RNA–Protein interactions for RNA: ENST00000579449.1

TSEN54-206, Transcript of tRNA splicing endonuclease subunit 54, humanhuman

TSL 2

Gene TSEN54, Length 786 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSEN54-206ENST00000579449 PDGFDQ9GZP0 370 aaPredicted RBP17.23■□□□□ 0.35
TSEN54-206ENST00000579449 PDZRN3Q9UPQ7 1066 aa17.23■□□□□ 0.35
TSEN54-206ENST00000579449 PA2G4Q9UQ80 394 aaKnown RBP17.23■□□□□ 0.35
TSEN54-206ENST00000579449 EXOC6BQ9Y2D4 811 aa17.23■□□□□ 0.35
TSEN54-206ENST00000579449 NRXN2Q9P2S2 1712 aa17.22■□□□□ 0.35
TSEN54-206ENST00000579449 SURF6O75683 361 aaKnown RBP17.22■□□□□ 0.35
TSEN54-206ENST00000579449 FAM161AQ3B820 660 aa17.22■□□□□ 0.35
TSEN54-206ENST00000579449 CNBD1Q8NA66 436 aa17.22■□□□□ 0.35
TSEN54-206ENST00000579449 NOP58Q9Y2X3 529 aaKnown RBP17.22■□□□□ 0.35
TSEN54-206ENST00000579449 MMP10P09238 476 aa17.21■□□□□ 0.35
TSEN54-206ENST00000579449 PTPN12Q05209 780 aaKnown RBP17.21■□□□□ 0.35
TSEN54-206ENST00000579449 ANKRD45Q5TZF3 282 aa17.21■□□□□ 0.35
TSEN54-206ENST00000579449 PRR5LQ6MZQ0 368 aa17.21■□□□□ 0.35
TSEN54-206ENST00000579449 KLHDC4Q8TBB5 520 aa17.21■□□□□ 0.35
TSEN54-206ENST00000579449 GREM2Q9H772 168 aa17.21■□□□□ 0.35
TSEN54-206ENST00000579449 APBB1O00213 710 aa17.2■□□□□ 0.34
TSEN54-206ENST00000579449 NUCB1Q02818 461 aa17.2■□□□□ 0.34
TSEN54-206ENST00000579449 CCDC57Q2TAC2 916 aa17.2■□□□□ 0.34
TSEN54-206ENST00000579449 C3orf67Q6ZVT6 689 aa17.2■□□□□ 0.34
TSEN54-206ENST00000579449 COPRSQ9NQ92 184 aa17.2■□□□□ 0.34
TSEN54-206ENST00000579449 PARP3Q9Y6F1 533 aa17.2■□□□□ 0.34
TSEN54-206ENST00000579449 TNRC6CQ9HCJ0 1690 aaKnown RBP17.2■□□□□ 0.34
TSEN54-206ENST00000579449 RAB11FIP3O75154 756 aa17.19■□□□□ 0.34
TSEN54-206ENST00000579449 ITGA6P23229 1130 aa17.19■□□□□ 0.34
TSEN54-206ENST00000579449 ST5P78524 1137 aa17.19■□□□□ 0.34
TSEN54-206ENST00000579449 IFIT5Q13325 482 aaKnown RBP17.19■□□□□ 0.34
TSEN54-206ENST00000579449 SF3B3Q15393 1217 aaKnown RBP17.19■□□□□ 0.34
TSEN54-206ENST00000579449 CCDC152Q4G0S7 254 aa17.19■□□□□ 0.34
TSEN54-206ENST00000579449 HSP90AB4PQ58FF6 505 aa17.19■□□□□ 0.34
TSEN54-206ENST00000579449 SKAP1Q86WV1 359 aa17.19■□□□□ 0.34
TSEN54-206ENST00000579449 SLC16A10Q8TF71 515 aa17.19■□□□□ 0.34
TSEN54-206ENST00000579449 ZNF594Q96JF6 807 aaPredicted RBP17.19■□□□□ 0.34
TSEN54-206ENST00000579449 NLRP3Q96P20 1036 aa17.19■□□□□ 0.34
TSEN54-206ENST00000579449 SIL1Q9H173 461 aa17.19■□□□□ 0.34
TSEN54-206ENST00000579449 ANKRD18BA2A2Z9 1011 aa17.18■□□□□ 0.34
TSEN54-206ENST00000579449 G3BP1Q13283 466 aaKnown RBP eCLIP17.18■□□□□ 0.34
TSEN54-206ENST00000579449 OS9Q13438 667 aaPredicted RBP17.18■□□□□ 0.34
TSEN54-206ENST00000579449 R3HDM1Q15032 1099 aaKnown RBP17.18■□□□□ 0.34
TSEN54-206ENST00000579449 CHD1LQ86WJ1 897 aa17.18■□□□□ 0.34
TSEN54-206ENST00000579449 RIC1Q4ADV7 1423 aa17.18■□□□□ 0.34
TSEN54-206ENST00000579449 RTL9Q8NET4 1388 aa17.17■□□□□ 0.34
TSEN54-206ENST00000579449 SMARCA5O60264 1052 aaPredicted RBP17.17■□□□□ 0.34
TSEN54-206ENST00000579449 TAF1P21675 1872 aa17.17■□□□□ 0.34
TSEN54-206ENST00000579449 TAF7LQ5H9L4 462 aa17.17■□□□□ 0.34
TSEN54-206ENST00000579449 ANKRD31Q8N7Z5 1873 aa17.17■□□□□ 0.34
TSEN54-206ENST00000579449 LNPKQ9C0E8 428 aa17.17■□□□□ 0.34
TSEN54-206ENST00000579449 SPEF2Q9C093 1822 aa17.17■□□□□ 0.34
TSEN54-206ENST00000579449 KIF1BPQ96EK5 621 aa17.16■□□□□ 0.34
TSEN54-206ENST00000579449 LRRCC1Q9C099 1032 aa17.16■□□□□ 0.34
TSEN54-206ENST00000579449 SEC31BQ9NQW1 1179 aa17.16■□□□□ 0.34
TSEN54-206ENST00000579449 ZBTB47Q9UFB7 747 aaPredicted RBP17.16■□□□□ 0.34
TSEN54-206ENST00000579449 ERC1Q8IUD2 1116 aa17.15■□□□□ 0.34
TSEN54-206ENST00000579449 RHPN1Q8TCX5 695 aa17.15■□□□□ 0.34
TSEN54-206ENST00000579449 EYA2O00167 538 aa17.14■□□□□ 0.33
TSEN54-206ENST00000579449 SASH1O94885 1247 aa17.14■□□□□ 0.33
TSEN54-206ENST00000579449 PDE4AP27815 886 aa17.14■□□□□ 0.33
TSEN54-206ENST00000579449 LRRC24Q50LG9 513 aa17.14■□□□□ 0.33
TSEN54-206ENST00000579449 ATG9AQ7Z3C6 839 aa17.14■□□□□ 0.33
TSEN54-206ENST00000579449 PUS3Q9BZE2 481 aaKnown RBP17.14■□□□□ 0.33
TSEN54-206ENST00000579449 BCL11AQ9H165 835 aa17.14■□□□□ 0.33
TSEN54-206ENST00000579449 FBXO3Q9UK99 471 aa17.14■□□□□ 0.33
TSEN54-206ENST00000579449 PSDA5PKW4 1024 aaPredicted RBP17.13■□□□□ 0.33
TSEN54-206ENST00000579449 CIAO1O76071 339 aa17.13■□□□□ 0.33
TSEN54-206ENST00000579449 ZBTB7AO95365 584 aa17.13■□□□□ 0.33
TSEN54-206ENST00000579449 IL1RAPL2Q9NP60 686 aa17.13■□□□□ 0.33
TSEN54-206ENST00000579449 LRP5O75197 1615 aa17.13■□□□□ 0.33
TSEN54-206ENST00000579449 COL4A1P02462 1669 aa17.13■□□□□ 0.33
TSEN54-206ENST00000579449 IL15P40933 162 aaPredicted RBP17.12■□□□□ 0.33
TSEN54-206ENST00000579449 RGS3P49796 1198 aa17.12■□□□□ 0.33
TSEN54-206ENST00000579449 LDHAL6AQ6ZMR3 332 aa17.12■□□□□ 0.33
TSEN54-206ENST00000579449 C16orf71Q8IYS4 520 aaPredicted RBP17.12■□□□□ 0.33
TSEN54-206ENST00000579449 CDC5LQ99459 802 aaKnown RBP17.12■□□□□ 0.33
TSEN54-206ENST00000579449 BRIP1Q9BX63 1249 aa17.12■□□□□ 0.33
TSEN54-206ENST00000579449 KLRG2A4D1S0 409 aaPredicted RBP17.11■□□□□ 0.33
TSEN54-206ENST00000579449 IGHMBP2P38935 993 aaKnown RBP17.11■□□□□ 0.33
TSEN54-206ENST00000579449 TFCP2Q12800 502 aa17.11■□□□□ 0.33
TSEN54-206ENST00000579449 CRY2Q49AN0 593 aa17.11■□□□□ 0.33
TSEN54-206ENST00000579449 DDX46Q7L014 1031 aaKnown RBP17.11■□□□□ 0.33
TSEN54-206ENST00000579449 ANKRD18AQ8IVF6 992 aa17.11■□□□□ 0.33
TSEN54-206ENST00000579449 MTFR1LQ9H019 292 aa17.11■□□□□ 0.33
TSEN54-206ENST00000579449 CNNM1Q9NRU3 951 aa17.11■□□□□ 0.33
TSEN54-206ENST00000579449 ATF5Q9Y2D1 282 aaPredicted RBP17.11■□□□□ 0.33
TSEN54-206ENST00000579449 RIPOR2Q9Y4F9 1068 aa17.11■□□□□ 0.33
TSEN54-206ENST00000579449 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.11■□□□□ 0.33
TSEN54-206ENST00000579449 RPGRQ92834 1020 aaKnown RBP17.1■□□□□ 0.33
TSEN54-206ENST00000579449 CELF1Q92879 486 aaKnown RBP17.1■□□□□ 0.33
TSEN54-206ENST00000579449 MPHOSPH8Q99549 860 aa17.1■□□□□ 0.33
TSEN54-206ENST00000579449 PDE6BP35913 854 aa17.09■□□□□ 0.33
TSEN54-206ENST00000579449 CLASRPQ8N2M8 674 aaKnown RBP17.09■□□□□ 0.33
TSEN54-206ENST00000579449 RBM17Q96I25 401 aaKnown RBP17.09■□□□□ 0.33
TSEN54-206ENST00000579449 COL11A2P13942 1736 aaPredicted RBP17.08■□□□□ 0.32
TSEN54-206ENST00000579449 RPS8P62241 208 aaKnown RBP17.08■□□□□ 0.32
TSEN54-206ENST00000579449 GRAPQ13588 217 aa17.08■□□□□ 0.32
TSEN54-206ENST00000579449 GRAPLQ8TC17 118 aaPredicted RBP17.08■□□□□ 0.32
TSEN54-206ENST00000579449 OTUD7AQ8TE49 926 aaPredicted RBP17.08■□□□□ 0.32
TSEN54-206ENST00000579449 CEP126Q9P2H0 1117 aa17.08■□□□□ 0.32
TSEN54-206ENST00000579449 POLD1P28340 1107 aa17.07■□□□□ 0.32
TSEN54-206ENST00000579449 METTL24Q5JXM2 366 aa17.07■□□□□ 0.32
TSEN54-206ENST00000579449 AACSQ86V21 672 aa17.07■□□□□ 0.32
TSEN54-206ENST00000579449 PLEKHM2Q8IWE5 1019 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms