RNA–Protein interactions for RNA: ENST00000576241.1

CCDC40-216, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 714 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-216ENST00000576241 C3orf67Q6ZVT6 689 aa17.79■□□□□ 0.44
CCDC40-216ENST00000576241 NLRP10Q86W26 655 aa17.79■□□□□ 0.44
CCDC40-216ENST00000576241 TRMT112Q9UI30 125 aaKnown RBP17.79■□□□□ 0.44
CCDC40-216ENST00000576241 SNED1Q8TER0 1413 aa17.79■□□□□ 0.44
CCDC40-216ENST00000576241 TRPM7Q96QT4 1865 aa17.78■□□□□ 0.44
CCDC40-216ENST00000576241 FZD9O00144 591 aa17.78■□□□□ 0.44
CCDC40-216ENST00000576241 APAF1O14727 1248 aa17.78■□□□□ 0.44
CCDC40-216ENST00000576241 CA12O43570 354 aa17.78■□□□□ 0.44
CCDC40-216ENST00000576241 SOX10P56693 466 aa17.78■□□□□ 0.44
CCDC40-216ENST00000576241 CST9Q5W186 159 aa17.78■□□□□ 0.44
CCDC40-216ENST00000576241 SH3TC1Q8TE82 1336 aa17.77■□□□□ 0.44
CCDC40-216ENST00000576241 DUSP27Q5VZP5 1158 aa17.77■□□□□ 0.44
CCDC40-216ENST00000576241 GPC2Q8N158 579 aa17.77■□□□□ 0.44
CCDC40-216ENST00000576241 LARGE2Q8N3Y3 721 aa17.77■□□□□ 0.44
CCDC40-216ENST00000576241 PLBD2Q8NHP8 589 aa17.77■□□□□ 0.44
CCDC40-216ENST00000576241 MBIPQ9NS73 344 aa17.77■□□□□ 0.44
CCDC40-216ENST00000576241 HYPKQ9NX55 129 aa17.77■□□□□ 0.44
CCDC40-216ENST00000576241 TLL2Q9Y6L7 1015 aa17.77■□□□□ 0.44
CCDC40-216ENST00000576241 HCLS1P14317 486 aaPredicted RBP17.76■□□□□ 0.43
CCDC40-216ENST00000576241 EIF6P56537 245 aaKnown RBP17.76■□□□□ 0.43
CCDC40-216ENST00000576241 GNAI1P63096 354 aa17.76■□□□□ 0.43
CCDC40-216ENST00000576241 ANKRD13DQ6ZTN6 518 aa17.76■□□□□ 0.43
CCDC40-216ENST00000576241 IFT57Q9NWB7 429 aa17.76■□□□□ 0.43
CCDC40-216ENST00000576241 ABCC4O15439 1325 aa17.75■□□□□ 0.43
CCDC40-216ENST00000576241 TRAF5O00463 557 aa17.75■□□□□ 0.43
CCDC40-216ENST00000576241 ATP6V0A2Q9Y487 856 aa17.75■□□□□ 0.43
CCDC40-216ENST00000576241 ANKRD36CQ5JPF3 1778 aa17.74■□□□□ 0.43
CCDC40-216ENST00000576241 BBOX1O75936 387 aa17.74■□□□□ 0.43
CCDC40-216ENST00000576241 DDX46Q7L014 1031 aaKnown RBP17.74■□□□□ 0.43
CCDC40-216ENST00000576241 GJA3Q9Y6H8 435 aa17.74■□□□□ 0.43
CCDC40-216ENST00000576241 PPIP5K2O43314 1243 aa17.73■□□□□ 0.43
CCDC40-216ENST00000576241 ZNF853P0CG23 659 aa17.73■□□□□ 0.43
CCDC40-216ENST00000576241 NIM1KQ8IY84 436 aa17.73■□□□□ 0.43
CCDC40-216ENST00000576241 SUPT20HQ8NEM7 779 aa17.73■□□□□ 0.43
CCDC40-216ENST00000576241 LMOD1P29536 600 aaPredicted RBP17.72■□□□□ 0.43
CCDC40-216ENST00000576241 ZEB1P37275 1124 aaPredicted RBP17.72■□□□□ 0.43
CCDC40-216ENST00000576241 BRPF1P55201 1214 aaPredicted RBP17.72■□□□□ 0.43
CCDC40-216ENST00000576241 GOLGA2Q08379 1002 aa17.72■□□□□ 0.43
CCDC40-216ENST00000576241 DPP8Q6V1X1 898 aaPredicted RBP17.72■□□□□ 0.43
CCDC40-216ENST00000576241 SLC51AQ86UW1 340 aa17.72■□□□□ 0.43
CCDC40-216ENST00000576241 VPS33BQ9H267 617 aa17.72■□□□□ 0.43
CCDC40-216ENST00000576241 ATP5J2-PTCD1G3V325 749 aa17.71■□□□□ 0.43
CCDC40-216ENST00000576241 GRAPQ13588 217 aa17.71■□□□□ 0.43
CCDC40-216ENST00000576241 AOC3Q16853 763 aa17.71■□□□□ 0.43
CCDC40-216ENST00000576241 SP8Q8IXZ3 490 aa17.71■□□□□ 0.43
CCDC40-216ENST00000576241 GRAPLQ8TC17 118 aaPredicted RBP17.71■□□□□ 0.43
CCDC40-216ENST00000576241 ZNF428Q96B54 188 aa17.71■□□□□ 0.43
CCDC40-216ENST00000576241 ISCA1Q9BUE6 129 aa17.71■□□□□ 0.43
CCDC40-216ENST00000576241 CHMP4AQ9BY43 222 aa17.71■□□□□ 0.43
CCDC40-216ENST00000576241 COL4A5P29400 1685 aa17.71■□□□□ 0.42
CCDC40-216ENST00000576241 ELL2O00472 640 aaPredicted RBP17.7■□□□□ 0.42
CCDC40-216ENST00000576241 CIAPIN1Q6FI81 312 aa17.7■□□□□ 0.42
CCDC40-216ENST00000576241 TMC4Q7Z404 712 aa17.7■□□□□ 0.42
CCDC40-216ENST00000576241 RIC3Q7Z5B4 369 aa17.7■□□□□ 0.42
CCDC40-216ENST00000576241 SAPCD2Q86UD0 394 aa17.7■□□□□ 0.42
CCDC40-216ENST00000576241 MPNDQ8N594 471 aa17.7■□□□□ 0.42
CCDC40-216ENST00000576241 FAM89AQ96GI7 184 aa17.7■□□□□ 0.42
CCDC40-216ENST00000576241 EPS15P42566 896 aa17.69■□□□□ 0.42
CCDC40-216ENST00000576241 RTFDC1Q9BY42 306 aaPredicted RBP17.69■□□□□ 0.42
CCDC40-216ENST00000576241 TRIM28Q13263 835 aaKnown RBP17.68■□□□□ 0.42
CCDC40-216ENST00000576241 SCNN1DP51172 638 aa17.67■□□□□ 0.42
CCDC40-216ENST00000576241 RTL5Q5HYW3 569 aaPredicted RBP17.67■□□□□ 0.42
CCDC40-216ENST00000576241 CCDC30Q5VVM6 783 aa17.67■□□□□ 0.42
CCDC40-216ENST00000576241 C8orf58Q8NAV2 365 aa17.67■□□□□ 0.42
CCDC40-216ENST00000576241 PHAXQ9H814 394 aaKnown RBP17.67■□□□□ 0.42
CCDC40-216ENST00000576241 ZNRF3Q9ULT6 936 aa17.67■□□□□ 0.42
CCDC40-216ENST00000576241 IRS4O14654 1257 aaPredicted RBP17.66■□□□□ 0.42
CCDC40-216ENST00000576241 CELF2O95319 508 aaKnown RBP17.66■□□□□ 0.42
CCDC40-216ENST00000576241 DDX58O95786 925 aaKnown RBP17.66■□□□□ 0.42
CCDC40-216ENST00000576241 HSP90B1P14625 803 aaKnown RBP17.66■□□□□ 0.42
CCDC40-216ENST00000576241 SF3B3Q15393 1217 aaKnown RBP17.66■□□□□ 0.42
CCDC40-216ENST00000576241 HHIPL1Q96JK4 782 aa17.66■□□□□ 0.42
CCDC40-216ENST00000576241 LAMB2P55268 1798 aa17.66■□□□□ 0.42
CCDC40-216ENST00000576241 KIAA2012Q0VF49 1180 aa17.65■□□□□ 0.42
CCDC40-216ENST00000576241 CCDC184Q52MB2 194 aa17.65■□□□□ 0.42
CCDC40-216ENST00000576241 USP50Q70EL3 339 aaPredicted RBP17.65■□□□□ 0.42
CCDC40-216ENST00000576241 ZIC5Q96T25 663 aa17.65■□□□□ 0.42
CCDC40-216ENST00000576241 ZBTB38Q8NAP3 1195 aaPredicted RBP17.64■□□□□ 0.41
CCDC40-216ENST00000576241 MYD88Q99836 296 aa17.64■□□□□ 0.41
CCDC40-216ENST00000576241 CXCL9Q07325 125 aa17.63■□□□□ 0.41
CCDC40-216ENST00000576241 CCDC27Q2M243 656 aa17.63■□□□□ 0.41
CCDC40-216ENST00000576241 CCDC191Q8NCU4 936 aa17.63■□□□□ 0.41
CCDC40-216ENST00000576241 CELF1Q92879 486 aaKnown RBP17.63■□□□□ 0.41
CCDC40-216ENST00000576241 TSR2Q969E8 191 aaKnown RBP17.63■□□□□ 0.41
CCDC40-216ENST00000576241 MRS2Q9HD23 443 aa17.63■□□□□ 0.41
CCDC40-216ENST00000576241 GPRC5DQ9NZD1 345 aa17.63■□□□□ 0.41
CCDC40-216ENST00000576241 DDX60Q8IY21 1712 aaKnown RBP17.62■□□□□ 0.41
CCDC40-216ENST00000576241 ANP32CO43423 234 aa17.62■□□□□ 0.41
CCDC40-216ENST00000576241 TNIP1Q15025 636 aa17.62■□□□□ 0.41
CCDC40-216ENST00000576241 WWC1Q8IX03 1113 aa17.62■□□□□ 0.41
CCDC40-216ENST00000576241 STK31Q9BXU1 1019 aa17.62■□□□□ 0.41
CCDC40-216ENST00000576241 ADARB2Q9NS39 739 aaKnown RBP17.62■□□□□ 0.41
CCDC40-216ENST00000576241 CWC25Q9NXE8 425 aaPredicted RBP17.62■□□□□ 0.41
CCDC40-216ENST00000576241 NSFL1CQ9UNZ2 370 aaKnown RBP17.62■□□□□ 0.41
CCDC40-216ENST00000576241 RAD17O75943 681 aa17.61■□□□□ 0.41
CCDC40-216ENST00000576241 GMPSP49915 693 aaPredicted RBP17.61■□□□□ 0.41
CCDC40-216ENST00000576241 NOGQ13253 232 aa17.61■□□□□ 0.41
CCDC40-216ENST00000576241 TSPYL6Q8N831 410 aa17.61■□□□□ 0.41
CCDC40-216ENST00000576241 METTL22Q9BUU2 404 aaPredicted RBP17.61■□□□□ 0.41
CCDC40-216ENST00000576241 GLIS2Q9BZE0 524 aaPredicted RBP17.61■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms