RNA–Protein interactions for RNA: ENST00000575599.5

RPAIN-216, Transcript of RPA interacting protein, humanhuman

TSL 2

Gene RPAIN, Length 1,359 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-216ENST00000575599 PRELPP51888 382 aa16.91■□□□□ 0.3
RPAIN-216ENST00000575599 CWF19L2Q2TBE0 894 aaKnown RBP16.91■□□□□ 0.3
RPAIN-216ENST00000575599 DNAAF4Q8WXU2 420 aa16.91■□□□□ 0.3
RPAIN-216ENST00000575599 CRAMP1Q96RY5 1269 aa16.91■□□□□ 0.3
RPAIN-216ENST00000575599 ABCC4O15439 1325 aa16.91■□□□□ 0.3
RPAIN-216ENST00000575599 TIAM2Q8IVF5 1701 aa16.91■□□□□ 0.3
RPAIN-216ENST00000575599 HNRNPUQ00839 825 aaKnown RBP eCLIP16.9■□□□□ 0.3
RPAIN-216ENST00000575599 GPBP1L1Q9HC44 474 aaPredicted RBP16.9■□□□□ 0.3
RPAIN-216ENST00000575599 NEURL1BA8MQ27 555 aa16.89■□□□□ 0.3
RPAIN-216ENST00000575599 F6X3S4 739 aa16.89■□□□□ 0.3
RPAIN-216ENST00000575599 PCCAP05165 728 aaPredicted RBP16.89■□□□□ 0.3
RPAIN-216ENST00000575599 DDX46Q7L014 1031 aaKnown RBP16.89■□□□□ 0.3
RPAIN-216ENST00000575599 SLC51AQ86UW1 340 aa16.89■□□□□ 0.3
RPAIN-216ENST00000575599 LTBP3Q9NS15 1303 aa16.89■□□□□ 0.29
RPAIN-216ENST00000575599 RTKN2Q8IZC4 609 aa16.89■□□□□ 0.29
RPAIN-216ENST00000575599 TAF1P21675 1872 aa16.88■□□□□ 0.29
RPAIN-216ENST00000575599 HSP90B1P14625 803 aaKnown RBP16.88■□□□□ 0.29
RPAIN-216ENST00000575599 TRMT2AQ8IZ69 625 aaKnown RBP16.88■□□□□ 0.29
RPAIN-216ENST00000575599 BCL2L13Q9BXK5 485 aa16.88■□□□□ 0.29
RPAIN-216ENST00000575599 FKBP4Q02790 459 aaKnown RBP eCLIP16.87■□□□□ 0.29
RPAIN-216ENST00000575599 GRAPQ13588 217 aa16.87■□□□□ 0.29
RPAIN-216ENST00000575599 SF3B3Q15393 1217 aaKnown RBP16.87■□□□□ 0.29
RPAIN-216ENST00000575599 LHX8Q68G74 356 aa16.87■□□□□ 0.29
RPAIN-216ENST00000575599 MRPL50Q8N5N7 158 aaKnown RBP16.87■□□□□ 0.29
RPAIN-216ENST00000575599 GRAPLQ8TC17 118 aaPredicted RBP16.87■□□□□ 0.29
RPAIN-216ENST00000575599 TMX4Q9H1E5 349 aaPredicted RBP16.87■□□□□ 0.29
RPAIN-216ENST00000575599 ZNF277Q9NRM2 450 aaPredicted RBP16.87■□□□□ 0.29
RPAIN-216ENST00000575599 PDE8AO60658 829 aa16.86■□□□□ 0.29
RPAIN-216ENST00000575599 CC2D2BQ6DHV5 1058 aa16.86■□□□□ 0.29
RPAIN-216ENST00000575599 UBE3BQ7Z3V4 1068 aa16.86■□□□□ 0.29
RPAIN-216ENST00000575599 LINS1Q8NG48 757 aa16.86■□□□□ 0.29
RPAIN-216ENST00000575599 SSH1Q8WYL5 1049 aa16.86■□□□□ 0.29
RPAIN-216ENST00000575599 CCDC85AQ96PX6 553 aaPredicted RBP16.86■□□□□ 0.29
RPAIN-216ENST00000575599 ATP6V0A2Q9Y487 856 aa16.86■□□□□ 0.29
RPAIN-216ENST00000575599 CDHR2Q9BYE9 1310 aa16.86■□□□□ 0.29
RPAIN-216ENST00000575599 DICER1Q9UPY3 1922 aaKnown RBP16.85■□□□□ 0.29
RPAIN-216ENST00000575599 SNED1Q8TER0 1413 aa16.85■□□□□ 0.29
RPAIN-216ENST00000575599 BBOX1O75936 387 aa16.85■□□□□ 0.29
RPAIN-216ENST00000575599 GCKRQ14397 625 aa16.85■□□□□ 0.29
RPAIN-216ENST00000575599 SLC4A10Q6U841 1118 aa16.85■□□□□ 0.29
RPAIN-216ENST00000575599 CELF1Q92879 486 aaKnown RBP16.85■□□□□ 0.29
RPAIN-216ENST00000575599 COL4A1P02462 1669 aa16.85■□□□□ 0.29
RPAIN-216ENST00000575599 ZC3H4Q9UPT8 1303 aaKnown RBP16.85■□□□□ 0.29
RPAIN-216ENST00000575599 CCDC152Q4G0S7 254 aa16.84■□□□□ 0.29
RPAIN-216ENST00000575599 SMC4Q9NTJ3 1288 aa16.84■□□□□ 0.29
RPAIN-216ENST00000575599 FOXD4L1Q9NU39 408 aa16.84■□□□□ 0.29
RPAIN-216ENST00000575599 CTSWP56202 376 aa16.83■□□□□ 0.28
RPAIN-216ENST00000575599 BEND3Q5T5X7 828 aa16.83■□□□□ 0.28
RPAIN-216ENST00000575599 PSMD1Q99460 953 aa16.83■□□□□ 0.28
RPAIN-216ENST00000575599 SEC31BQ9NQW1 1179 aa16.83■□□□□ 0.28
RPAIN-216ENST00000575599 KDM2BQ8NHM5 1336 aa16.83■□□□□ 0.28
RPAIN-216ENST00000575599 MYH3P11055 1940 aa16.82■□□□□ 0.28
RPAIN-216ENST00000575599 H7C1W4 665 aa16.82■□□□□ 0.28
RPAIN-216ENST00000575599 CT47B1P0C2W7 299 aaPredicted RBP16.82■□□□□ 0.28
RPAIN-216ENST00000575599 IARSP41252 1262 aaKnown RBP16.82■□□□□ 0.28
RPAIN-216ENST00000575599 ALDH1L2Q3SY69 923 aa16.82■□□□□ 0.28
RPAIN-216ENST00000575599 GRIPAP1Q4V328 841 aa16.82■□□□□ 0.28
RPAIN-216ENST00000575599 SP8Q8IXZ3 490 aa16.82■□□□□ 0.28
RPAIN-216ENST00000575599 NMRK2Q9NPI5 230 aa16.82■□□□□ 0.28
RPAIN-216ENST00000575599 LRRC37AA6NMS7 1700 aa16.81■□□□□ 0.28
RPAIN-216ENST00000575599 TMC4Q7Z404 712 aa16.81■□□□□ 0.28
RPAIN-216ENST00000575599 PTPRCP08575 1304 aa16.81■□□□□ 0.28
RPAIN-216ENST00000575599 DPP8Q6V1X1 898 aaPredicted RBP16.8■□□□□ 0.28
RPAIN-216ENST00000575599 SRCIN1Q9C0H9 1055 aa16.8■□□□□ 0.28
RPAIN-216ENST00000575599 GLTPD2A6NH11 291 aa16.79■□□□□ 0.28
RPAIN-216ENST00000575599 CASP7P55210 303 aa16.79■□□□□ 0.28
RPAIN-216ENST00000575599 RPS8P62241 208 aaKnown RBP16.79■□□□□ 0.28
RPAIN-216ENST00000575599 DPY19L2Q6NUT2 758 aa16.79■□□□□ 0.28
RPAIN-216ENST00000575599 MPNDQ8N594 471 aa16.79■□□□□ 0.28
RPAIN-216ENST00000575599 TTLL11Q8NHH1 800 aa16.79■□□□□ 0.28
RPAIN-216ENST00000575599 GREM2Q9H772 168 aa16.79■□□□□ 0.28
RPAIN-216ENST00000575599 ZBED9Q6R2W3 1325 aa16.78■□□□□ 0.28
RPAIN-216ENST00000575599 KIF3CO14782 793 aa16.78■□□□□ 0.28
RPAIN-216ENST00000575599 PPIP5K2O43314 1243 aa16.78■□□□□ 0.28
RPAIN-216ENST00000575599 LARGE2Q8N3Y3 721 aa16.78■□□□□ 0.28
RPAIN-216ENST00000575599 RRAGCQ9HB90 399 aa16.78■□□□□ 0.28
RPAIN-216ENST00000575599 C9orf78Q9NZ63 289 aaPredicted RBP16.78■□□□□ 0.28
RPAIN-216ENST00000575599 SPEF2Q9C093 1822 aa16.78■□□□□ 0.28
RPAIN-216ENST00000575599 COL4A5P29400 1685 aa16.78■□□□□ 0.28
RPAIN-216ENST00000575599 GRM8O00222 908 aa16.77■□□□□ 0.28
RPAIN-216ENST00000575599 ALDH1L1O75891 902 aa16.77■□□□□ 0.28
RPAIN-216ENST00000575599 AOC3Q16853 763 aa16.77■□□□□ 0.28
RPAIN-216ENST00000575599 ANKRD18AQ8IVF6 992 aa16.77■□□□□ 0.28
RPAIN-216ENST00000575599 SUPT20HQ8NEM7 779 aa16.77■□□□□ 0.28
RPAIN-216ENST00000575599 JDP2Q8WYK2 163 aa16.77■□□□□ 0.28
RPAIN-216ENST00000575599 CDC5LQ99459 802 aaKnown RBP16.77■□□□□ 0.28
RPAIN-216ENST00000575599 PLA2G12BQ9BX93 195 aa16.77■□□□□ 0.28
RPAIN-216ENST00000575599 NSFL1CQ9UNZ2 370 aaKnown RBP16.77■□□□□ 0.28
RPAIN-216ENST00000575599 DUOX1Q9NRD9 1551 aa16.77■□□□□ 0.28
RPAIN-216ENST00000575599 ZNF541Q9H0D2 1346 aa16.77■□□□□ 0.27
RPAIN-216ENST00000575599 RARSP54136 660 aaKnown RBP16.77■□□□□ 0.27
RPAIN-216ENST00000575599 FAM161AQ3B820 660 aa16.77■□□□□ 0.27
RPAIN-216ENST00000575599 NOB1Q9ULX3 412 aaKnown RBP16.77■□□□□ 0.27
RPAIN-216ENST00000575599 DDNO94850 711 aaPredicted RBP16.76■□□□□ 0.27
RPAIN-216ENST00000575599 C1QTNF8P60827 252 aa16.76■□□□□ 0.27
RPAIN-216ENST00000575599 GPSM2P81274 684 aa16.76■□□□□ 0.27
RPAIN-216ENST00000575599 NIM1KQ8IY84 436 aa16.76■□□□□ 0.27
RPAIN-216ENST00000575599 RTFDC1Q9BY42 306 aaPredicted RBP16.76■□□□□ 0.27
RPAIN-216ENST00000575599 CHMP3Q9Y3E7 222 aa16.76■□□□□ 0.27
RPAIN-216ENST00000575599 RTL9Q8NET4 1388 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms