RNA–Protein interactions for RNA: ENST00000575431.1

CCDC40-214, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-214ENST00000575431 CTSWP56202 376 aa12.05□□□□□ -0.48
CCDC40-214ENST00000575431 GRAPQ13588 217 aa12.05□□□□□ -0.48
CCDC40-214ENST00000575431 ARHGAP27Q6ZUM4 889 aa12.05□□□□□ -0.48
CCDC40-214ENST00000575431 C3orf67Q6ZVT6 689 aa12.05□□□□□ -0.48
CCDC40-214ENST00000575431 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.05□□□□□ -0.48
CCDC40-214ENST00000575431 GRAPLQ8TC17 118 aaPredicted RBP12.05□□□□□ -0.48
CCDC40-214ENST00000575431 WWC3Q9ULE0 1092 aa12.05□□□□□ -0.48
CCDC40-214ENST00000575431 MYH3P11055 1940 aa12.05□□□□□ -0.48
CCDC40-214ENST00000575431 RTL9Q8NET4 1388 aa12.05□□□□□ -0.48
CCDC40-214ENST00000575431 C21orf2O43822 256 aa12.04□□□□□ -0.48
CCDC40-214ENST00000575431 CSF1RP07333 972 aa12.04□□□□□ -0.48
CCDC40-214ENST00000575431 CCDC93Q567U6 631 aa12.04□□□□□ -0.48
CCDC40-214ENST00000575431 SP8Q8IXZ3 490 aa12.04□□□□□ -0.48
CCDC40-214ENST00000575431 RTKN2Q8IZC4 609 aa12.04□□□□□ -0.48
CCDC40-214ENST00000575431 TTLL11Q8NHH1 800 aa12.04□□□□□ -0.48
CCDC40-214ENST00000575431 C7orf43Q8WVR3 580 aa12.04□□□□□ -0.48
CCDC40-214ENST00000575431 JARID2Q92833 1246 aaPredicted RBP12.04□□□□□ -0.48
CCDC40-214ENST00000575431 USP44Q9H0E7 712 aa12.04□□□□□ -0.48
CCDC40-214ENST00000575431 SLX4Q8IY92 1834 aa12.04□□□□□ -0.48
CCDC40-214ENST00000575431 CACNA1SQ13698 1873 aa12.04□□□□□ -0.48
CCDC40-214ENST00000575431 PPEF1O14829 653 aaPredicted RBP12.03□□□□□ -0.48
CCDC40-214ENST00000575431 GNAI3P08754 354 aa12.03□□□□□ -0.48
CCDC40-214ENST00000575431 NBPF7P0C2Y1 421 aaPredicted RBP12.03□□□□□ -0.48
CCDC40-214ENST00000575431 RPS8P62241 208 aaKnown RBP12.03□□□□□ -0.48
CCDC40-214ENST00000575431 FTSJ3Q8IY81 847 aaKnown RBP12.03□□□□□ -0.48
CCDC40-214ENST00000575431 DZIP1LQ8IYY4 767 aaKnown RBP12.03□□□□□ -0.48
CCDC40-214ENST00000575431 CDC5LQ99459 802 aaKnown RBP12.03□□□□□ -0.48
CCDC40-214ENST00000575431 ATP6V0A2Q9Y487 856 aa12.03□□□□□ -0.48
CCDC40-214ENST00000575431 LTBP3Q9NS15 1303 aa12.03□□□□□ -0.48
CCDC40-214ENST00000575431 UBTFL1P0CB47 393 aaPredicted RBP12.02□□□□□ -0.49
CCDC40-214ENST00000575431 ANKRD18AQ8IVF6 992 aa12.02□□□□□ -0.49
CCDC40-214ENST00000575431 CHD4Q14839 1912 aa12.01□□□□□ -0.49
CCDC40-214ENST00000575431 ANKRD18BA2A2Z9 1011 aa12.01□□□□□ -0.49
CCDC40-214ENST00000575431 FOXO4P98177 505 aa12.01□□□□□ -0.49
CCDC40-214ENST00000575431 CLUAP1Q96AJ1 413 aa12.01□□□□□ -0.49
CCDC40-214ENST00000575431 TAOK3Q9H2K8 898 aa12.01□□□□□ -0.49
CCDC40-214ENST00000575431 CHMP4BQ9H444 224 aaKnown RBP12.01□□□□□ -0.49
CCDC40-214ENST00000575431 FER1L6Q2WGJ9 1857 aa12□□□□□ -0.49
CCDC40-214ENST00000575431 IGHMBP2P38935 993 aaKnown RBP12□□□□□ -0.49
CCDC40-214ENST00000575431 FKBP4Q02790 459 aaKnown RBP eCLIP12□□□□□ -0.49
CCDC40-214ENST00000575431 IFIT5Q13325 482 aaKnown RBP12□□□□□ -0.49
CCDC40-214ENST00000575431 CCDC57Q2TAC2 916 aa12□□□□□ -0.49
CCDC40-214ENST00000575431 RABL6Q3YEC7 729 aaPredicted RBP12□□□□□ -0.49
CCDC40-214ENST00000575431 LMBR1LQ6UX01 489 aa12□□□□□ -0.49
CCDC40-214ENST00000575431 SUPT20HQ8NEM7 779 aa12□□□□□ -0.49
CCDC40-214ENST00000575431 CELF1Q92879 486 aaKnown RBP12□□□□□ -0.49
CCDC40-214ENST00000575431 PSMD1Q99460 953 aa12□□□□□ -0.49
CCDC40-214ENST00000575431 VPS33BQ9H267 617 aa12□□□□□ -0.49
CCDC40-214ENST00000575431 GREM2Q9H772 168 aa12□□□□□ -0.49
CCDC40-214ENST00000575431 ZNF219Q9P2Y4 722 aaPredicted RBP12□□□□□ -0.49
CCDC40-214ENST00000575431 LMNB1P20700 586 aa11.99□□□□□ -0.49
CCDC40-214ENST00000575431 ITGA6P23229 1130 aa11.99□□□□□ -0.49
CCDC40-214ENST00000575431 PDE3AQ14432 1141 aa11.99□□□□□ -0.49
CCDC40-214ENST00000575431 MPNDQ8N594 471 aa11.99□□□□□ -0.49
CCDC40-214ENST00000575431 TMEM57Q8N5G2 664 aa11.99□□□□□ -0.49
CCDC40-214ENST00000575431 SUCLG2Q96I99 432 aa11.99□□□□□ -0.49
CCDC40-214ENST00000575431 CCDC85AQ96PX6 553 aaPredicted RBP11.99□□□□□ -0.49
CCDC40-214ENST00000575431 MPHOSPH8Q99549 860 aa11.99□□□□□ -0.49
CCDC40-214ENST00000575431 SEC31BQ9NQW1 1179 aa11.99□□□□□ -0.49
CCDC40-214ENST00000575431 BSDC1Q9NW68 430 aaPredicted RBP11.99□□□□□ -0.49
CCDC40-214ENST00000575431 CHMP3Q9Y3E7 222 aa11.99□□□□□ -0.49
CCDC40-214ENST00000575431 LRRC37AA6NMS7 1700 aa11.98□□□□□ -0.49
CCDC40-214ENST00000575431 ZC3H4Q9UPT8 1303 aaKnown RBP11.98□□□□□ -0.49
CCDC40-214ENST00000575431 NFKBIEO00221 500 aa11.98□□□□□ -0.49
CCDC40-214ENST00000575431 FAM161AQ3B820 660 aa11.98□□□□□ -0.49
CCDC40-214ENST00000575431 EPHA10Q5JZY3 1008 aa11.98□□□□□ -0.49
CCDC40-214ENST00000575431 KAZALD1Q96I82 304 aa11.98□□□□□ -0.49
CCDC40-214ENST00000575431 SNED1Q8TER0 1413 aa11.97□□□□□ -0.49
CCDC40-214ENST00000575431 TAF7LQ5H9L4 462 aa11.97□□□□□ -0.49
CCDC40-214ENST00000575431 DPP8Q6V1X1 898 aaPredicted RBP11.97□□□□□ -0.49
CCDC40-214ENST00000575431 ITPRIPQ8IWB1 547 aa11.97□□□□□ -0.49
CCDC40-214ENST00000575431 MEIS3Q99687 375 aa11.97□□□□□ -0.49
CCDC40-214ENST00000575431 RTFDC1Q9BY42 306 aaPredicted RBP11.97□□□□□ -0.49
CCDC40-214ENST00000575431 ANKRD2Q9GZV1 360 aa11.97□□□□□ -0.49
CCDC40-214ENST00000575431 BICC1Q9H694 974 aaKnown RBP11.97□□□□□ -0.49
CCDC40-214ENST00000575431 DDX19BQ9UMR2 479 aa11.97□□□□□ -0.49
CCDC40-214ENST00000575431 NSFL1CQ9UNZ2 370 aaKnown RBP11.97□□□□□ -0.49
CCDC40-214ENST00000575431 TAF1P21675 1872 aa11.97□□□□□ -0.49
CCDC40-214ENST00000575431 SBF1O95248 1867 aa11.96□□□□□ -0.49
CCDC40-214ENST00000575431 ZBTB7BO15156 539 aaPredicted RBP11.96□□□□□ -0.49
CCDC40-214ENST00000575431 GNAI2P04899 355 aa11.96□□□□□ -0.49
CCDC40-214ENST00000575431 C9orf131Q5VYM1 1079 aa11.96□□□□□ -0.49
CCDC40-214ENST00000575431 ANKRD44Q8N8A2 993 aa11.96□□□□□ -0.49
CCDC40-214ENST00000575431 PODXL2Q9NZ53 605 aa11.96□□□□□ -0.49
CCDC40-214ENST00000575431 TNNQ9UQP3 1299 aa11.96□□□□□ -0.49
CCDC40-214ENST00000575431 XDHP47989 1333 aa11.95□□□□□ -0.5
CCDC40-214ENST00000575431 RLBP1P12271 317 aa11.95□□□□□ -0.5
CCDC40-214ENST00000575431 YY1P25490 414 aa11.95□□□□□ -0.5
CCDC40-214ENST00000575431 IARSP41252 1262 aaKnown RBP11.95□□□□□ -0.5
CCDC40-214ENST00000575431 MTX1Q13505 466 aa11.95□□□□□ -0.5
CCDC40-214ENST00000575431 MVPQ14764 893 aaKnown RBP11.95□□□□□ -0.5
CCDC40-214ENST00000575431 OLFM4Q6UX06 510 aa11.95□□□□□ -0.5
CCDC40-214ENST00000575431 LDHAL6AQ6ZMR3 332 aa11.95□□□□□ -0.5
CCDC40-214ENST00000575431 PANK1Q8TE04 598 aa11.95□□□□□ -0.5
CCDC40-214ENST00000575431 JDP2Q8WYK2 163 aa11.95□□□□□ -0.5
CCDC40-214ENST00000575431 EYA3Q99504 573 aa11.95□□□□□ -0.5
CCDC40-214ENST00000575431 RNF181Q9P0P0 153 aa11.95□□□□□ -0.5
CCDC40-214ENST00000575431 ANKIB1Q9P2G1 1089 aa11.95□□□□□ -0.5
CCDC40-214ENST00000575431 FBXO3Q9UK99 471 aa11.95□□□□□ -0.5
CCDC40-214ENST00000575431 MINPP1Q9UNW1 487 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms