RNA–Protein interactions for RNA: ENST00000568452.6

CLN3-233, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,616 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-233ENST00000568452 SEC24BO95487 1268 aa23.28■■□□□ 1.32
CLN3-233ENST00000568452 BCL2L12Q9HB09 334 aa23.28■■□□□ 1.32
CLN3-233ENST00000568452 ANKRD18BA2A2Z9 1011 aa23.27■■□□□ 1.32
CLN3-233ENST00000568452 GLRX3O76003 335 aaKnown RBP23.27■■□□□ 1.32
CLN3-233ENST00000568452 APBA3O96018 575 aa23.27■■□□□ 1.32
CLN3-233ENST00000568452 TBC1D9Q6ZT07 1266 aa23.27■■□□□ 1.32
CLN3-233ENST00000568452 EAF2Q96CJ1 260 aaPredicted RBP23.27■■□□□ 1.32
CLN3-233ENST00000568452 GPR108Q9NPR9 543 aa23.27■■□□□ 1.32
CLN3-233ENST00000568452 ECHDC1Q9NTX5 307 aa23.27■■□□□ 1.32
CLN3-233ENST00000568452 FAM177BA6PVY3 158 aa23.26■■□□□ 1.31
CLN3-233ENST00000568452 SSFA2P28290 1259 aa23.26■■□□□ 1.31
CLN3-233ENST00000568452 TFCP2Q12800 502 aa23.26■■□□□ 1.31
CLN3-233ENST00000568452 TSHZ3Q63HK5 1081 aa23.26■■□□□ 1.31
CLN3-233ENST00000568452 ATG9AQ7Z3C6 839 aa23.26■■□□□ 1.31
CLN3-233ENST00000568452 PI4K2BQ8TCG2 481 aa23.26■■□□□ 1.31
CLN3-233ENST00000568452 NYXQ9GZU5 481 aa23.26■■□□□ 1.31
CLN3-233ENST00000568452 SRP68Q9UHB9 627 aaKnown RBP23.26■■□□□ 1.31
CLN3-233ENST00000568452 ITGA6P23229 1130 aa23.26■■□□□ 1.31
CLN3-233ENST00000568452 SETDB2Q96T68 719 aa23.26■■□□□ 1.31
CLN3-233ENST00000568452 PHF14O94880 888 aa23.25■■□□□ 1.31
CLN3-233ENST00000568452 TNNI3KQ59H18 835 aa23.25■■□□□ 1.31
CLN3-233ENST00000568452 TBC1D9BQ66K14 1250 aa23.25■■□□□ 1.31
CLN3-233ENST00000568452 ZNF594Q96JF6 807 aaPredicted RBP23.25■■□□□ 1.31
CLN3-233ENST00000568452 GREM2Q9H772 168 aa23.25■■□□□ 1.31
CLN3-233ENST00000568452 FPGT-TNNI3KV9GXZ4 949 aa23.25■■□□□ 1.31
CLN3-233ENST00000568452 LAMB2P55268 1798 aa23.24■■□□□ 1.31
CLN3-233ENST00000568452 SMIM5Q71RC9 77 aa23.24■■□□□ 1.31
CLN3-233ENST00000568452 TNS1Q9HBL0 1735 aaKnown RBP23.24■■□□□ 1.31
CLN3-233ENST00000568452 TRIM6-TRIM34B2RNG4 842 aa23.23■■□□□ 1.31
CLN3-233ENST00000568452 HCLS1P14317 486 aaPredicted RBP23.23■■□□□ 1.31
CLN3-233ENST00000568452 CCDC152Q4G0S7 254 aa23.23■■□□□ 1.31
CLN3-233ENST00000568452 CCDC85AQ96PX6 553 aaPredicted RBP23.23■■□□□ 1.31
CLN3-233ENST00000568452 CCDC8Q9H0W5 538 aaPredicted RBP23.23■■□□□ 1.31
CLN3-233ENST00000568452 C4AP0C0L4 1744 aa23.23■■□□□ 1.31
CLN3-233ENST00000568452 EP400Q96L91 3159 aa23.23■■□□□ 1.31
CLN3-233ENST00000568452 UBR3Q6ZT12 1888 aa23.23■■□□□ 1.31
CLN3-233ENST00000568452 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.22■■□□□ 1.31
CLN3-233ENST00000568452 MFAP1P55081 439 aaKnown RBP23.22■■□□□ 1.31
CLN3-233ENST00000568452 BICDL1Q6ZP65 573 aa23.22■■□□□ 1.31
CLN3-233ENST00000568452 AMIGO3Q86WK7 504 aa23.22■■□□□ 1.31
CLN3-233ENST00000568452 PROM2Q8N271 834 aa23.22■■□□□ 1.31
CLN3-233ENST00000568452 CEP126Q9P2H0 1117 aa23.22■■□□□ 1.31
CLN3-233ENST00000568452 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP23.22■■□□□ 1.31
CLN3-233ENST00000568452 RTL9Q8NET4 1388 aa23.22■■□□□ 1.31
CLN3-233ENST00000568452 TUBGCP6Q96RT7 1819 aa23.22■■□□□ 1.31
CLN3-233ENST00000568452 LRRC24Q50LG9 513 aa23.22■■□□□ 1.31
CLN3-233ENST00000568452 GTF2E1P29083 439 aaPredicted RBP23.21■■□□□ 1.31
CLN3-233ENST00000568452 COL24A1Q17RW2 1714 aa23.21■■□□□ 1.31
CLN3-233ENST00000568452 DDX60Q8IY21 1712 aaKnown RBP23.21■■□□□ 1.31
CLN3-233ENST00000568452 CNTROBQ8N137 903 aa23.21■■□□□ 1.31
CLN3-233ENST00000568452 RILPL2Q969X0 211 aa23.21■■□□□ 1.31
CLN3-233ENST00000568452 AKAP2Q9Y2D5 859 aa23.21■■□□□ 1.31
CLN3-233ENST00000568452 SLC10A5Q5PT55 438 aa23.2■■□□□ 1.3
CLN3-233ENST00000568452 LDHAL6AQ6ZMR3 332 aa23.2■■□□□ 1.3
CLN3-233ENST00000568452 CCDC125Q86Z20 511 aa23.2■■□□□ 1.3
CLN3-233ENST00000568452 PUS3Q9BZE2 481 aaKnown RBP23.2■■□□□ 1.3
CLN3-233ENST00000568452 ERFEQ4G0M1 354 aa23.19■■□□□ 1.3
CLN3-233ENST00000568452 TPTE2Q6XPS3 522 aa23.19■■□□□ 1.3
CLN3-233ENST00000568452 NBPF5PQ86XG9 351 aaPredicted RBP23.19■■□□□ 1.3
CLN3-233ENST00000568452 TBC1D32Q96NH3 1257 aa23.19■■□□□ 1.3
CLN3-233ENST00000568452 CNNM1Q9NRU3 951 aa23.19■■□□□ 1.3
CLN3-233ENST00000568452 TLR7Q9NYK1 1049 aaKnown RBP23.19■■□□□ 1.3
CLN3-233ENST00000568452 RGPD3A6NKT7 1758 aaPredicted RBP23.18■■□□□ 1.3
CLN3-233ENST00000568452 RGPD4Q7Z3J3 1758 aa23.18■■□□□ 1.3
CLN3-233ENST00000568452 ILDR2Q71H61 639 aa23.18■■□□□ 1.3
CLN3-233ENST00000568452 DBNLQ9UJU6 430 aaKnown RBP23.18■■□□□ 1.3
CLN3-233ENST00000568452 RIPOR2Q9Y4F9 1068 aa23.18■■□□□ 1.3
CLN3-233ENST00000568452 ZNF609O15014 1411 aa23.17■■□□□ 1.3
CLN3-233ENST00000568452 CARMIL3Q8ND23 1372 aa23.17■■□□□ 1.3
CLN3-233ENST00000568452 BAG6P46379 1132 aa23.17■■□□□ 1.3
CLN3-233ENST00000568452 SF3B3Q15393 1217 aaKnown RBP23.17■■□□□ 1.3
CLN3-233ENST00000568452 DDRGK1Q96HY6 314 aa23.17■■□□□ 1.3
CLN3-233ENST00000568452 C22orf23Q9BZE7 217 aa23.16■■□□□ 1.3
CLN3-233ENST00000568452 LRP5O75197 1615 aa23.16■■□□□ 1.3
CLN3-233ENST00000568452 ATP5JP18859 108 aa23.15■■□□□ 1.3
CLN3-233ENST00000568452 METTL24Q5JXM2 366 aa23.15■■□□□ 1.3
CLN3-233ENST00000568452 FLAD1Q8NFF5 587 aa23.15■■□□□ 1.3
CLN3-233ENST00000568452 EVI5LQ96CN4 794 aa23.15■■□□□ 1.3
CLN3-233ENST00000568452 NEUROD6Q96NK8 337 aa23.15■■□□□ 1.3
CLN3-233ENST00000568452 EN1Q05925 392 aaPredicted RBP23.15■■□□□ 1.3
CLN3-233ENST00000568452 CDC5LQ99459 802 aaKnown RBP23.15■■□□□ 1.3
CLN3-233ENST00000568452 DBNDD2Q9BQY9 259 aa23.15■■□□□ 1.3
CLN3-233ENST00000568452 A0A1B0GUL7 405 aa23.14■■□□□ 1.29
CLN3-233ENST00000568452 CHMLP26374 656 aa23.14■■□□□ 1.29
CLN3-233ENST00000568452 IGHMBP2P38935 993 aaKnown RBP23.14■■□□□ 1.29
CLN3-233ENST00000568452 NFIXQ14938 502 aa23.14■■□□□ 1.29
CLN3-233ENST00000568452 AKT1S1Q96B36 256 aa23.14■■□□□ 1.29
CLN3-233ENST00000568452 IPO9Q96P70 1041 aaKnown RBP23.14■■□□□ 1.29
CLN3-233ENST00000568452 MPHOSPH8Q99549 860 aa23.14■■□□□ 1.29
CLN3-233ENST00000568452 TFCP2L1Q9NZI6 479 aa23.14■■□□□ 1.29
CLN3-233ENST00000568452 MROH5Q6ZUA9 1318 aa23.13■■□□□ 1.29
CLN3-233ENST00000568452 RIC1Q4ADV7 1423 aa23.13■■□□□ 1.29
CLN3-233ENST00000568452 REC8O95072 547 aa23.13■■□□□ 1.29
CLN3-233ENST00000568452 GYS1P13807 737 aa23.13■■□□□ 1.29
CLN3-233ENST00000568452 NLRP3Q96P20 1036 aa23.13■■□□□ 1.29
CLN3-233ENST00000568452 NPHP1O15259 732 aa23.12■■□□□ 1.29
CLN3-233ENST00000568452 MAP4K4O95819 1239 aaPredicted RBP23.12■■□□□ 1.29
CLN3-233ENST00000568452 EZH2Q15910 746 aaKnown RBP23.12■■□□□ 1.29
CLN3-233ENST00000568452 CAMKK2Q96RR4 588 aa23.12■■□□□ 1.29
CLN3-233ENST00000568452 ABCC12Q96J65 1359 aa23.12■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms