RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP4.14□□□□□ -1.75
VPS35-209ENST00000568642 DEPDC5O75140 1603 aa4.13□□□□□ -1.75
VPS35-209ENST00000568642 CNTLNQ9NXG0 1405 aa4.13□□□□□ -1.75
VPS35-209ENST00000568642 ITSN2Q9NZM3 1697 aa4.13□□□□□ -1.75
VPS35-209ENST00000568642 CDC14CA4D256 554 aa4.13□□□□□ -1.75
VPS35-209ENST00000568642 KRBA1A5PL33 1030 aa4.13□□□□□ -1.75
VPS35-209ENST00000568642 FAM196BA6NMK8 535 aa4.13□□□□□ -1.75
VPS35-209ENST00000568642 LZTS3O60299 673 aaPredicted RBP4.13□□□□□ -1.75
VPS35-209ENST00000568642 ICMTO60725 284 aa4.13□□□□□ -1.75
VPS35-209ENST00000568642 CENPBP07199 599 aaPredicted RBP4.13□□□□□ -1.75
VPS35-209ENST00000568642 CBLBQ13191 982 aa4.13□□□□□ -1.75
VPS35-209ENST00000568642 CSPP1Q1MSJ5 1256 aa4.13□□□□□ -1.75
VPS35-209ENST00000568642 LINC01559Q495D7 138 aa4.13□□□□□ -1.75
VPS35-209ENST00000568642 HSP90AB4PQ58FF6 505 aa4.13□□□□□ -1.75
VPS35-209ENST00000568642 SPTY2D1Q68D10 685 aaPredicted RBP4.13□□□□□ -1.75
VPS35-209ENST00000568642 PLEKHM2Q8IWE5 1019 aa4.13□□□□□ -1.75
VPS35-209ENST00000568642 TMTC2Q8N394 836 aa4.13□□□□□ -1.75
VPS35-209ENST00000568642 BCL11AQ9H165 835 aa4.13□□□□□ -1.75
VPS35-209ENST00000568642 IRF2BPLQ9H1B7 796 aa4.13□□□□□ -1.75
VPS35-209ENST00000568642 PRM3Q9NNZ6 103 aa4.13□□□□□ -1.75
VPS35-209ENST00000568642 GABBR1Q9UBS5 961 aa4.13□□□□□ -1.75
VPS35-209ENST00000568642 EGFL7Q9UHF1 273 aa4.13□□□□□ -1.75
VPS35-209ENST00000568642 ATP1B4Q9UN42 357 aaPredicted RBP4.13□□□□□ -1.75
VPS35-209ENST00000568642 PITPNM2Q9BZ72 1349 aa4.13□□□□□ -1.75
VPS35-209ENST00000568642 NPHP4O75161 1426 aaPredicted RBP4.12□□□□□ -1.75
VPS35-209ENST00000568642 SPHKAPQ2M3C7 1700 aa4.12□□□□□ -1.75
VPS35-209ENST00000568642 AGLP35573 1532 aa4.12□□□□□ -1.75
VPS35-209ENST00000568642 USP17L15C9J2P7 530 aa4.12□□□□□ -1.75
VPS35-209ENST00000568642 USP17L10C9JJH3 530 aa4.12□□□□□ -1.75
VPS35-209ENST00000568642 USP17L13C9JLJ4 530 aa4.12□□□□□ -1.75
VPS35-209ENST00000568642 USP17L12C9JPN9 530 aa4.12□□□□□ -1.75
VPS35-209ENST00000568642 USP17L11C9JVI0 530 aa4.12□□□□□ -1.75
VPS35-209ENST00000568642 USP17L21D6R901 530 aa4.12□□□□□ -1.75
VPS35-209ENST00000568642 USP17L18D6R9N7 530 aa4.12□□□□□ -1.75
VPS35-209ENST00000568642 USP17L22D6RA61 530 aa4.12□□□□□ -1.75
VPS35-209ENST00000568642 USP17L17D6RBQ6 530 aa4.12□□□□□ -1.75
VPS35-209ENST00000568642 USP17L19D6RCP7 530 aa4.12□□□□□ -1.75
VPS35-209ENST00000568642 USP17L20D6RJB6 530 aa4.12□□□□□ -1.75
VPS35-209ENST00000568642 DLL1O00548 723 aa4.12□□□□□ -1.75
VPS35-209ENST00000568642 JUNDP17535 347 aa4.12□□□□□ -1.75
VPS35-209ENST00000568642 IGBP1P78318 339 aa4.12□□□□□ -1.75
VPS35-209ENST00000568642 USP17L24Q0WX57 530 aa4.12□□□□□ -1.75
VPS35-209ENST00000568642 BMS1Q14692 1282 aaKnown RBP4.12□□□□□ -1.75
VPS35-209ENST00000568642 ZNF800Q2TB10 664 aaPredicted RBP eCLIP4.12□□□□□ -1.75
VPS35-209ENST00000568642 GRIPAP1Q4V328 841 aa4.12□□□□□ -1.75
VPS35-209ENST00000568642 GORABQ5T7V8 394 aa4.12□□□□□ -1.75
VPS35-209ENST00000568642 PRPF38BQ5VTL8 546 aaKnown RBP4.12□□□□□ -1.75
VPS35-209ENST00000568642 SH3RF1Q7Z6J0 888 aa4.12□□□□□ -1.75
VPS35-209ENST00000568642 DNAJC5GQ8N7S2 189 aa4.12□□□□□ -1.75
VPS35-209ENST00000568642 SYMPKQ92797 1274 aaKnown RBP4.12□□□□□ -1.75
VPS35-209ENST00000568642 TGIF2Q9GZN2 237 aa4.12□□□□□ -1.75
VPS35-209ENST00000568642 ACBD3Q9H3P7 528 aa4.12□□□□□ -1.75
VPS35-209ENST00000568642 GOLGA2P5Q9HBQ8 144 aa4.12□□□□□ -1.75
VPS35-209ENST00000568642 PCDH12Q9NPG4 1184 aa4.12□□□□□ -1.75
VPS35-209ENST00000568642 TERF2IPQ9NYB0 399 aa4.12□□□□□ -1.75
VPS35-209ENST00000568642 NOP58Q9Y2X3 529 aaKnown RBP4.12□□□□□ -1.75
VPS35-209ENST00000568642 CLTCQ00610 1675 aaKnown RBP4.12□□□□□ -1.75
VPS35-209ENST00000568642 A2ML1A8K2U0 1454 aa4.11□□□□□ -1.75
VPS35-209ENST00000568642 IQGAP2Q13576 1575 aa4.11□□□□□ -1.75
VPS35-209ENST00000568642 A0A0U1RQG5 324 aaPredicted RBP4.11□□□□□ -1.75
VPS35-209ENST00000568642 USP17L3A6NCW0 530 aa4.11□□□□□ -1.75
VPS35-209ENST00000568642 USP17L4A6NCW7 530 aa4.11□□□□□ -1.75
VPS35-209ENST00000568642 U2SURPO15042 1029 aaKnown RBP4.11□□□□□ -1.75
VPS35-209ENST00000568642 P4HBP07237 508 aaKnown RBP4.11□□□□□ -1.75
VPS35-209ENST00000568642 NR3C2P08235 984 aa4.11□□□□□ -1.75
VPS35-209ENST00000568642 ATP2B4P23634 1241 aa4.11□□□□□ -1.75
VPS35-209ENST00000568642 EVA1CP58658 441 aa4.11□□□□□ -1.75
VPS35-209ENST00000568642 AMPD3Q01432 767 aa4.11□□□□□ -1.75
VPS35-209ENST00000568642 GUCA2AQ02747 115 aa4.11□□□□□ -1.75
VPS35-209ENST00000568642 FOXD4L6Q3SYB3 417 aaPredicted RBP4.11□□□□□ -1.75
VPS35-209ENST00000568642 ZMYM1Q5SVZ6 1142 aa4.11□□□□□ -1.75
VPS35-209ENST00000568642 USP17L2Q6R6M4 530 aa4.11□□□□□ -1.75
VPS35-209ENST00000568642 CLEC4GQ6UXB4 293 aa4.11□□□□□ -1.75
VPS35-209ENST00000568642 FOXD4L3Q6VB84 417 aaPredicted RBP4.11□□□□□ -1.75
VPS35-209ENST00000568642 USP17L1Q7RTZ2 530 aa4.11□□□□□ -1.75
VPS35-209ENST00000568642 MEIOBQ8N635 442 aa4.11□□□□□ -1.75
VPS35-209ENST00000568642 BEND7Q8N7W2 519 aaPredicted RBP4.11□□□□□ -1.75
VPS35-209ENST00000568642 MORC4Q8TE76 937 aa4.11□□□□□ -1.75
VPS35-209ENST00000568642 NUDT12Q9BQG2 462 aa4.11□□□□□ -1.75
VPS35-209ENST00000568642 NLRP2Q9NX02 1062 aa4.11□□□□□ -1.75
VPS35-209ENST00000568642 MAGEC2Q9UBF1 373 aaPredicted RBP4.11□□□□□ -1.75
VPS35-209ENST00000568642 IQSEC3Q9UPP2 1182 aaPredicted RBP4.11□□□□□ -1.75
VPS35-209ENST00000568642 MRPL42Q9Y6G3 142 aaKnown RBP4.11□□□□□ -1.75
VPS35-209ENST00000568642 RGPD1P0DJD0 1748 aa4.11□□□□□ -1.75
VPS35-209ENST00000568642 ATP10BO94823 1461 aa4.11□□□□□ -1.75
VPS35-209ENST00000568642 RALGAPBQ86X10 1494 aa4.11□□□□□ -1.75
VPS35-209ENST00000568642 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP4.11□□□□□ -1.75
VPS35-209ENST00000568642 DISP1Q96F81 1524 aa4.11□□□□□ -1.75
VPS35-209ENST00000568642 KDM5DQ9BY66 1539 aa4.11□□□□□ -1.75
VPS35-209ENST00000568642 ZC3H13Q5T200 1668 aaKnown RBP4.1□□□□□ -1.75
VPS35-209ENST00000568642 hCG_2014768A0A024R1R8 64 aa4.1□□□□□ -1.75
VPS35-209ENST00000568642 SLC35F4A4IF30 521 aa4.1□□□□□ -1.75
VPS35-209ENST00000568642 FAM83GA6ND36 823 aa4.1□□□□□ -1.75
VPS35-209ENST00000568642 ITGA6P23229 1130 aa4.1□□□□□ -1.75
VPS35-209ENST00000568642 HSD3B2P26439 372 aa4.1□□□□□ -1.75
VPS35-209ENST00000568642 ANAPC15P60006 121 aa4.1□□□□□ -1.75
VPS35-209ENST00000568642 SRSF11Q05519 484 aaKnown RBP4.1□□□□□ -1.75
VPS35-209ENST00000568642 ZNF211Q13398 564 aaPredicted RBP4.1□□□□□ -1.75
VPS35-209ENST00000568642 SERINC3Q13530 473 aa4.1□□□□□ -1.75
VPS35-209ENST00000568642 SV2AQ7L0J3 742 aa4.1□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms