RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 SLFN5Q08AF3 891 aa19.25■□□□□ 0.67
VPS39-210ENST00000568357 SF3B3Q15393 1217 aaKnown RBP19.25■□□□□ 0.67
VPS39-210ENST00000568357 DICER1Q9UPY3 1922 aaKnown RBP19.24■□□□□ 0.67
VPS39-210ENST00000568357 E9PSI1 815 aa19.24■□□□□ 0.67
VPS39-210ENST00000568357 BBOX1O75936 387 aa19.24■□□□□ 0.67
VPS39-210ENST00000568357 PCCAP05165 728 aaPredicted RBP19.24■□□□□ 0.67
VPS39-210ENST00000568357 CWF19L2Q2TBE0 894 aaKnown RBP19.24■□□□□ 0.67
VPS39-210ENST00000568357 CC2D2BQ6DHV5 1058 aa19.24■□□□□ 0.67
VPS39-210ENST00000568357 DDX46Q7L014 1031 aaKnown RBP19.24■□□□□ 0.67
VPS39-210ENST00000568357 ZNF277Q9NRM2 450 aaPredicted RBP19.24■□□□□ 0.67
VPS39-210ENST00000568357 SNED1Q8TER0 1413 aa19.24■□□□□ 0.67
VPS39-210ENST00000568357 ARFGEF2Q9Y6D5 1785 aa19.24■□□□□ 0.67
VPS39-210ENST00000568357 FER1L6Q2WGJ9 1857 aa19.23■□□□□ 0.67
VPS39-210ENST00000568357 FKBP5Q13451 457 aaPredicted RBP19.23■□□□□ 0.67
VPS39-210ENST00000568357 ATP6V0A2Q9Y487 856 aa19.23■□□□□ 0.67
VPS39-210ENST00000568357 NEURL1BA8MQ27 555 aa19.22■□□□□ 0.67
VPS39-210ENST00000568357 NEXNQ0ZGT2 675 aa19.22■□□□□ 0.67
VPS39-210ENST00000568357 CREBZFQ9NS37 354 aa19.22■□□□□ 0.67
VPS39-210ENST00000568357 GRAPQ13588 217 aa19.21■□□□□ 0.67
VPS39-210ENST00000568357 CACNA1SQ13698 1873 aa19.21■□□□□ 0.67
VPS39-210ENST00000568357 SP8Q8IXZ3 490 aa19.21■□□□□ 0.67
VPS39-210ENST00000568357 TRMT2AQ8IZ69 625 aaKnown RBP19.21■□□□□ 0.67
VPS39-210ENST00000568357 GRAPLQ8TC17 118 aaPredicted RBP19.21■□□□□ 0.67
VPS39-210ENST00000568357 DNAAF4Q8WXU2 420 aa19.21■□□□□ 0.67
VPS39-210ENST00000568357 PSMD1Q99460 953 aa19.21■□□□□ 0.67
VPS39-210ENST00000568357 PRDM10Q9NQV6 1147 aa19.21■□□□□ 0.67
VPS39-210ENST00000568357 FAM161AQ3B820 660 aa19.2■□□□□ 0.66
VPS39-210ENST00000568357 GRIPAP1Q4V328 841 aa19.2■□□□□ 0.66
VPS39-210ENST00000568357 CELF1Q92879 486 aaKnown RBP19.2■□□□□ 0.66
VPS39-210ENST00000568357 CNTNAP1P78357 1384 aa19.19■□□□□ 0.66
VPS39-210ENST00000568357 F6X3S4 739 aa19.19■□□□□ 0.66
VPS39-210ENST00000568357 POTEIP0CG38 1075 aa19.19■□□□□ 0.66
VPS39-210ENST00000568357 POTEJP0CG39 1038 aa19.19■□□□□ 0.66
VPS39-210ENST00000568357 IARSP41252 1262 aaKnown RBP19.19■□□□□ 0.66
VPS39-210ENST00000568357 H7C1W4 665 aa19.18■□□□□ 0.66
VPS39-210ENST00000568357 PDE8AO60658 829 aa19.18■□□□□ 0.66
VPS39-210ENST00000568357 GCKRQ14397 625 aa19.18■□□□□ 0.66
VPS39-210ENST00000568357 DPY19L2Q6NUT2 758 aa19.18■□□□□ 0.66
VPS39-210ENST00000568357 SEC31BQ9NQW1 1179 aa19.18■□□□□ 0.66
VPS39-210ENST00000568357 CDHR2Q9BYE9 1310 aa19.18■□□□□ 0.66
VPS39-210ENST00000568357 HSP90B1P14625 803 aaKnown RBP19.17■□□□□ 0.66
VPS39-210ENST00000568357 CHADLQ6NUI6 762 aa19.17■□□□□ 0.66
VPS39-210ENST00000568357 LINS1Q8NG48 757 aa19.17■□□□□ 0.66
VPS39-210ENST00000568357 CCDC85AQ96PX6 553 aaPredicted RBP19.17■□□□□ 0.66
VPS39-210ENST00000568357 TMX4Q9H1E5 349 aaPredicted RBP19.17■□□□□ 0.66
VPS39-210ENST00000568357 DDX60Q8IY21 1712 aaKnown RBP19.17■□□□□ 0.66
VPS39-210ENST00000568357 DDNO94850 711 aaPredicted RBP19.16■□□□□ 0.66
VPS39-210ENST00000568357 CTCFP49711 727 aaPredicted RBP19.16■□□□□ 0.66
VPS39-210ENST00000568357 RPS8P62241 208 aaKnown RBP19.16■□□□□ 0.66
VPS39-210ENST00000568357 BEND3Q5T5X7 828 aa19.16■□□□□ 0.66
VPS39-210ENST00000568357 MRPL50Q8N5N7 158 aaKnown RBP19.16■□□□□ 0.66
VPS39-210ENST00000568357 LAMB2P55268 1798 aa19.16■□□□□ 0.66
VPS39-210ENST00000568357 FZD9O00144 591 aa19.15■□□□□ 0.66
VPS39-210ENST00000568357 UBE3BQ7Z3V4 1068 aa19.15■□□□□ 0.66
VPS39-210ENST00000568357 TMC4Q7Z404 712 aa19.15■□□□□ 0.66
VPS39-210ENST00000568357 MPNDQ8N594 471 aa19.15■□□□□ 0.66
VPS39-210ENST00000568357 SSH1Q8WYL5 1049 aa19.15■□□□□ 0.66
VPS39-210ENST00000568357 RTFDC1Q9BY42 306 aaPredicted RBP19.15■□□□□ 0.66
VPS39-210ENST00000568357 CASP7P55210 303 aa19.14■□□□□ 0.65
VPS39-210ENST00000568357 CCDC152Q4G0S7 254 aa19.14■□□□□ 0.65
VPS39-210ENST00000568357 DPP8Q6V1X1 898 aaPredicted RBP19.14■□□□□ 0.65
VPS39-210ENST00000568357 TTLL11Q8NHH1 800 aa19.14■□□□□ 0.65
VPS39-210ENST00000568357 COL4A1P02462 1669 aa19.14■□□□□ 0.65
VPS39-210ENST00000568357 LBX1P52954 281 aa19.13■□□□□ 0.65
VPS39-210ENST00000568357 CTSWP56202 376 aa19.13■□□□□ 0.65
VPS39-210ENST00000568357 LARGE2Q8N3Y3 721 aa19.13■□□□□ 0.65
VPS39-210ENST00000568357 JDP2Q8WYK2 163 aa19.13■□□□□ 0.65
VPS39-210ENST00000568357 AIDAQ96BJ3 306 aa19.13■□□□□ 0.65
VPS39-210ENST00000568357 ABHD8Q96I13 439 aa19.13■□□□□ 0.65
VPS39-210ENST00000568357 ZNF541Q9H0D2 1346 aa19.13■□□□□ 0.65
VPS39-210ENST00000568357 COL4A5P29400 1685 aa19.12■□□□□ 0.65
VPS39-210ENST00000568357 PASKQ96RG2 1323 aa19.12■□□□□ 0.65
VPS39-210ENST00000568357 VEGFBP49765 207 aa19.12■□□□□ 0.65
VPS39-210ENST00000568357 AOC3Q16853 763 aa19.12■□□□□ 0.65
VPS39-210ENST00000568357 NSFL1CQ9UNZ2 370 aaKnown RBP19.12■□□□□ 0.65
VPS39-210ENST00000568357 PPIP5K2O43314 1243 aa19.11■□□□□ 0.65
VPS39-210ENST00000568357 GPSM2P81274 684 aa19.11■□□□□ 0.65
VPS39-210ENST00000568357 SLC4A10Q6U841 1118 aa19.11■□□□□ 0.65
VPS39-210ENST00000568357 SUPT20HQ8NEM7 779 aa19.11■□□□□ 0.65
VPS39-210ENST00000568357 PLA2G12BQ9BX93 195 aa19.11■□□□□ 0.65
VPS39-210ENST00000568357 BCL2L13Q9BXK5 485 aa19.11■□□□□ 0.65
VPS39-210ENST00000568357 VPS33BQ9H267 617 aa19.11■□□□□ 0.65
VPS39-210ENST00000568357 GREM2Q9H772 168 aa19.11■□□□□ 0.65
VPS39-210ENST00000568357 TAF1P21675 1872 aa19.11■□□□□ 0.65
VPS39-210ENST00000568357 POLLQ9UGP5 575 aa19.1■□□□□ 0.65
VPS39-210ENST00000568357 SCN4AP35499 1836 aa19.09■□□□□ 0.65
VPS39-210ENST00000568357 ALDH1L2Q3SY69 923 aa19.09■□□□□ 0.65
VPS39-210ENST00000568357 WBP1LQ9NX94 342 aa19.09■□□□□ 0.65
VPS39-210ENST00000568357 CSF1RP07333 972 aa19.08■□□□□ 0.64
VPS39-210ENST00000568357 HSPA8P11142 646 aaKnown RBP19.08■□□□□ 0.64
VPS39-210ENST00000568357 KIAA2012Q0VF49 1180 aa19.08■□□□□ 0.64
VPS39-210ENST00000568357 ANKRD18AQ8IVF6 992 aa19.08■□□□□ 0.64
VPS39-210ENST00000568357 NIM1KQ8IY84 436 aa19.08■□□□□ 0.64
VPS39-210ENST00000568357 L3MBTL3Q96JM7 780 aaPredicted RBP19.08■□□□□ 0.64
VPS39-210ENST00000568357 PCDH10Q9P2E7 1040 aa19.08■□□□□ 0.64
VPS39-210ENST00000568357 ADAMTSL1Q8N6G6 1762 aa19.08■□□□□ 0.64
VPS39-210ENST00000568357 CACNA1FO60840 1977 aa19.07■□□□□ 0.64
VPS39-210ENST00000568357 ALDH1L1O75891 902 aa19.07■□□□□ 0.64
VPS39-210ENST00000568357 CT47B1P0C2W7 299 aaPredicted RBP19.07■□□□□ 0.64
VPS39-210ENST00000568357 EIF6P56537 245 aaKnown RBP19.07■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 314.5 ms