RNA–Protein interactions for RNA: ENST00000574933.1

CCDC40-213, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 326 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-213ENST00000574933 H0YIN7 160 aa22.85■■□□□ 1.25
CCDC40-213ENST00000574933 KCNA3P22001 575 aa22.85■■□□□ 1.25
CCDC40-213ENST00000574933 CTSWP56202 376 aa22.85■■□□□ 1.25
CCDC40-213ENST00000574933 RABL6Q3YEC7 729 aaPredicted RBP22.85■■□□□ 1.25
CCDC40-213ENST00000574933 C2CD5Q86YS7 1000 aa22.85■■□□□ 1.25
CCDC40-213ENST00000574933 TTLL11Q8NHH1 800 aa22.85■■□□□ 1.25
CCDC40-213ENST00000574933 CHMP4BQ9H444 224 aaKnown RBP22.85■■□□□ 1.25
CCDC40-213ENST00000574933 NPR1P16066 1061 aa22.84■■□□□ 1.25
CCDC40-213ENST00000574933 DPEP1P16444 411 aa22.84■■□□□ 1.25
CCDC40-213ENST00000574933 EPHA10Q5JZY3 1008 aa22.84■■□□□ 1.25
CCDC40-213ENST00000574933 STYK1Q6J9G0 422 aa22.84■■□□□ 1.25
CCDC40-213ENST00000574933 MASTLQ96GX5 879 aa22.84■■□□□ 1.25
CCDC40-213ENST00000574933 CHRNA5P30532 468 aa22.83■■□□□ 1.25
CCDC40-213ENST00000574933 NLGN2Q8NFZ4 835 aa22.83■■□□□ 1.25
CCDC40-213ENST00000574933 CRAMP1Q96RY5 1269 aa22.83■■□□□ 1.25
CCDC40-213ENST00000574933 A0A0G2JLW4 131 aa22.82■■□□□ 1.24
CCDC40-213ENST00000574933 CCDC152Q4G0S7 254 aa22.82■■□□□ 1.24
CCDC40-213ENST00000574933 KLHL34Q8N239 644 aa22.82■■□□□ 1.24
CCDC40-213ENST00000574933 ANKRD44Q8N8A2 993 aa22.82■■□□□ 1.24
CCDC40-213ENST00000574933 SPEF2Q9C093 1822 aa22.82■■□□□ 1.24
CCDC40-213ENST00000574933 GNAI2P04899 355 aa22.81■■□□□ 1.24
CCDC40-213ENST00000574933 BICC1Q9H694 974 aaKnown RBP22.81■■□□□ 1.24
CCDC40-213ENST00000574933 ZBTB40Q9NUA8 1239 aa22.81■■□□□ 1.24
CCDC40-213ENST00000574933 LRRFIP2Q9Y608 721 aaKnown RBP22.81■■□□□ 1.24
CCDC40-213ENST00000574933 RPGRQ92834 1020 aaKnown RBP22.8■■□□□ 1.24
CCDC40-213ENST00000574933 CNKSR1Q969H4 720 aa22.8■■□□□ 1.24
CCDC40-213ENST00000574933 RBM17Q96I25 401 aaKnown RBP22.8■■□□□ 1.24
CCDC40-213ENST00000574933 COL4A1P02462 1669 aa22.79■■□□□ 1.24
CCDC40-213ENST00000574933 ALDH1B1P30837 517 aa22.79■■□□□ 1.24
CCDC40-213ENST00000574933 MTX1Q13505 466 aa22.79■■□□□ 1.24
CCDC40-213ENST00000574933 LMBR1LQ6UX01 489 aa22.79■■□□□ 1.24
CCDC40-213ENST00000574933 PIM2Q9P1W9 311 aa22.79■■□□□ 1.24
CCDC40-213ENST00000574933 SRCAPQ6ZRS2 3230 aa22.78■■□□□ 1.24
CCDC40-213ENST00000574933 LRRC37AA6NMS7 1700 aa22.78■■□□□ 1.24
CCDC40-213ENST00000574933 DDX46Q7L014 1031 aaKnown RBP22.78■■□□□ 1.24
CCDC40-213ENST00000574933 GREM2Q9H772 168 aa22.78■■□□□ 1.24
CCDC40-213ENST00000574933 TTLL6Q8N841 843 aa22.77■■□□□ 1.24
CCDC40-213ENST00000574933 ZNF622Q969S3 477 aaKnown RBP eCLIP22.77■■□□□ 1.24
CCDC40-213ENST00000574933 CRBNQ96SW2 442 aa22.77■■□□□ 1.24
CCDC40-213ENST00000574933 GRAPQ13588 217 aa22.76■■□□□ 1.23
CCDC40-213ENST00000574933 AAMPQ13685 434 aa22.76■■□□□ 1.23
CCDC40-213ENST00000574933 FAM161AQ3B820 660 aa22.76■■□□□ 1.23
CCDC40-213ENST00000574933 GRAPLQ8TC17 118 aaPredicted RBP22.76■■□□□ 1.23
CCDC40-213ENST00000574933 ITGA6P23229 1130 aa22.75■■□□□ 1.23
CCDC40-213ENST00000574933 SEC31BQ9NQW1 1179 aa22.75■■□□□ 1.23
CCDC40-213ENST00000574933 A0A1B0GUL6 1792 aa22.75■■□□□ 1.23
CCDC40-213ENST00000574933 FER1L6Q2WGJ9 1857 aa22.75■■□□□ 1.23
CCDC40-213ENST00000574933 BBOX1O75936 387 aa22.74■■□□□ 1.23
CCDC40-213ENST00000574933 TMC4Q7Z404 712 aa22.74■■□□□ 1.23
CCDC40-213ENST00000574933 CDC5LQ99459 802 aaKnown RBP22.74■■□□□ 1.23
CCDC40-213ENST00000574933 ANKRD18BA2A2Z9 1011 aa22.73■■□□□ 1.23
CCDC40-213ENST00000574933 RPS8P62241 208 aaKnown RBP22.73■■□□□ 1.23
CCDC40-213ENST00000574933 IFIT5Q13325 482 aaKnown RBP22.73■■□□□ 1.23
CCDC40-213ENST00000574933 PRPF40BQ6NWY9 871 aaKnown RBP22.73■■□□□ 1.23
CCDC40-213ENST00000574933 C7orf43Q8WVR3 580 aa22.73■■□□□ 1.23
CCDC40-213ENST00000574933 CELF1Q92879 486 aaKnown RBP22.73■■□□□ 1.23
CCDC40-213ENST00000574933 CCDC85AQ96PX6 553 aaPredicted RBP22.73■■□□□ 1.23
CCDC40-213ENST00000574933 RFX5P48382 616 aaPredicted RBP22.72■■□□□ 1.23
CCDC40-213ENST00000574933 ATP8B2P98198 1209 aa22.72■■□□□ 1.23
CCDC40-213ENST00000574933 CCDC57Q2TAC2 916 aa22.72■■□□□ 1.23
CCDC40-213ENST00000574933 DALRD3Q5D0E6 543 aaKnown RBP22.72■■□□□ 1.23
CCDC40-213ENST00000574933 C1orf115Q9H7X2 142 aa22.72■■□□□ 1.23
CCDC40-213ENST00000574933 CEP85Q6P2H3 762 aa22.71■■□□□ 1.23
CCDC40-213ENST00000574933 RPAP2Q8IXW5 612 aaPredicted RBP22.71■■□□□ 1.23
CCDC40-213ENST00000574933 CHMP3Q9Y3E7 222 aa22.71■■□□□ 1.23
CCDC40-213ENST00000574933 LTBP1Q14766 1721 aa22.71■■□□□ 1.23
CCDC40-213ENST00000574933 POLA2Q14181 598 aa22.7■■□□□ 1.22
CCDC40-213ENST00000574933 ANKRD18AQ8IVF6 992 aa22.7■■□□□ 1.22
CCDC40-213ENST00000574933 SSH3Q8TE77 659 aa22.7■■□□□ 1.22
CCDC40-213ENST00000574933 SNED1Q8TER0 1413 aa22.69■■□□□ 1.22
CCDC40-213ENST00000574933 SP8Q8IXZ3 490 aa22.69■■□□□ 1.22
CCDC40-213ENST00000574933 EXOC6Q8TAG9 804 aa22.69■■□□□ 1.22
CCDC40-213ENST00000574933 BSDC1Q9NW68 430 aaPredicted RBP22.69■■□□□ 1.22
CCDC40-213ENST00000574933 ATP6V0A2Q9Y487 856 aa22.69■■□□□ 1.22
CCDC40-213ENST00000574933 CCDC88AQ3V6T2 1871 aa22.68■■□□□ 1.22
CCDC40-213ENST00000574933 PNMA6EA0A0J9YXQ4 647 aa22.68■■□□□ 1.22
CCDC40-213ENST00000574933 PPEF1O14829 653 aaPredicted RBP22.68■■□□□ 1.22
CCDC40-213ENST00000574933 SRGAP3O43295 1099 aa22.68■■□□□ 1.22
CCDC40-213ENST00000574933 PTPN12Q05209 780 aaKnown RBP22.68■■□□□ 1.22
CCDC40-213ENST00000574933 CC2D2BQ6DHV5 1058 aa22.68■■□□□ 1.22
CCDC40-213ENST00000574933 COPRSQ9NQ92 184 aa22.68■■□□□ 1.22
CCDC40-213ENST00000574933 FBXO3Q9UK99 471 aa22.68■■□□□ 1.22
CCDC40-213ENST00000574933 SBF1O95248 1867 aa22.68■■□□□ 1.22
CCDC40-213ENST00000574933 IGHMBP2P38935 993 aaKnown RBP22.67■■□□□ 1.22
CCDC40-213ENST00000574933 BCS1LQ9Y276 419 aa22.67■■□□□ 1.22
CCDC40-213ENST00000574933 GRIPAP1Q4V328 841 aa22.66■■□□□ 1.22
CCDC40-213ENST00000574933 SOGA3Q5TF21 947 aa22.66■■□□□ 1.22
CCDC40-213ENST00000574933 SIRT2Q8IXJ6 389 aa22.65■■□□□ 1.22
CCDC40-213ENST00000574933 ZNF594Q96JF6 807 aaPredicted RBP22.65■■□□□ 1.22
CCDC40-213ENST00000574933 MPHOSPH8Q99549 860 aa22.65■■□□□ 1.22
CCDC40-213ENST00000574933 DICER1Q9UPY3 1922 aaKnown RBP22.65■■□□□ 1.22
CCDC40-213ENST00000574933 YBX3P16989 372 aaKnown RBP eCLIP22.64■■□□□ 1.21
CCDC40-213ENST00000574933 IRX6P78412 446 aaPredicted RBP22.64■■□□□ 1.21
CCDC40-213ENST00000574933 TAF7LQ5H9L4 462 aa22.64■■□□□ 1.21
CCDC40-213ENST00000574933 C21orf2O43822 256 aa22.63■■□□□ 1.21
CCDC40-213ENST00000574933 CIAO1O76071 339 aa22.63■■□□□ 1.21
CCDC40-213ENST00000574933 LDHAL6AQ6ZMR3 332 aa22.63■■□□□ 1.21
CCDC40-213ENST00000574933 MINPP1Q9UNW1 487 aa22.63■■□□□ 1.21
CCDC40-213ENST00000574933 RIPOR2Q9Y4F9 1068 aa22.63■■□□□ 1.21
CCDC40-213ENST00000574933 PCDHB15Q9Y5E8 787 aa22.63■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms