RNA–Protein interactions for RNA: ENST00000568472.6

CLN3-234, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 1,011 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-234ENST00000568472 GRAPQ13588 217 aa27.68■■■□□ 2.02
CLN3-234ENST00000568472 GRIPAP1Q4V328 841 aa27.68■■■□□ 2.02
CLN3-234ENST00000568472 TTLL11Q8NHH1 800 aa27.68■■■□□ 2.02
CLN3-234ENST00000568472 GRAPLQ8TC17 118 aaPredicted RBP27.68■■■□□ 2.02
CLN3-234ENST00000568472 USP44Q9H0E7 712 aa27.68■■■□□ 2.02
CLN3-234ENST00000568472 TMX4Q9H1E5 349 aaPredicted RBP27.68■■■□□ 2.02
CLN3-234ENST00000568472 FTSJ3Q8IY81 847 aaKnown RBP27.67■■■□□ 2.02
CLN3-234ENST00000568472 GOLGA6L2Q8N9W4 650 aaPredicted RBP27.67■■■□□ 2.02
CLN3-234ENST00000568472 C7orf43Q8WVR3 580 aa27.67■■■□□ 2.02
CLN3-234ENST00000568472 RTL9Q8NET4 1388 aa27.66■■■□□ 2.02
CLN3-234ENST00000568472 C21orf2O43822 256 aa27.66■■■□□ 2.02
CLN3-234ENST00000568472 CSF1RP07333 972 aa27.66■■■□□ 2.02
CLN3-234ENST00000568472 ARHGAP27Q6ZUM4 889 aa27.66■■■□□ 2.02
CLN3-234ENST00000568472 DZIP1LQ8IYY4 767 aaKnown RBP27.66■■■□□ 2.02
CLN3-234ENST00000568472 DDX60Q8IY21 1712 aaKnown RBP27.66■■■□□ 2.02
CLN3-234ENST00000568472 NBPF7P0C2Y1 421 aaPredicted RBP27.65■■■□□ 2.02
CLN3-234ENST00000568472 LAMB2P55268 1798 aa27.65■■■□□ 2.02
CLN3-234ENST00000568472 PPEF1O14829 653 aaPredicted RBP27.64■■■□□ 2.02
CLN3-234ENST00000568472 CLUAP1Q96AJ1 413 aa27.64■■■□□ 2.02
CLN3-234ENST00000568472 RPS8P62241 208 aaKnown RBP27.63■■■□□ 2.01
CLN3-234ENST00000568472 FOXO4P98177 505 aa27.63■■■□□ 2.01
CLN3-234ENST00000568472 CCDC93Q567U6 631 aa27.63■■■□□ 2.01
CLN3-234ENST00000568472 RTKN2Q8IZC4 609 aa27.63■■■□□ 2.01
CLN3-234ENST00000568472 CDC5LQ99459 802 aaKnown RBP27.63■■■□□ 2.01
CLN3-234ENST00000568472 ATP6V0A2Q9Y487 856 aa27.63■■■□□ 2.01
CLN3-234ENST00000568472 GNAI3P08754 354 aa27.62■■■□□ 2.01
CLN3-234ENST00000568472 SP8Q8IXZ3 490 aa27.62■■■□□ 2.01
CLN3-234ENST00000568472 ARFGEF1Q9Y6D6 1849 aa27.62■■■□□ 2.01
CLN3-234ENST00000568472 UBTFL1P0CB47 393 aaPredicted RBP27.61■■■□□ 2.01
CLN3-234ENST00000568472 ZNF219Q9P2Y4 722 aaPredicted RBP27.61■■■□□ 2.01
CLN3-234ENST00000568472 TMEM57Q8N5G2 664 aa27.6■■■□□ 2.01
CLN3-234ENST00000568472 SUCLG2Q96I99 432 aa27.6■■■□□ 2.01
CLN3-234ENST00000568472 GREM2Q9H772 168 aa27.6■■■□□ 2.01
CLN3-234ENST00000568472 LMBR1LQ6UX01 489 aa27.59■■■□□ 2.01
CLN3-234ENST00000568472 ANKRD18AQ8IVF6 992 aa27.59■■■□□ 2.01
CLN3-234ENST00000568472 CELF1Q92879 486 aaKnown RBP27.59■■■□□ 2.01
CLN3-234ENST00000568472 SEC31BQ9NQW1 1179 aa27.59■■■□□ 2.01
CLN3-234ENST00000568472 SLX4Q8IY92 1834 aa27.58■■■□□ 2.01
CLN3-234ENST00000568472 IFIT5Q13325 482 aaKnown RBP27.58■■■□□ 2.01
CLN3-234ENST00000568472 CCDC85AQ96PX6 553 aaPredicted RBP27.58■■■□□ 2.01
CLN3-234ENST00000568472 TNNQ9UQP3 1299 aa27.58■■■□□ 2.01
CLN3-234ENST00000568472 LTBP3Q9NS15 1303 aa27.58■■■□□ 2.01
CLN3-234ENST00000568472 ANKRD18BA2A2Z9 1011 aa27.57■■■□□ 2
CLN3-234ENST00000568472 ITGA6P23229 1130 aa27.57■■■□□ 2
CLN3-234ENST00000568472 RABL6Q3YEC7 729 aaPredicted RBP27.57■■■□□ 2
CLN3-234ENST00000568472 EPHA10Q5JZY3 1008 aa27.57■■■□□ 2
CLN3-234ENST00000568472 KAZALD1Q96I82 304 aa27.57■■■□□ 2
CLN3-234ENST00000568472 GOLGB1Q14789 3259 aaKnown RBP27.56■■■□□ 2
CLN3-234ENST00000568472 PDE3AQ14432 1141 aa27.56■■■□□ 2
CLN3-234ENST00000568472 CCDC57Q2TAC2 916 aa27.56■■■□□ 2
CLN3-234ENST00000568472 IGHMBP2P38935 993 aaKnown RBP27.55■■■□□ 2
CLN3-234ENST00000568472 FAM161AQ3B820 660 aa27.55■■■□□ 2
CLN3-234ENST00000568472 MEIS3Q99687 375 aa27.55■■■□□ 2
CLN3-234ENST00000568472 TAOK3Q9H2K8 898 aa27.55■■■□□ 2
CLN3-234ENST00000568472 BICC1Q9H694 974 aaKnown RBP27.55■■■□□ 2
CLN3-234ENST00000568472 CHMP3Q9Y3E7 222 aa27.55■■■□□ 2
CLN3-234ENST00000568472 NFKBIEO00221 500 aa27.54■■■□□ 2
CLN3-234ENST00000568472 RLBP1P12271 317 aa27.54■■■□□ 2
CLN3-234ENST00000568472 FKBP4Q02790 459 aaKnown RBP eCLIP27.54■■■□□ 2
CLN3-234ENST00000568472 ITPRIPQ8IWB1 547 aa27.54■■■□□ 2
CLN3-234ENST00000568472 PSMD1Q99460 953 aa27.54■■■□□ 2
CLN3-234ENST00000568472 BSDC1Q9NW68 430 aaPredicted RBP27.54■■■□□ 2
CLN3-234ENST00000568472 LMNB1P20700 586 aa27.53■■■□□ 2
CLN3-234ENST00000568472 CHMP4BQ9H444 224 aaKnown RBP27.53■■■□□ 2
CLN3-234ENST00000568472 PANK1Q8TE04 598 aa27.52■■■□□ 2
CLN3-234ENST00000568472 MPHOSPH8Q99549 860 aa27.52■■■□□ 2
CLN3-234ENST00000568472 PLIN1O60240 522 aa27.51■■□□□ 1.99
CLN3-234ENST00000568472 GNAI2P04899 355 aa27.51■■□□□ 1.99
CLN3-234ENST00000568472 OLFM4Q6UX06 510 aa27.51■■□□□ 1.99
CLN3-234ENST00000568472 MPNDQ8N594 471 aa27.51■■□□□ 1.99
CLN3-234ENST00000568472 ANKRD44Q8N8A2 993 aa27.51■■□□□ 1.99
CLN3-234ENST00000568472 SUPT20HQ8NEM7 779 aa27.51■■□□□ 1.99
CLN3-234ENST00000568472 VPS33BQ9H267 617 aa27.51■■□□□ 1.99
CLN3-234ENST00000568472 MYH3P11055 1940 aa27.51■■□□□ 1.99
CLN3-234ENST00000568472 TAF7LQ5H9L4 462 aa27.5■■□□□ 1.99
CLN3-234ENST00000568472 DPP8Q6V1X1 898 aaPredicted RBP27.5■■□□□ 1.99
CLN3-234ENST00000568472 ZBTB7BO15156 539 aaPredicted RBP27.49■■□□□ 1.99
CLN3-234ENST00000568472 RTFDC1Q9BY42 306 aaPredicted RBP27.49■■□□□ 1.99
CLN3-234ENST00000568472 LRRFIP2Q9Y608 721 aaKnown RBP27.49■■□□□ 1.99
CLN3-234ENST00000568472 SNED1Q8TER0 1413 aa27.49■■□□□ 1.99
CLN3-234ENST00000568472 MVPQ14764 893 aaKnown RBP27.48■■□□□ 1.99
CLN3-234ENST00000568472 PODXL2Q9NZ53 605 aa27.48■■□□□ 1.99
CLN3-234ENST00000568472 DDX19BQ9UMR2 479 aa27.48■■□□□ 1.99
CLN3-234ENST00000568472 RASSF7Q02833 373 aa27.47■■□□□ 1.99
CLN3-234ENST00000568472 NSFL1CQ9UNZ2 370 aaKnown RBP27.47■■□□□ 1.99
CLN3-234ENST00000568472 C9orf131Q5VYM1 1079 aa27.46■■□□□ 1.99
CLN3-234ENST00000568472 ANKRD2Q9GZV1 360 aa27.46■■□□□ 1.99
CLN3-234ENST00000568472 MINPP1Q9UNW1 487 aa27.46■■□□□ 1.99
CLN3-234ENST00000568472 CACNA1SQ13698 1873 aa27.46■■□□□ 1.99
CLN3-234ENST00000568472 UTRNP46939 3433 aa27.45■■□□□ 1.98
CLN3-234ENST00000568472 RRP1P56182 461 aaKnown RBP27.45■■□□□ 1.98
CLN3-234ENST00000568472 LDHAL6AQ6ZMR3 332 aa27.45■■□□□ 1.98
CLN3-234ENST00000568472 RNF181Q9P0P0 153 aa27.45■■□□□ 1.98
CLN3-234ENST00000568472 ANKIB1Q9P2G1 1089 aa27.45■■□□□ 1.98
CLN3-234ENST00000568472 ZC3H4Q9UPT8 1303 aaKnown RBP27.44■■□□□ 1.98
CLN3-234ENST00000568472 MTX1Q13505 466 aa27.44■■□□□ 1.98
CLN3-234ENST00000568472 FER1L6Q2WGJ9 1857 aa27.44■■□□□ 1.98
CLN3-234ENST00000568472 XDHP47989 1333 aa27.43■■□□□ 1.98
CLN3-234ENST00000568472 GPSM2P81274 684 aa27.43■■□□□ 1.98
CLN3-234ENST00000568472 COG6Q9Y2V7 657 aa27.43■■□□□ 1.98
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms