RNA–Protein interactions for RNA: ENST00000573166.5

SMG6-213, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 1 (best)

Gene SMG6, Length 4,236 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-213ENST00000573166 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.06□□□□□ -0.48
SMG6-213ENST00000573166 CTSWP56202 376 aa12.06□□□□□ -0.48
SMG6-213ENST00000573166 EN1Q05925 392 aaPredicted RBP12.06□□□□□ -0.48
SMG6-213ENST00000573166 BMP2KLQ5H9B9 411 aa12.06□□□□□ -0.48
SMG6-213ENST00000573166 JDP2Q8WYK2 163 aa12.06□□□□□ -0.48
SMG6-213ENST00000573166 F8W031 263 aaPredicted RBP12.06□□□□□ -0.48
SMG6-213ENST00000573166 MARCH6O60337 910 aa12.06□□□□□ -0.48
SMG6-213ENST00000573166 POLR3DP05423 398 aaPredicted RBP12.06□□□□□ -0.48
SMG6-213ENST00000573166 TTC22Q5TAA0 569 aa12.06□□□□□ -0.48
SMG6-213ENST00000573166 EYA3Q99504 573 aa12.06□□□□□ -0.48
SMG6-213ENST00000573166 CYP46A1Q9Y6A2 500 aa12.06□□□□□ -0.48
SMG6-213ENST00000573166 ERVV-1B6SEH8 477 aa12.06□□□□□ -0.48
SMG6-213ENST00000573166 UFL1O94874 794 aa12.06□□□□□ -0.48
SMG6-213ENST00000573166 CYP19A1P11511 503 aaPredicted RBP12.06□□□□□ -0.48
SMG6-213ENST00000573166 SMC3Q9UQE7 1217 aa12.06□□□□□ -0.48
SMG6-213ENST00000573166 A0A1B0GUL7 405 aa12.05□□□□□ -0.48
SMG6-213ENST00000573166 TAF5LO75529 589 aa12.05□□□□□ -0.48
SMG6-213ENST00000573166 SERPINB2P05120 415 aa12.05□□□□□ -0.48
SMG6-213ENST00000573166 IMMTQ16891 758 aaKnown RBP12.05□□□□□ -0.48
SMG6-213ENST00000573166 PRKCSHP14314 528 aaPredicted RBP12.05□□□□□ -0.48
SMG6-213ENST00000573166 PDE6BP35913 854 aa12.05□□□□□ -0.48
SMG6-213ENST00000573166 BLOC1S2Q6QNY1 142 aa12.05□□□□□ -0.48
SMG6-213ENST00000573166 GZF1Q9H116 711 aaPredicted RBP12.05□□□□□ -0.48
SMG6-213ENST00000573166 RABEP1Q15276 862 aa12.05□□□□□ -0.48
SMG6-213ENST00000573166 SF3A1Q15459 793 aaKnown RBP12.04□□□□□ -0.48
SMG6-213ENST00000573166 SLC27A3Q5K4L6 730 aa12.04□□□□□ -0.48
SMG6-213ENST00000573166 JAG2Q9Y219 1238 aa12.04□□□□□ -0.48
SMG6-213ENST00000573166 IFT172Q9UG01 1749 aa12.04□□□□□ -0.48
SMG6-213ENST00000573166 BAG3O95817 575 aa12.04□□□□□ -0.48
SMG6-213ENST00000573166 BRPF1P55201 1214 aaPredicted RBP12.04□□□□□ -0.48
SMG6-213ENST00000573166 NLRP10Q86W26 655 aa12.04□□□□□ -0.48
SMG6-213ENST00000573166 JAKMIP1Q96N16 626 aaKnown RBP12.04□□□□□ -0.48
SMG6-213ENST00000573166 U3KPZ7 1027 aaPredicted RBP12.04□□□□□ -0.48
SMG6-213ENST00000573166 CRACR2BQ8N4Y2 399 aaPredicted RBP12.04□□□□□ -0.48
SMG6-213ENST00000573166 OGFOD1Q8N543 542 aa12.04□□□□□ -0.48
SMG6-213ENST00000573166 GGA1Q9UJY5 639 aa12.04□□□□□ -0.48
SMG6-213ENST00000573166 MAP2P11137 1827 aaKnown RBP12.04□□□□□ -0.48
SMG6-213ENST00000573166 SDSP20132 328 aa12.03□□□□□ -0.48
SMG6-213ENST00000573166 ALDH1B1P30837 517 aa12.03□□□□□ -0.48
SMG6-213ENST00000573166 FOSBP53539 338 aa12.03□□□□□ -0.48
SMG6-213ENST00000573166 PUM3Q15397 648 aaKnown RBP12.03□□□□□ -0.48
SMG6-213ENST00000573166 DPP8Q6V1X1 898 aaPredicted RBP12.03□□□□□ -0.48
SMG6-213ENST00000573166 VPS37CA5D8V6 355 aaPredicted RBP12.03□□□□□ -0.48
SMG6-213ENST00000573166 CYP7A1P22680 504 aa12.03□□□□□ -0.48
SMG6-213ENST00000573166 NFKBIBQ15653 356 aa12.03□□□□□ -0.48
SMG6-213ENST00000573166 HLFQ16534 295 aa12.03□□□□□ -0.48
SMG6-213ENST00000573166 SLC9C2Q5TAH2 1124 aa12.03□□□□□ -0.48
SMG6-213ENST00000573166 PRPF40BQ6NWY9 871 aaKnown RBP12.03□□□□□ -0.48
SMG6-213ENST00000573166 ZGPATQ8N5A5 531 aaKnown RBP12.03□□□□□ -0.48
SMG6-213ENST00000573166 RASSF8Q8NHQ8 419 aa12.03□□□□□ -0.48
SMG6-213ENST00000573166 DBNDD2Q9BQY9 259 aa12.03□□□□□ -0.48
SMG6-213ENST00000573166 UBAC1Q9BSL1 405 aa12.03□□□□□ -0.48
SMG6-213ENST00000573166 ATF5Q9Y2D1 282 aaPredicted RBP12.03□□□□□ -0.48
SMG6-213ENST00000573166 KRT32Q14532 448 aa12.03□□□□□ -0.48
SMG6-213ENST00000573166 KDM4AO75164 1064 aa12.03□□□□□ -0.48
SMG6-213ENST00000573166 MMP10P09238 476 aa12.03□□□□□ -0.48
SMG6-213ENST00000573166 NKX1-1Q15270 411 aaPredicted RBP12.03□□□□□ -0.48
SMG6-213ENST00000573166 TNNI3KQ59H18 835 aa12.03□□□□□ -0.48
SMG6-213ENST00000573166 MKNK2Q9HBH9 465 aa12.03□□□□□ -0.48
SMG6-213ENST00000573166 FPGT-TNNI3KV9GXZ4 949 aa12.03□□□□□ -0.48
SMG6-213ENST00000573166 CLEC4GQ6UXB4 293 aa12.02□□□□□ -0.48
SMG6-213ENST00000573166 C2CD5Q86YS7 1000 aa12.02□□□□□ -0.48
SMG6-213ENST00000573166 FNBP4Q8N3X1 1017 aaPredicted RBP12.02□□□□□ -0.48
SMG6-213ENST00000573166 PAG1Q9NWQ8 432 aa12.02□□□□□ -0.48
SMG6-213ENST00000573166 NAA16Q6N069 864 aaPredicted RBP12.02□□□□□ -0.49
SMG6-213ENST00000573166 TBC1D9Q6ZT07 1266 aa12.02□□□□□ -0.49
SMG6-213ENST00000573166 TRIM44Q96DX7 344 aaPredicted RBP12.02□□□□□ -0.49
SMG6-213ENST00000573166 NARFQ9UHQ1 456 aa12.02□□□□□ -0.49
SMG6-213ENST00000573166 RNF123Q5XPI4 1314 aa12.02□□□□□ -0.49
SMG6-213ENST00000573166 TTC41PQ6P2S7 1318 aa12.02□□□□□ -0.49
SMG6-213ENST00000573166 ZFYP08048 801 aaPredicted RBP12.02□□□□□ -0.49
SMG6-213ENST00000573166 ARHGEF1Q92888 912 aaKnown RBP12.02□□□□□ -0.49
SMG6-213ENST00000573166 GREM2Q9H772 168 aa12.02□□□□□ -0.49
SMG6-213ENST00000573166 COL5A2P05997 1499 aaPredicted RBP12.02□□□□□ -0.49
SMG6-213ENST00000573166 MEGF6O75095 1541 aa12.01□□□□□ -0.49
SMG6-213ENST00000573166 NBPF26B4DH59 902 aa12.01□□□□□ -0.49
SMG6-213ENST00000573166 HIBADHP31937 336 aaKnown RBP12.01□□□□□ -0.49
SMG6-213ENST00000573166 NBPF10Q6P3W6 841 aaKnown RBP12.01□□□□□ -0.49
SMG6-213ENST00000573166 NBPF15Q8N660 670 aa12.01□□□□□ -0.49
SMG6-213ENST00000573166 SSH3Q8TE77 659 aa12.01□□□□□ -0.49
SMG6-213ENST00000573166 ZNF287Q9HBT7 754 aa12.01□□□□□ -0.49
SMG6-213ENST00000573166 ATP6V1DQ9Y5K8 247 aa12.01□□□□□ -0.49
SMG6-213ENST00000573166 NRKQ7Z2Y5 1582 aa12.01□□□□□ -0.49
SMG6-213ENST00000573166 UPF3BQ9BZI7 483 aaKnown RBP12.01□□□□□ -0.49
SMG6-213ENST00000573166 BCS1LQ9Y276 419 aa12.01□□□□□ -0.49
SMG6-213ENST00000573166 POLR1AO95602 1720 aaPredicted RBP12.01□□□□□ -0.49
SMG6-213ENST00000573166 ZNF213O14771 459 aa12.01□□□□□ -0.49
SMG6-213ENST00000573166 MCM2P49736 904 aa12.01□□□□□ -0.49
SMG6-213ENST00000573166 PLCB2Q00722 1185 aa12.01□□□□□ -0.49
SMG6-213ENST00000573166 ERFEQ4G0M1 354 aa12.01□□□□□ -0.49
SMG6-213ENST00000573166 NUP133Q8WUM0 1156 aa12.01□□□□□ -0.49
SMG6-213ENST00000573166 XAGE2Q96GT9 111 aa12.01□□□□□ -0.49
SMG6-213ENST00000573166 CWC22Q9HCG8 908 aaKnown RBP12.01□□□□□ -0.49
SMG6-213ENST00000573166 KIF1AQ12756 1690 aa12.01□□□□□ -0.49
SMG6-213ENST00000573166 ADRA2BP18089 450 aa12□□□□□ -0.49
SMG6-213ENST00000573166 COL15A1P39059 1388 aa12□□□□□ -0.49
SMG6-213ENST00000573166 GSTO1P78417 241 aa12□□□□□ -0.49
SMG6-213ENST00000573166 STK3Q13188 491 aa12□□□□□ -0.49
SMG6-213ENST00000573166 SMIM5Q71RC9 77 aa12□□□□□ -0.49
SMG6-213ENST00000573166 PLEKHM2Q8IWE5 1019 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 85.3 ms