RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 SLX4Q8IY92 1834 aa26.15■■□□□ 1.78
VPS53-210ENST00000571456 IPO8O15397 1037 aaKnown RBP26.14■■□□□ 1.78
VPS53-210ENST00000571456 CNBD1Q8NA66 436 aa26.14■■□□□ 1.78
VPS53-210ENST00000571456 WDR33Q9C0J8 1336 aaKnown RBP26.14■■□□□ 1.77
VPS53-210ENST00000571456 EAPPQ56P03 285 aaPredicted RBP26.13■■□□□ 1.77
VPS53-210ENST00000571456 CCDC191Q8NCU4 936 aa26.13■■□□□ 1.77
VPS53-210ENST00000571456 NPHP1O15259 732 aa26.12■■□□□ 1.77
VPS53-210ENST00000571456 ST5P78524 1137 aa26.12■■□□□ 1.77
VPS53-210ENST00000571456 API5Q9BZZ5 524 aaKnown RBP26.12■■□□□ 1.77
VPS53-210ENST00000571456 ADAMTSL1Q8N6G6 1762 aa26.11■■□□□ 1.77
VPS53-210ENST00000571456 HSP90B1P14625 803 aaKnown RBP26.11■■□□□ 1.77
VPS53-210ENST00000571456 NLRP10Q86W26 655 aa26.11■■□□□ 1.77
VPS53-210ENST00000571456 CLEC11AQ9Y240 323 aa26.11■■□□□ 1.77
VPS53-210ENST00000571456 TNRC18O15417 2968 aaPredicted RBP26.11■■□□□ 1.77
VPS53-210ENST00000571456 UBN2Q6ZU65 1347 aa26.11■■□□□ 1.77
VPS53-210ENST00000571456 GPTP24298 496 aa26.1■■□□□ 1.77
VPS53-210ENST00000571456 SOGA3Q5TF21 947 aa26.1■■□□□ 1.77
VPS53-210ENST00000571456 LINS1Q8NG48 757 aa26.1■■□□□ 1.77
VPS53-210ENST00000571456 MYD88Q99836 296 aa26.1■■□□□ 1.77
VPS53-210ENST00000571456 UTP14AQ9BVJ6 771 aaKnown RBP26.1■■□□□ 1.77
VPS53-210ENST00000571456 BCL2L13Q9BXK5 485 aa26.1■■□□□ 1.77
VPS53-210ENST00000571456 RIC1Q4ADV7 1423 aa26.1■■□□□ 1.77
VPS53-210ENST00000571456 GTF2E1P29083 439 aaPredicted RBP26.09■■□□□ 1.77
VPS53-210ENST00000571456 PRR5LQ6MZQ0 368 aa26.09■■□□□ 1.77
VPS53-210ENST00000571456 CNKSR1Q969H4 720 aa26.09■■□□□ 1.77
VPS53-210ENST00000571456 CWC25Q9NXE8 425 aaPredicted RBP26.08■■□□□ 1.77
VPS53-210ENST00000571456 HACL1Q9UJ83 578 aa26.08■■□□□ 1.77
VPS53-210ENST00000571456 ABT1Q9ULW3 272 aaKnown RBP26.08■■□□□ 1.77
VPS53-210ENST00000571456 NTSR2O95665 410 aa26.07■■□□□ 1.76
VPS53-210ENST00000571456 SUSD4Q5VX71 490 aa26.07■■□□□ 1.76
VPS53-210ENST00000571456 PRPF40BQ6NWY9 871 aaKnown RBP26.07■■□□□ 1.76
VPS53-210ENST00000571456 CNTROBQ8N137 903 aa26.07■■□□□ 1.76
VPS53-210ENST00000571456 CCDC24Q8N4L8 307 aa26.07■■□□□ 1.76
VPS53-210ENST00000571456 ALDH1L1O75891 902 aa26.06■■□□□ 1.76
VPS53-210ENST00000571456 STYK1Q6J9G0 422 aa26.06■■□□□ 1.76
VPS53-210ENST00000571456 BEGAINQ9BUH8 593 aa26.06■■□□□ 1.76
VPS53-210ENST00000571456 RCAN3Q9UKA8 241 aa26.06■■□□□ 1.76
VPS53-210ENST00000571456 NOB1Q9ULX3 412 aaKnown RBP26.06■■□□□ 1.76
VPS53-210ENST00000571456 SH3TC1Q8TE82 1336 aa26.06■■□□□ 1.76
VPS53-210ENST00000571456 ATP5J2-PTCD1G3V325 749 aa26.05■■□□□ 1.76
VPS53-210ENST00000571456 EPHX2P34913 555 aa26.05■■□□□ 1.76
VPS53-210ENST00000571456 MAP1SQ66K74 1059 aaPredicted RBP26.05■■□□□ 1.76
VPS53-210ENST00000571456 PNMA8AQ86V59 439 aaPredicted RBP26.05■■□□□ 1.76
VPS53-210ENST00000571456 TRMT112Q9UI30 125 aaKnown RBP26.05■■□□□ 1.76
VPS53-210ENST00000571456 THSD7BQ9C0I4 1608 aa26.05■■□□□ 1.76
VPS53-210ENST00000571456 NEURL1BA8MQ27 555 aa26.04■■□□□ 1.76
VPS53-210ENST00000571456 SLC10A5Q5PT55 438 aa26.04■■□□□ 1.76
VPS53-210ENST00000571456 ZBTB38Q8NAP3 1195 aaPredicted RBP26.04■■□□□ 1.76
VPS53-210ENST00000571456 BCAR3O75815 825 aa26.03■■□□□ 1.76
VPS53-210ENST00000571456 IGKV5-2P06315 115 aa26.03■■□□□ 1.76
VPS53-210ENST00000571456 MS4A1P11836 297 aa26.03■■□□□ 1.76
VPS53-210ENST00000571456 BEND3Q5T5X7 828 aa26.03■■□□□ 1.76
VPS53-210ENST00000571456 ZKSCAN2Q63HK3 967 aa26.03■■□□□ 1.76
VPS53-210ENST00000571456 SRCIN1Q9C0H9 1055 aa26.03■■□□□ 1.76
VPS53-210ENST00000571456 ZNF541Q9H0D2 1346 aa26.03■■□□□ 1.76
VPS53-210ENST00000571456 F6X3S4 739 aa26.02■■□□□ 1.76
VPS53-210ENST00000571456 PCCAP05165 728 aaPredicted RBP26.02■■□□□ 1.76
VPS53-210ENST00000571456 SRGNP10124 158 aa26.02■■□□□ 1.76
VPS53-210ENST00000571456 CCT4P50991 539 aaKnown RBP26.02■■□□□ 1.76
VPS53-210ENST00000571456 ATF7IPQ6VMQ6 1270 aa26.02■■□□□ 1.76
VPS53-210ENST00000571456 LAMB2P55268 1798 aa26.01■■□□□ 1.75
VPS53-210ENST00000571456 GCKRQ14397 625 aa26.01■■□□□ 1.75
VPS53-210ENST00000571456 MASTLQ96GX5 879 aa26.01■■□□□ 1.75
VPS53-210ENST00000571456 CDHR2Q9BYE9 1310 aa26■■□□□ 1.75
VPS53-210ENST00000571456 KLRG2A4D1S0 409 aaPredicted RBP26■■□□□ 1.75
VPS53-210ENST00000571456 FAM177BA6PVY3 158 aa26■■□□□ 1.75
VPS53-210ENST00000571456 SLC4A10Q6U841 1118 aa26■■□□□ 1.75
VPS53-210ENST00000571456 GOLGA6L2Q8N9W4 650 aaPredicted RBP26■■□□□ 1.75
VPS53-210ENST00000571456 CAPNS2Q96L46 248 aa26■■□□□ 1.75
VPS53-210ENST00000571456 CASP8AP2Q9UKL3 1982 aa25.99■■□□□ 1.75
VPS53-210ENST00000571456 ECE1P42892 770 aa25.99■■□□□ 1.75
VPS53-210ENST00000571456 CCDC93Q567U6 631 aa25.99■■□□□ 1.75
VPS53-210ENST00000571456 FRAT1Q92837 279 aaPredicted RBP25.99■■□□□ 1.75
VPS53-210ENST00000571456 CWF19L2Q2TBE0 894 aaKnown RBP25.98■■□□□ 1.75
VPS53-210ENST00000571456 PAXIP1Q6ZW49 1069 aaPredicted RBP25.98■■□□□ 1.75
VPS53-210ENST00000571456 C7orf43Q8WVR3 580 aa25.98■■□□□ 1.75
VPS53-210ENST00000571456 NLRP3Q96P20 1036 aa25.98■■□□□ 1.75
VPS53-210ENST00000571456 GPR101Q96P66 508 aaPredicted RBP25.98■■□□□ 1.75
VPS53-210ENST00000571456 ABCC4O15439 1325 aa25.97■■□□□ 1.75
VPS53-210ENST00000571456 NUTM1Q86Y26 1132 aa25.97■■□□□ 1.75
VPS53-210ENST00000571456 ZNF277Q9NRM2 450 aaPredicted RBP25.97■■□□□ 1.75
VPS53-210ENST00000571456 TRPM7Q96QT4 1865 aa25.97■■□□□ 1.75
VPS53-210ENST00000571456 H7C1W4 665 aa25.96■■□□□ 1.75
VPS53-210ENST00000571456 TRIM27P14373 513 aa25.96■■□□□ 1.75
VPS53-210ENST00000571456 FKBP4Q02790 459 aaKnown RBP eCLIP25.96■■□□□ 1.75
VPS53-210ENST00000571456 HDAC5Q9UQL6 1122 aa25.96■■□□□ 1.75
VPS53-210ENST00000571456 ABCC12Q96J65 1359 aa25.95■■□□□ 1.75
VPS53-210ENST00000571456 DDX60Q8IY21 1712 aaKnown RBP25.95■■□□□ 1.74
VPS53-210ENST00000571456 MYH3P11055 1940 aa25.95■■□□□ 1.74
VPS53-210ENST00000571456 CRY2Q49AN0 593 aa25.95■■□□□ 1.74
VPS53-210ENST00000571456 INTS3Q68E01 1043 aaKnown RBP25.95■■□□□ 1.74
VPS53-210ENST00000571456 FAM89AQ96GI7 184 aa25.95■■□□□ 1.74
VPS53-210ENST00000571456 MCOLN1Q9GZU1 580 aa25.95■■□□□ 1.74
VPS53-210ENST00000571456 TSKSQ9UJT2 592 aa25.95■■□□□ 1.74
VPS53-210ENST00000571456 GRM8O00222 908 aa25.94■■□□□ 1.74
VPS53-210ENST00000571456 IRS4O14654 1257 aaPredicted RBP25.94■■□□□ 1.74
VPS53-210ENST00000571456 GRM1Q13255 1194 aa25.94■■□□□ 1.74
VPS53-210ENST00000571456 CYP4F22Q6NT55 531 aa25.94■■□□□ 1.74
VPS53-210ENST00000571456 C9orf78Q9NZ63 289 aaPredicted RBP25.94■■□□□ 1.74
VPS53-210ENST00000571456 FTSJ3Q8IY81 847 aaKnown RBP25.93■■□□□ 1.74
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms