RNA–Protein interactions for RNA: ENST00000574087.1

NUP88-208, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-208ENST00000574087 NLRP13Q86W25 1043 aa8.61□□□□□ -1.03
NUP88-208ENST00000574087 GOLGA6L1Q8N7Z2 621 aa8.61□□□□□ -1.03
NUP88-208ENST00000574087 FAM129BQ96TA1 746 aa8.61□□□□□ -1.03
NUP88-208ENST00000574087 RBCK1Q9BYM8 510 aa8.61□□□□□ -1.03
NUP88-208ENST00000574087 GGA1Q9UJY5 639 aa8.61□□□□□ -1.03
NUP88-208ENST00000574087 GDF2Q9UK05 429 aaPredicted RBP8.61□□□□□ -1.03
NUP88-208ENST00000574087 A6NHS1 94 aa8.6□□□□□ -1.03
NUP88-208ENST00000574087 MAP3K6O95382 1288 aa8.6□□□□□ -1.03
NUP88-208ENST00000574087 IGHA2P01877 340 aa8.6□□□□□ -1.03
NUP88-208ENST00000574087 LORP23490 312 aaPredicted RBP8.6□□□□□ -1.03
NUP88-208ENST00000574087 EHHADHQ08426 723 aa8.6□□□□□ -1.03
NUP88-208ENST00000574087 LYPD4Q6UWN0 246 aa8.6□□□□□ -1.03
NUP88-208ENST00000574087 FCHSD1Q86WN1 690 aa8.6□□□□□ -1.03
NUP88-208ENST00000574087 TNFRSF25Q93038 417 aa8.6□□□□□ -1.03
NUP88-208ENST00000574087 MDFIQ99750 246 aa8.6□□□□□ -1.03
NUP88-208ENST00000574087 NEURL1BA8MQ27 555 aa8.59□□□□□ -1.03
NUP88-208ENST00000574087 RARAP10276 462 aa8.59□□□□□ -1.03
NUP88-208ENST00000574087 SLCO4C1Q6ZQN7 724 aa8.59□□□□□ -1.03
NUP88-208ENST00000574087 C1orf229Q6ZS94 237 aaPredicted RBP8.59□□□□□ -1.03
NUP88-208ENST00000574087 WHAMMQ8TF30 809 aa8.59□□□□□ -1.03
NUP88-208ENST00000574087 ELP3Q9H9T3 547 aa8.59□□□□□ -1.03
NUP88-208ENST00000574087 TMEM63CQ9P1W3 806 aa8.59□□□□□ -1.03
NUP88-208ENST00000574087 ADARB2-AS1A8MUL3 147 aa8.58□□□□□ -1.04
NUP88-208ENST00000574087 MMP20O60882 483 aa8.58□□□□□ -1.04
NUP88-208ENST00000574087 CELA2BP08218 269 aaPredicted RBP8.58□□□□□ -1.04
NUP88-208ENST00000574087 MAPK1P28482 360 aa8.58□□□□□ -1.04
NUP88-208ENST00000574087 MARSP56192 900 aaKnown RBP8.58□□□□□ -1.04
NUP88-208ENST00000574087 PDE3BQ13370 1112 aa8.58□□□□□ -1.04
NUP88-208ENST00000574087 ZNF438Q7Z4V0 828 aa8.58□□□□□ -1.04
NUP88-208ENST00000574087 TTC16Q8NEE8 873 aa8.58□□□□□ -1.04
NUP88-208ENST00000574087 LRRC4BQ9NT99 713 aa8.58□□□□□ -1.04
NUP88-208ENST00000574087 TLR7Q9NYK1 1049 aaKnown RBP8.58□□□□□ -1.04
NUP88-208ENST00000574087 OIP5O43482 229 aa8.57□□□□□ -1.04
NUP88-208ENST00000574087 BCRP11274 1271 aa8.57□□□□□ -1.04
NUP88-208ENST00000574087 ZNF385CQ66K41 422 aaPredicted RBP8.57□□□□□ -1.04
NUP88-208ENST00000574087 DHX32Q7L7V1 743 aaKnown RBP8.57□□□□□ -1.04
NUP88-208ENST00000574087 TMC7Q7Z402 723 aa8.57□□□□□ -1.04
NUP88-208ENST00000574087 ABI2Q9NYB9 513 aaPredicted RBP8.57□□□□□ -1.04
NUP88-208ENST00000574087 EPXP11678 715 aa8.56□□□□□ -1.04
NUP88-208ENST00000574087 CNTN3Q9P232 1028 aa8.56□□□□□ -1.04
NUP88-208ENST00000574087 ZBTB42B2RXF5 422 aa8.55□□□□□ -1.04
NUP88-208ENST00000574087 GPR182O15218 404 aa8.55□□□□□ -1.04
NUP88-208ENST00000574087 TNFRSF21O75509 655 aa8.55□□□□□ -1.04
NUP88-208ENST00000574087 HOXD8P13378 290 aaPredicted RBP8.55□□□□□ -1.04
NUP88-208ENST00000574087 SOX18P35713 384 aa8.55□□□□□ -1.04
NUP88-208ENST00000574087 TTC39BQ5VTQ0 682 aaPredicted RBP8.55□□□□□ -1.04
NUP88-208ENST00000574087 GALNT6Q8NCL4 622 aa8.55□□□□□ -1.04
NUP88-208ENST00000574087 OR13H1Q8NG92 308 aa8.55□□□□□ -1.04
NUP88-208ENST00000574087 TRPM4Q8TD43 1214 aa8.55□□□□□ -1.04
NUP88-208ENST00000574087 EDARADDQ8WWZ3 215 aa8.55□□□□□ -1.04
NUP88-208ENST00000574087 DMRTB1Q96MA1 342 aa8.55□□□□□ -1.04
NUP88-208ENST00000574087 ASB16Q96NS5 453 aa8.55□□□□□ -1.04
NUP88-208ENST00000574087 ELOA3CA0A087WX78 387 aaPredicted RBP8.54□□□□□ -1.04
NUP88-208ENST00000574087 ELOA3DA6NLF2 546 aaPredicted RBP8.54□□□□□ -1.04
NUP88-208ENST00000574087 PSAPP07602 524 aa8.54□□□□□ -1.04
NUP88-208ENST00000574087 NRLP54845 237 aa8.54□□□□□ -1.04
NUP88-208ENST00000574087 GPLD1P80108 840 aa8.54□□□□□ -1.04
NUP88-208ENST00000574087 ELOA3BQ3SY89 546 aa8.54□□□□□ -1.04
NUP88-208ENST00000574087 C1orf127Q8N9H9 656 aa8.54□□□□□ -1.04
NUP88-208ENST00000574087 ELOA3Q8NG57 546 aa8.54□□□□□ -1.04
NUP88-208ENST00000574087 TMC1Q8TDI8 760 aa8.54□□□□□ -1.04
NUP88-208ENST00000574087 ALKBH8Q96BT7 664 aaKnown RBP8.54□□□□□ -1.04
NUP88-208ENST00000574087 UBE2OQ9C0C9 1292 aaKnown RBP8.54□□□□□ -1.04
NUP88-208ENST00000574087 CHRDQ9H2X0 955 aa8.54□□□□□ -1.04
NUP88-208ENST00000574087 DNAJB12Q9NXW2 375 aaKnown RBP8.54□□□□□ -1.04
NUP88-208ENST00000574087 SHISA8B8ZZ34 492 aa8.53□□□□□ -1.04
NUP88-208ENST00000574087 ADH7P40394 386 aa8.53□□□□□ -1.04
NUP88-208ENST00000574087 INSM1Q01101 510 aaPredicted RBP8.53□□□□□ -1.04
NUP88-208ENST00000574087 PLAURQ03405 335 aa8.53□□□□□ -1.04
NUP88-208ENST00000574087 CCDC27Q2M243 656 aa8.53□□□□□ -1.04
NUP88-208ENST00000574087 DNAJC14Q6Y2X3 702 aaPredicted RBP8.53□□□□□ -1.04
NUP88-208ENST00000574087 ZSCAN29Q8IWY8 852 aaPredicted RBP8.53□□□□□ -1.04
NUP88-208ENST00000574087 ZSCAN1Q8NBB4 408 aa8.53□□□□□ -1.04
NUP88-208ENST00000574087 SNX29Q8TEQ0 813 aa8.53□□□□□ -1.04
NUP88-208ENST00000574087 IGFLR1Q9H665 355 aa8.53□□□□□ -1.04
NUP88-208ENST00000574087 FOXD3Q9UJU5 478 aaPredicted RBP8.53□□□□□ -1.04
NUP88-208ENST00000574087 TREHO43280 583 aa8.52□□□□□ -1.05
NUP88-208ENST00000574087 ARHGEF15O94989 841 aa8.52□□□□□ -1.05
NUP88-208ENST00000574087 CYP2E1P05181 493 aaPredicted RBP8.52□□□□□ -1.05
NUP88-208ENST00000574087 DSC3Q14574 896 aa8.52□□□□□ -1.05
NUP88-208ENST00000574087 PCSK7Q16549 785 aa8.52□□□□□ -1.05
NUP88-208ENST00000574087 SVOPQ8N4V2 548 aa8.52□□□□□ -1.05
NUP88-208ENST00000574087 NIF3L1Q9GZT8 377 aa8.52□□□□□ -1.05
NUP88-208ENST00000574087 SLC6A14Q9UN76 642 aa8.52□□□□□ -1.05
NUP88-208ENST00000574087 ALAS2P22557 587 aa8.51□□□□□ -1.05
NUP88-208ENST00000574087 TMCO4Q5TGY1 634 aa8.51□□□□□ -1.05
NUP88-208ENST00000574087 BTBD6Q96KE9 485 aa8.51□□□□□ -1.05
NUP88-208ENST00000574087 PHACTR2O75167 634 aa8.5□□□□□ -1.05
NUP88-208ENST00000574087 KIF4AO95239 1232 aa8.5□□□□□ -1.05
NUP88-208ENST00000574087 NEFLP07196 543 aa8.5□□□□□ -1.05
NUP88-208ENST00000574087 MAP3K10Q02779 954 aa8.5□□□□□ -1.05
NUP88-208ENST00000574087 TBC1D8BQ0IIM8 1120 aa8.5□□□□□ -1.05
NUP88-208ENST00000574087 ORC1Q13415 861 aa8.5□□□□□ -1.05
NUP88-208ENST00000574087 COL13A1Q5TAT6 717 aaPredicted RBP8.5□□□□□ -1.05
NUP88-208ENST00000574087 PMEPA1Q969W9 287 aa8.5□□□□□ -1.05
NUP88-208ENST00000574087 ZFYVE28Q9HCC9 887 aa8.5□□□□□ -1.05
NUP88-208ENST00000574087 SALL4Q9UJQ4 1053 aa8.5□□□□□ -1.05
NUP88-208ENST00000574087 STARD13Q9Y3M8 1113 aa8.5□□□□□ -1.05
NUP88-208ENST00000574087 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP8.5□□□□□ -1.05
NUP88-208ENST00000574087 LOC102724428A0A0B4J2F2 783 aa8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms