RNA–Protein interactions for RNA: ENST00000567060.5

CLN6-208, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 2

Gene CLN6, Length 945 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-208ENST00000567060 SUSD4Q5VX71 490 aa21.14■□□□□ 0.97
CLN6-208ENST00000567060 SRCIN1Q9C0H9 1055 aa21.14■□□□□ 0.97
CLN6-208ENST00000567060 COL11A2P13942 1736 aaPredicted RBP21.13■□□□□ 0.97
CLN6-208ENST00000567060 SH3TC1Q8TE82 1336 aa21.13■□□□□ 0.97
CLN6-208ENST00000567060 F6X3S4 739 aa21.13■□□□□ 0.97
CLN6-208ENST00000567060 ATP5J2-PTCD1G3V325 749 aa21.13■□□□□ 0.97
CLN6-208ENST00000567060 IGKV5-2P06315 115 aa21.13■□□□□ 0.97
CLN6-208ENST00000567060 SRGNP10124 158 aa21.13■□□□□ 0.97
CLN6-208ENST00000567060 ZBTB38Q8NAP3 1195 aaPredicted RBP21.13■□□□□ 0.97
CLN6-208ENST00000567060 TAOK3Q9H2K8 898 aa21.13■□□□□ 0.97
CLN6-208ENST00000567060 TRMT112Q9UI30 125 aaKnown RBP21.13■□□□□ 0.97
CLN6-208ENST00000567060 ABCC4O15439 1325 aa21.12■□□□□ 0.97
CLN6-208ENST00000567060 PCCAP05165 728 aaPredicted RBP21.12■□□□□ 0.97
CLN6-208ENST00000567060 SLC10A5Q5PT55 438 aa21.12■□□□□ 0.97
CLN6-208ENST00000567060 FRAT1Q92837 279 aaPredicted RBP21.12■□□□□ 0.97
CLN6-208ENST00000567060 SLX4Q8IY92 1834 aa21.12■□□□□ 0.97
CLN6-208ENST00000567060 TRIM27P14373 513 aa21.11■□□□□ 0.97
CLN6-208ENST00000567060 GCKRQ14397 625 aa21.11■□□□□ 0.97
CLN6-208ENST00000567060 STYK1Q6J9G0 422 aa21.11■□□□□ 0.97
CLN6-208ENST00000567060 PRPF40BQ6NWY9 871 aaKnown RBP21.11■□□□□ 0.97
CLN6-208ENST00000567060 SLC4A10Q6U841 1118 aa21.11■□□□□ 0.97
CLN6-208ENST00000567060 C7orf43Q8WVR3 580 aa21.11■□□□□ 0.97
CLN6-208ENST00000567060 CNKSR1Q969H4 720 aa21.11■□□□□ 0.97
CLN6-208ENST00000567060 CDHR2Q9BYE9 1310 aa21.1■□□□□ 0.97
CLN6-208ENST00000567060 PASKQ96RG2 1323 aa21.09■□□□□ 0.97
CLN6-208ENST00000567060 KLRG2A4D1S0 409 aaPredicted RBP21.09■□□□□ 0.97
CLN6-208ENST00000567060 FOXN1O15353 648 aa21.09■□□□□ 0.97
CLN6-208ENST00000567060 CWF19L2Q2TBE0 894 aaKnown RBP21.09■□□□□ 0.97
CLN6-208ENST00000567060 INTS3Q68E01 1043 aaKnown RBP21.09■□□□□ 0.97
CLN6-208ENST00000567060 HDAC5Q9UQL6 1122 aa21.09■□□□□ 0.97
CLN6-208ENST00000567060 H7C1W4 665 aa21.08■□□□□ 0.97
CLN6-208ENST00000567060 MASTLQ96GX5 879 aa21.08■□□□□ 0.97
CLN6-208ENST00000567060 CNTNAP1P78357 1384 aa21.08■□□□□ 0.96
CLN6-208ENST00000567060 ITGBL1O95965 494 aaPredicted RBP21.07■□□□□ 0.96
CLN6-208ENST00000567060 FTSJ3Q8IY81 847 aaKnown RBP21.07■□□□□ 0.96
CLN6-208ENST00000567060 DZIP1LQ8IYY4 767 aaKnown RBP21.07■□□□□ 0.96
CLN6-208ENST00000567060 L3MBTL3Q96JM7 780 aaPredicted RBP21.07■□□□□ 0.96
CLN6-208ENST00000567060 TAF1DQ9H5J8 278 aaPredicted RBP21.07■□□□□ 0.96
CLN6-208ENST00000567060 LAMB2P55268 1798 aa21.07■□□□□ 0.96
CLN6-208ENST00000567060 UTYO14607 1347 aa21.06■□□□□ 0.96
CLN6-208ENST00000567060 FAM177BA6PVY3 158 aa21.06■□□□□ 0.96
CLN6-208ENST00000567060 GRM8O00222 908 aa21.06■□□□□ 0.96
CLN6-208ENST00000567060 PDE3AQ14432 1141 aa21.06■□□□□ 0.96
CLN6-208ENST00000567060 NLRP3Q96P20 1036 aa21.06■□□□□ 0.96
CLN6-208ENST00000567060 PLA2G12BQ9BX93 195 aa21.06■□□□□ 0.96
CLN6-208ENST00000567060 C9orf78Q9NZ63 289 aaPredicted RBP21.06■□□□□ 0.96
CLN6-208ENST00000567060 SOGA3Q5TF21 947 aa21.05■□□□□ 0.96
CLN6-208ENST00000567060 LDHDQ86WU2 507 aa21.05■□□□□ 0.96
CLN6-208ENST00000567060 NUTM1Q86Y26 1132 aa21.05■□□□□ 0.96
CLN6-208ENST00000567060 FAM89AQ96GI7 184 aa21.05■□□□□ 0.96
CLN6-208ENST00000567060 ABCC12Q96J65 1359 aa21.05■□□□□ 0.96
CLN6-208ENST00000567060 IRS4O14654 1257 aaPredicted RBP21.04■□□□□ 0.96
CLN6-208ENST00000567060 VEGFBP49765 207 aa21.04■□□□□ 0.96
CLN6-208ENST00000567060 CRY2Q49AN0 593 aa21.04■□□□□ 0.96
CLN6-208ENST00000567060 PRDM10Q9NQV6 1147 aa21.04■□□□□ 0.96
CLN6-208ENST00000567060 IQCA1LA6NCM1 817 aa21.03■□□□□ 0.96
CLN6-208ENST00000567060 PDE8AO60658 829 aa21.03■□□□□ 0.96
CLN6-208ENST00000567060 OLFM4Q6UX06 510 aa21.03■□□□□ 0.96
CLN6-208ENST00000567060 CHMP4BQ9H444 224 aaKnown RBP21.03■□□□□ 0.96
CLN6-208ENST00000567060 CASP7P55210 303 aa21.02■□□□□ 0.96
CLN6-208ENST00000567060 SF3B3Q15393 1217 aaKnown RBP21.02■□□□□ 0.96
CLN6-208ENST00000567060 UBE3BQ7Z3V4 1068 aa21.02■□□□□ 0.96
CLN6-208ENST00000567060 CACNA1SQ13698 1873 aa21.02■□□□□ 0.96
CLN6-208ENST00000567060 DDX60Q8IY21 1712 aaKnown RBP21.01■□□□□ 0.95
CLN6-208ENST00000567060 TMEM88BA6NKF7 163 aa21.01■□□□□ 0.95
CLN6-208ENST00000567060 NPR1P16066 1061 aa21.01■□□□□ 0.95
CLN6-208ENST00000567060 ZNF277Q9NRM2 450 aaPredicted RBP21.01■□□□□ 0.95
CLN6-208ENST00000567060 MYH3P11055 1940 aa21.01■□□□□ 0.95
CLN6-208ENST00000567060 ZNF541Q9H0D2 1346 aa21.01■□□□□ 0.95
CLN6-208ENST00000567060 SCN4AP35499 1836 aa21■□□□□ 0.95
CLN6-208ENST00000567060 GNAI3P08754 354 aa21■□□□□ 0.95
CLN6-208ENST00000567060 HOXA10P31260 410 aaPredicted RBP21■□□□□ 0.95
CLN6-208ENST00000567060 FKBP4Q02790 459 aaKnown RBP eCLIP21■□□□□ 0.95
CLN6-208ENST00000567060 CCDC93Q567U6 631 aa21■□□□□ 0.95
CLN6-208ENST00000567060 CLUAP1Q96AJ1 413 aa21■□□□□ 0.95
CLN6-208ENST00000567060 USP44Q9H0E7 712 aa21■□□□□ 0.95
CLN6-208ENST00000567060 WBP1LQ9NX94 342 aa21■□□□□ 0.95
CLN6-208ENST00000567060 ALDH1B1P30837 517 aa20.99■□□□□ 0.95
CLN6-208ENST00000567060 RRP1P56182 461 aaKnown RBP20.99■□□□□ 0.95
CLN6-208ENST00000567060 TMEM57Q8N5G2 664 aa20.99■□□□□ 0.95
CLN6-208ENST00000567060 RTL9Q8NET4 1388 aa20.98■□□□□ 0.95
CLN6-208ENST00000567060 HCLS1P14317 486 aaPredicted RBP20.98■□□□□ 0.95
CLN6-208ENST00000567060 CTCFP49711 727 aaPredicted RBP20.98■□□□□ 0.95
CLN6-208ENST00000567060 CCDC152Q4G0S7 254 aa20.98■□□□□ 0.95
CLN6-208ENST00000567060 EAPPQ56P03 285 aaPredicted RBP20.98■□□□□ 0.95
CLN6-208ENST00000567060 RPGRQ92834 1020 aaKnown RBP20.98■□□□□ 0.95
CLN6-208ENST00000567060 CRAMP1Q96RY5 1269 aa20.98■□□□□ 0.95
CLN6-208ENST00000567060 UBTFL1P0CB47 393 aaPredicted RBP20.97■□□□□ 0.95
CLN6-208ENST00000567060 CTSWP56202 376 aa20.97■□□□□ 0.95
CLN6-208ENST00000567060 SYNE4Q8N205 404 aa20.97■□□□□ 0.95
CLN6-208ENST00000567060 RBM17Q96I25 401 aaKnown RBP20.97■□□□□ 0.95
CLN6-208ENST00000567060 HACL1Q9UJ83 578 aa20.97■□□□□ 0.95
CLN6-208ENST00000567060 DDX19BQ9UMR2 479 aa20.97■□□□□ 0.95
CLN6-208ENST00000567060 FZD9O00144 591 aa20.96■□□□□ 0.95
CLN6-208ENST00000567060 NBPF7P0C2Y1 421 aaPredicted RBP20.96■□□□□ 0.95
CLN6-208ENST00000567060 EPHX2P34913 555 aa20.96■□□□□ 0.95
CLN6-208ENST00000567060 MVPQ14764 893 aaKnown RBP20.96■□□□□ 0.95
CLN6-208ENST00000567060 RTL5Q5HYW3 569 aaPredicted RBP20.96■□□□□ 0.95
CLN6-208ENST00000567060 ITPRIPQ8IWB1 547 aa20.96■□□□□ 0.95
CLN6-208ENST00000567060 CLEC11AQ9Y240 323 aa20.96■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms