RNA–Protein interactions for RNA: ENST00000573169.1

NUP88-206, Transcript of nucleoporin 88, humanhuman

TSL 1 (best)

Gene NUP88, Length 1,195 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-206ENST00000573169 PRELPP51888 382 aa8.31□□□□□ -1.08
NUP88-206ENST00000573169 MAP3K9P80192 1104 aa8.31□□□□□ -1.08
NUP88-206ENST00000573169 RASSF7Q02833 373 aa8.31□□□□□ -1.08
NUP88-206ENST00000573169 TBC1D9BQ66K14 1250 aa8.31□□□□□ -1.08
NUP88-206ENST00000573169 TMEM92Q6UXU6 159 aa8.31□□□□□ -1.08
NUP88-206ENST00000573169 MCM10Q7L590 875 aa8.31□□□□□ -1.08
NUP88-206ENST00000573169 C2CD5Q86YS7 1000 aa8.31□□□□□ -1.08
NUP88-206ENST00000573169 CFAP53Q96M91 514 aa8.31□□□□□ -1.08
NUP88-206ENST00000573169 TBC1D32Q96NH3 1257 aa8.31□□□□□ -1.08
NUP88-206ENST00000573169 RNF181Q9P0P0 153 aa8.31□□□□□ -1.08
NUP88-206ENST00000573169 USP16Q9Y5T5 823 aa8.31□□□□□ -1.08
NUP88-206ENST00000573169 CEMIPQ8WUJ3 1361 aa8.31□□□□□ -1.08
NUP88-206ENST00000573169 AFDNP55196 1824 aaKnown RBP8.31□□□□□ -1.08
NUP88-206ENST00000573169 SIPA1L3O60292 1781 aaPredicted RBP8.3□□□□□ -1.08
NUP88-206ENST00000573169 IGHDP01880 384 aa8.3□□□□□ -1.08
NUP88-206ENST00000573169 CLUAP1Q96AJ1 413 aa8.3□□□□□ -1.08
NUP88-206ENST00000573169 FMNL2Q96PY5 1086 aa8.3□□□□□ -1.08
NUP88-206ENST00000573169 NRXN2Q9P2S2 1712 aa8.29□□□□□ -1.08
NUP88-206ENST00000573169 ARFGEF1Q9Y6D6 1849 aa8.29□□□□□ -1.08
NUP88-206ENST00000573169 A0A087WZG4 1122 aa8.29□□□□□ -1.08
NUP88-206ENST00000573169 DPYSL4O14531 572 aa8.29□□□□□ -1.08
NUP88-206ENST00000573169 CCDC27Q2M243 656 aa8.29□□□□□ -1.08
NUP88-206ENST00000573169 TEX13AQ9BXU3 409 aaPredicted RBP8.29□□□□□ -1.08
NUP88-206ENST00000573169 EMILIN3Q9NT22 766 aa8.29□□□□□ -1.08
NUP88-206ENST00000573169 MIS18AQ9NYP9 233 aa8.29□□□□□ -1.08
NUP88-206ENST00000573169 H0YIN7 160 aa8.28□□□□□ -1.08
NUP88-206ENST00000573169 TOMM70O94826 608 aa8.28□□□□□ -1.08
NUP88-206ENST00000573169 CAMTA2O94983 1202 aa8.28□□□□□ -1.08
NUP88-206ENST00000573169 CLCN1P35523 988 aa8.28□□□□□ -1.08
NUP88-206ENST00000573169 IL6STP40189 918 aaPredicted RBP8.28□□□□□ -1.08
NUP88-206ENST00000573169 PRR5LQ6MZQ0 368 aa8.28□□□□□ -1.08
NUP88-206ENST00000573169 WDR63Q8IWG1 891 aa8.28□□□□□ -1.08
NUP88-206ENST00000573169 TTLL6Q8N841 843 aa8.28□□□□□ -1.08
NUP88-206ENST00000573169 ZNF622Q969S3 477 aaKnown RBP eCLIP8.28□□□□□ -1.08
NUP88-206ENST00000573169 RRAGCQ9HB90 399 aa8.28□□□□□ -1.08
NUP88-206ENST00000573169 NBPF26B4DH59 902 aa8.27□□□□□ -1.09
NUP88-206ENST00000573169 NFKBIEO00221 500 aa8.27□□□□□ -1.09
NUP88-206ENST00000573169 SEMA3EO15041 775 aa8.27□□□□□ -1.09
NUP88-206ENST00000573169 CT47B1P0C2W7 299 aaPredicted RBP8.27□□□□□ -1.09
NUP88-206ENST00000573169 HTRA3P83110 453 aa8.27□□□□□ -1.09
NUP88-206ENST00000573169 NBPF10Q6P3W6 841 aaKnown RBP8.27□□□□□ -1.09
NUP88-206ENST00000573169 DZIP3Q86Y13 1208 aaKnown RBP8.27□□□□□ -1.09
NUP88-206ENST00000573169 NBPF15Q8N660 670 aa8.27□□□□□ -1.09
NUP88-206ENST00000573169 SLAIN1Q8ND83 568 aa8.27□□□□□ -1.09
NUP88-206ENST00000573169 RTF1Q92541 710 aaKnown RBP8.27□□□□□ -1.09
NUP88-206ENST00000573169 ANKRD31Q8N7Z5 1873 aa8.27□□□□□ -1.09
NUP88-206ENST00000573169 SCN7AQ01118 1682 aa8.27□□□□□ -1.09
NUP88-206ENST00000573169 CEP350Q5VT06 3117 aa8.27□□□□□ -1.09
NUP88-206ENST00000573169 TESPA1A2RU30 521 aaPredicted RBP8.26□□□□□ -1.09
NUP88-206ENST00000573169 APAF1O14727 1248 aa8.26□□□□□ -1.09
NUP88-206ENST00000573169 C21orf2O43822 256 aa8.26□□□□□ -1.09
NUP88-206ENST00000573169 SNRPA1P09661 255 aaKnown RBP8.26□□□□□ -1.09
NUP88-206ENST00000573169 PDIA6Q15084 440 aa8.26□□□□□ -1.09
NUP88-206ENST00000573169 SETDB2Q96T68 719 aa8.26□□□□□ -1.09
NUP88-206ENST00000573169 THUMPD2Q9BTF0 503 aaKnown RBP8.26□□□□□ -1.09
NUP88-206ENST00000573169 BRIP1Q9BX63 1249 aa8.26□□□□□ -1.09
NUP88-206ENST00000573169 RRAGDQ9NQL2 400 aaPredicted RBP8.26□□□□□ -1.09
NUP88-206ENST00000573169 COL11A2P13942 1736 aaPredicted RBP8.26□□□□□ -1.09
NUP88-206ENST00000573169 SBF1O95248 1867 aa8.26□□□□□ -1.09
NUP88-206ENST00000573169 DLEC1Q9Y238 1755 aa8.25□□□□□ -1.09
NUP88-206ENST00000573169 FAM177BA6PVY3 158 aa8.25□□□□□ -1.09
NUP88-206ENST00000573169 RIMBP2O15034 1052 aa8.25□□□□□ -1.09
NUP88-206ENST00000573169 BCAR3O75815 825 aa8.25□□□□□ -1.09
NUP88-206ENST00000573169 SLC34A2O95436 690 aa8.25□□□□□ -1.09
NUP88-206ENST00000573169 LMNB1P20700 586 aa8.25□□□□□ -1.09
NUP88-206ENST00000573169 MCM4P33991 863 aa8.25□□□□□ -1.09
NUP88-206ENST00000573169 DDIT3P35638 169 aa8.25□□□□□ -1.09
NUP88-206ENST00000573169 RGS3P49796 1198 aa8.25□□□□□ -1.09
NUP88-206ENST00000573169 TAF7Q15545 349 aaPredicted RBP8.25□□□□□ -1.09
NUP88-206ENST00000573169 WWC1Q8IX03 1113 aa8.25□□□□□ -1.09
NUP88-206ENST00000573169 C16orf71Q8IYS4 520 aaPredicted RBP8.25□□□□□ -1.09
NUP88-206ENST00000573169 CNBD1Q8NA66 436 aa8.25□□□□□ -1.09
NUP88-206ENST00000573169 OXER1Q8TDS5 423 aa8.25□□□□□ -1.09
NUP88-206ENST00000573169 TBC1D2Q9BYX2 928 aa8.25□□□□□ -1.09
NUP88-206ENST00000573169 UPF2Q9HAU5 1272 aaKnown RBP8.25□□□□□ -1.09
NUP88-206ENST00000573169 NPHP1O15259 732 aa8.24□□□□□ -1.09
NUP88-206ENST00000573169 XRCC6P12956 609 aaKnown RBP eCLIP8.24□□□□□ -1.09
NUP88-206ENST00000573169 PDE6BP35913 854 aa8.24□□□□□ -1.09
NUP88-206ENST00000573169 MRE11P49959 708 aa8.24□□□□□ -1.09
NUP88-206ENST00000573169 APLP1P51693 650 aa8.24□□□□□ -1.09
NUP88-206ENST00000573169 RARSP54136 660 aaKnown RBP8.24□□□□□ -1.09
NUP88-206ENST00000573169 HLFQ16534 295 aa8.24□□□□□ -1.09
NUP88-206ENST00000573169 DNAJC5GQ8N7S2 189 aa8.24□□□□□ -1.09
NUP88-206ENST00000573169 RBM46Q8TBY0 533 aaKnown RBP8.24□□□□□ -1.09
NUP88-206ENST00000573169 PTCD2Q8WV60 388 aaKnown RBP8.24□□□□□ -1.09
NUP88-206ENST00000573169 PLEKHF1Q96S99 279 aa8.24□□□□□ -1.09
NUP88-206ENST00000573169 CHMP5Q9NZZ3 219 aa8.24□□□□□ -1.09
NUP88-206ENST00000573169 BCORQ6W2J9 1755 aa8.23□□□□□ -1.09
NUP88-206ENST00000573169 GOLGA6L3A6NEY3 463 aa8.23□□□□□ -1.09
NUP88-206ENST00000573169 GLTPD2A6NH11 291 aa8.23□□□□□ -1.09
NUP88-206ENST00000573169 HTATSF1O43719 755 aaKnown RBP8.23□□□□□ -1.09
NUP88-206ENST00000573169 SRGNP10124 158 aa8.23□□□□□ -1.09
NUP88-206ENST00000573169 PTMSP20962 102 aa8.23□□□□□ -1.09
NUP88-206ENST00000573169 ST5P78524 1137 aa8.23□□□□□ -1.09
NUP88-206ENST00000573169 NFE2L2Q16236 605 aa8.23□□□□□ -1.09
NUP88-206ENST00000573169 DOK7Q18PE1 504 aa8.23□□□□□ -1.09
NUP88-206ENST00000573169 OLFM4Q6UX06 510 aa8.23□□□□□ -1.09
NUP88-206ENST00000573169 NBPF5PQ86XG9 351 aaPredicted RBP8.23□□□□□ -1.09
NUP88-206ENST00000573169 RWDD1Q9H446 243 aaPredicted RBP8.23□□□□□ -1.09
NUP88-206ENST00000573169 NIP7Q9Y221 180 aaKnown RBP eCLIP8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 80.7 ms