 946 aa11.71□□□□□ -0.53
SS18-214ENST00000580003 EHHADHQ08426 723 aa11.71□□□□□ -0.53
SS18-214ENST00000580003 BEND7Q8N7W2 519 aaPredicted RBP11.71□□□□□ -0.53
SS18-214ENST00000580003 TRPM4Q8TD43 1214 aa11.71□□□□□ -0.53
SS18-214ENST00000580003 ABI2Q9NYB9 513 aaPredicted RBP11.71□□□□□ -0.53
SS18-214ENST00000580003 GPLD1P80108 840 aa11.7□□□□□ -0.54
SS18-214ENST00000580003 ECM1Q16610 540 aa11.7□□□□□ -0.54
SS18-214ENST00000580003 MKL2Q9ULH7 1088 aa11.7□□□□□ -0.54
SS18-214ENST00000580003 SOX18P35713 384 aa11.69□□□□□ -0.54
SS18-214ENST00000580003 MLLT1Q03111 559 aaPredicted RBP11.69□□□□□ -0.54
SS18-214ENST00000580003 XKR5Q6UX68 686 aa11.69□□□□□ -0.54
SS18-214ENST00000580003 FAM35AQ86V20 835 aa11.69□□□□□ -0.54
SS18-214ENST00000580003 A6NHS1 94 aa11.68□□□□□ -0.54
SS18-214ENST00000580003 PHF20L1A8MW92 1017 aa11.68□□□□□ -0.54
SS18-214ENST00000580003 ZBTB42B2RXF5 422 aa11.68□□□□□ -0.54
SS18-214ENST00000580003 RNF225M0QZC1 329 aaPredicted RBP11.68□□□□□ -0.54
SS18-214ENST00000580003 PIK3R2O00459 728 aa11.68□□□□□ -0.54
SS18-214ENST00000580003 CPB1P15086 417 aa11.68□□□□□ -0.54
SS18-214ENST00000580003 OR13H1Q8NG92 308 aa11.68□□□□□ -0.54
SS18-214ENST00000580003 TMEM63CQ9P1W3 806 aa11.68□□□□□ -0.54
SS18-214ENST00000580003 SNRPNP63162 240 aaKnown RBP11.67□□□□□ -0.54
SS18-214ENST00000580003 HOMEZQ8IX15 550 aa11.67□□□□□ -0.54
SS18-214ENST00000580003 GJD3Q8N144 294 aa11.67□□□□□ -0.54
SS18-214ENST00000580003 NSUN5Q96P11 429 aaKnown RBP11.67□□□□□ -0.54
SS18-214ENST00000580003 STARD13Q9Y3M8 1113 aa11.67□□□□□ -0.54
SS18-214ENST00000580003 CNTNAP5Q8WYK1 1306 aa11.66□□□□□ -0.54
SS18-214ENST00000580003 M0R082 166 aa11.66□□□□□ -0.54
SS18-214ENST00000580003 ALBP02768 609 aa11.66□□□□□ -0.54
SS18-214ENST00000580003 EIF2AK2P19525 551 aaKnown RBP11.66□□□□□ -0.54
SS18-214ENST00000580003 DGKGP49619 791 aa11.66□□□□□ -0.54
SS18-214ENST00000580003 PSAPL1Q6NUJ1 521 aa11.66□□□□□ -0.54
SS18-214ENST00000580003 HFE2Q6ZVN8 426 aa11.66□□□□□ -0.54
SS18-214ENST00000580003 ZNF417Q8TAU3 575 aa11.66□□□□□ -0.54
SS18-214ENST00000580003 ZNF587Q96SQ5 575 aaPredicted RBP11.66□□□□□ -0.54
SS18-214ENST00000580003 RBSNQ9H1K0 784 aa11.66□□□□□ -0.54
SS18-214ENST00000580003 LOC102724428A0A0B4J2F2 783 aa11.65□□□□□ -0.54
SS18-214ENST00000580003 GHRHP01286 108 aa11.65□□□□□ -0.54
SS18-214ENST00000580003 HOXD8P13378 290 aaPredicted RBP11.65□□□□□ -0.54
SS18-214ENST00000580003 SIK1P57059 783 aa11.65□□□□□ -0.54
SS18-214ENST00000580003 HYAL2Q12891 473 aa11.65□□□□□ -0.54
SS18-214ENST00000580003 PDE3BQ13370 1112 aa11.65□□□□□ -0.54
SS18-214ENST00000580003 ELMSAN1Q6PJG2 1045 aa11.65□□□□□ -0.54
SS18-214ENST00000580003 MICALL1Q8N3F8 863 aa11.65□□□□□ -0.54
SS18-214ENST00000580003 TMC1Q8TDI8 760 aa11.65□□□□□ -0.54
SS18-214ENST00000580003 CITED4Q96RK1 184 aa11.65□□□□□ -0.54
SS18-214ENST00000580003 NAGPAQ9UK23 515 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms