RNA–Protein interactions for RNA: ENST00000571263.2

CDRT1-206, CMT1A duplicated region transcript 1, humanhuman

TSL 1 (best)

Gene CDRT1, Length 800 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDRT1-206ENST00000571263 EPHA10Q5JZY3 1008 aa14.77□□□□□ -0.05
CDRT1-206ENST00000571263 CHMP3Q9Y3E7 222 aa14.77□□□□□ -0.05
CDRT1-206ENST00000571263 PARP3Q9Y6F1 533 aa14.77□□□□□ -0.05
CDRT1-206ENST00000571263 ERFEQ4G0M1 354 aa14.76□□□□□ -0.05
CDRT1-206ENST00000571263 KIF1BPQ96EK5 621 aa14.76□□□□□ -0.05
CDRT1-206ENST00000571263 LRRCC1Q9C099 1032 aa14.76□□□□□ -0.05
CDRT1-206ENST00000571263 POLRMTO00411 1230 aaKnown RBP14.75□□□□□ -0.05
CDRT1-206ENST00000571263 CIAO1O76071 339 aa14.75□□□□□ -0.05
CDRT1-206ENST00000571263 RFX5P48382 616 aaPredicted RBP14.75□□□□□ -0.05
CDRT1-206ENST00000571263 OS9Q13438 667 aaPredicted RBP14.75□□□□□ -0.05
CDRT1-206ENST00000571263 TAF7LQ5H9L4 462 aa14.75□□□□□ -0.05
CDRT1-206ENST00000571263 ANKRD45Q5TZF3 282 aa14.75□□□□□ -0.05
CDRT1-206ENST00000571263 CHD1LQ86WJ1 897 aa14.75□□□□□ -0.05
CDRT1-206ENST00000571263 NUTM1Q86Y26 1132 aa14.75□□□□□ -0.05
CDRT1-206ENST00000571263 PDZRN3Q9UPQ7 1066 aa14.75□□□□□ -0.05
CDRT1-206ENST00000571263 HCLS1P14317 486 aaPredicted RBP14.74□□□□□ -0.05
CDRT1-206ENST00000571263 PTPN12Q05209 780 aaKnown RBP14.74□□□□□ -0.05
CDRT1-206ENST00000571263 PRR5LQ6MZQ0 368 aa14.74□□□□□ -0.05
CDRT1-206ENST00000571263 CDC5LQ99459 802 aaKnown RBP14.74□□□□□ -0.05
CDRT1-206ENST00000571263 TUBGCP6Q96RT7 1819 aa14.73□□□□□ -0.05
CDRT1-206ENST00000571263 LAMB2P55268 1798 aa14.73□□□□□ -0.05
CDRT1-206ENST00000571263 ITGA6P23229 1130 aa14.73□□□□□ -0.05
CDRT1-206ENST00000571263 IL15P40933 162 aaPredicted RBP14.73□□□□□ -0.05
CDRT1-206ENST00000571263 SYNE4Q8N205 404 aa14.73□□□□□ -0.05
CDRT1-206ENST00000571263 EXOC6BQ9Y2D4 811 aa14.73□□□□□ -0.05
CDRT1-206ENST00000571263 EYA2O00167 538 aa14.72□□□□□ -0.05
CDRT1-206ENST00000571263 MMP10P09238 476 aa14.72□□□□□ -0.05
CDRT1-206ENST00000571263 CLASRPQ8N2M8 674 aaKnown RBP14.72□□□□□ -0.05
CDRT1-206ENST00000571263 RHPN1Q8TCX5 695 aa14.72□□□□□ -0.05
CDRT1-206ENST00000571263 BRIP1Q9BX63 1249 aa14.72□□□□□ -0.05
CDRT1-206ENST00000571263 MYH3P11055 1940 aa14.71□□□□□ -0.05
CDRT1-206ENST00000571263 KLRG2A4D1S0 409 aaPredicted RBP14.71□□□□□ -0.05
CDRT1-206ENST00000571263 PDE6BP35913 854 aa14.71□□□□□ -0.05
CDRT1-206ENST00000571263 IGHMBP2P38935 993 aaKnown RBP14.71□□□□□ -0.05
CDRT1-206ENST00000571263 DDR1Q08345 913 aa14.71□□□□□ -0.05
CDRT1-206ENST00000571263 FAM161AQ3B820 660 aa14.71□□□□□ -0.05
CDRT1-206ENST00000571263 DDX46Q7L014 1031 aaKnown RBP14.71□□□□□ -0.05
CDRT1-206ENST00000571263 MPHOSPH8Q99549 860 aa14.71□□□□□ -0.05
CDRT1-206ENST00000571263 GREM2Q9H772 168 aa14.71□□□□□ -0.05
CDRT1-206ENST00000571263 EP400Q96L91 3159 aa14.7□□□□□ -0.06
CDRT1-206ENST00000571263 DDX60Q8IY21 1712 aaKnown RBP14.7□□□□□ -0.06
CDRT1-206ENST00000571263 LDHAL6AQ6ZMR3 332 aa14.7□□□□□ -0.06
CDRT1-206ENST00000571263 MTFR1LQ9H019 292 aa14.7□□□□□ -0.06
CDRT1-206ENST00000571263 GPR108Q9NPR9 543 aa14.7□□□□□ -0.06
CDRT1-206ENST00000571263 AKAP2Q9Y2D5 859 aa14.7□□□□□ -0.06
CDRT1-206ENST00000571263 ANKRD18AQ8IVF6 992 aa14.69□□□□□ -0.06
CDRT1-206ENST00000571263 RPGRQ92834 1020 aaKnown RBP14.69□□□□□ -0.06
CDRT1-206ENST00000571263 RBM17Q96I25 401 aaKnown RBP14.69□□□□□ -0.06
CDRT1-206ENST00000571263 LNPKQ9C0E8 428 aa14.69□□□□□ -0.06
CDRT1-206ENST00000571263 CEP126Q9P2H0 1117 aa14.69□□□□□ -0.06
CDRT1-206ENST00000571263 PA2G4Q9UQ80 394 aaKnown RBP14.69□□□□□ -0.06
CDRT1-206ENST00000571263 ABCC12Q96J65 1359 aa14.69□□□□□ -0.06
CDRT1-206ENST00000571263 NRXN2Q9P2S2 1712 aa14.69□□□□□ -0.06
CDRT1-206ENST00000571263 MROH5Q6ZUA9 1318 aa14.68□□□□□ -0.06
CDRT1-206ENST00000571263 POLD1P28340 1107 aa14.68□□□□□ -0.06
CDRT1-206ENST00000571263 CRY2Q49AN0 593 aa14.68□□□□□ -0.06
CDRT1-206ENST00000571263 TMC4Q7Z404 712 aa14.68□□□□□ -0.06
CDRT1-206ENST00000571263 CNNM1Q9NRU3 951 aa14.68□□□□□ -0.06
CDRT1-206ENST00000571263 APBB1O00213 710 aa14.67□□□□□ -0.06
CDRT1-206ENST00000571263 BBOX1O75936 387 aa14.67□□□□□ -0.06
CDRT1-206ENST00000571263 SASH1O94885 1247 aa14.67□□□□□ -0.06
CDRT1-206ENST00000571263 ALDH1B1P30837 517 aa14.67□□□□□ -0.06
CDRT1-206ENST00000571263 HOXA10P31260 410 aaPredicted RBP14.67□□□□□ -0.06
CDRT1-206ENST00000571263 RPS8P62241 208 aaKnown RBP14.67□□□□□ -0.06
CDRT1-206ENST00000571263 GPATCH3Q96I76 525 aa14.67□□□□□ -0.06
CDRT1-206ENST00000571263 CCDC85AQ96PX6 553 aaPredicted RBP14.67□□□□□ -0.06
CDRT1-206ENST00000571263 CRAMP1Q96RY5 1269 aa14.67□□□□□ -0.06
CDRT1-206ENST00000571263 SIL1Q9H173 461 aa14.67□□□□□ -0.06
CDRT1-206ENST00000571263 BSDC1Q9NW68 430 aaPredicted RBP14.67□□□□□ -0.06
CDRT1-206ENST00000571263 RIPOR2Q9Y4F9 1068 aa14.67□□□□□ -0.06
CDRT1-206ENST00000571263 IFIT2P09913 472 aaKnown RBP14.66□□□□□ -0.06
CDRT1-206ENST00000571263 R3HDM1Q15032 1099 aaKnown RBP14.66□□□□□ -0.06
CDRT1-206ENST00000571263 MSL1Q68DK7 614 aa14.66□□□□□ -0.06
CDRT1-206ENST00000571263 ATG9AQ7Z3C6 839 aa14.66□□□□□ -0.06
CDRT1-206ENST00000571263 KLHDC4Q8TBB5 520 aa14.66□□□□□ -0.06
CDRT1-206ENST00000571263 ZNF594Q96JF6 807 aaPredicted RBP14.66□□□□□ -0.06
CDRT1-206ENST00000571263 OSBPL3Q9H4L5 887 aa14.66□□□□□ -0.06
CDRT1-206ENST00000571263 NPR1P16066 1061 aa14.65□□□□□ -0.06
CDRT1-206ENST00000571263 GRAPQ13588 217 aa14.65□□□□□ -0.06
CDRT1-206ENST00000571263 GRAPLQ8TC17 118 aaPredicted RBP14.65□□□□□ -0.06
CDRT1-206ENST00000571263 ANKRD2Q9GZV1 360 aa14.65□□□□□ -0.06
CDRT1-206ENST00000571263 AOX1Q06278 1338 aa14.65□□□□□ -0.06
CDRT1-206ENST00000571263 TTC41PQ6P2S7 1318 aa14.65□□□□□ -0.06
CDRT1-206ENST00000571263 H0YIN7 160 aa14.64□□□□□ -0.07
CDRT1-206ENST00000571263 PDE8BO95263 885 aa14.64□□□□□ -0.07
CDRT1-206ENST00000571263 RGS3P49796 1198 aa14.64□□□□□ -0.07
CDRT1-206ENST00000571263 TFCP2Q12800 502 aa14.64□□□□□ -0.07
CDRT1-206ENST00000571263 LRRC24Q50LG9 513 aa14.64□□□□□ -0.07
CDRT1-206ENST00000571263 METTL24Q5JXM2 366 aa14.64□□□□□ -0.07
CDRT1-206ENST00000571263 MASTLQ96GX5 879 aa14.64□□□□□ -0.07
CDRT1-206ENST00000571263 IL1RAPL2Q9NP60 686 aa14.64□□□□□ -0.07
CDRT1-206ENST00000571263 SEC31BQ9NQW1 1179 aa14.64□□□□□ -0.07
CDRT1-206ENST00000571263 STAP2Q9UGK3 403 aa14.64□□□□□ -0.07
CDRT1-206ENST00000571263 ERC2O15083 957 aa14.63□□□□□ -0.07
CDRT1-206ENST00000571263 SMARCA5O60264 1052 aaPredicted RBP14.63□□□□□ -0.07
CDRT1-206ENST00000571263 MX1P20591 662 aa14.63□□□□□ -0.07
CDRT1-206ENST00000571263 TNNI3KQ59H18 835 aa14.63□□□□□ -0.07
CDRT1-206ENST00000571263 STYK1Q6J9G0 422 aa14.63□□□□□ -0.07
CDRT1-206ENST00000571263 C3orf67Q6ZVT6 689 aa14.63□□□□□ -0.07
CDRT1-206ENST00000571263 PLEKHM2Q8IWE5 1019 aa14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms