RNA–Protein interactions for RNA: ENST00000566756.5

CMTM3-213, Transcript of CKLF like MARVEL transmembrane domain containing 3, humanhuman

TSL 2

Gene CMTM3, Length 1,950 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3-213ENST00000566756 SMC3Q9UQE7 1217 aa20.08■□□□□ 0.8
CMTM3-213ENST00000566756 ZKSCAN5Q9Y2L8 839 aa20.08■□□□□ 0.8
CMTM3-213ENST00000566756 NBPF26B4DH59 902 aa20.07■□□□□ 0.8
CMTM3-213ENST00000566756 NBPF14Q5TI25 921 aa20.07■□□□□ 0.8
CMTM3-213ENST00000566756 NBPF10Q6P3W6 841 aaKnown RBP20.07■□□□□ 0.8
CMTM3-213ENST00000566756 NBPF15Q8N660 670 aa20.07■□□□□ 0.8
CMTM3-213ENST00000566756 UBE2HP62256 183 aa20.06■□□□□ 0.8
CMTM3-213ENST00000566756 NECTIN1Q15223 517 aa20.06■□□□□ 0.8
CMTM3-213ENST00000566756 VPS72Q15906 364 aa20.06■□□□□ 0.8
CMTM3-213ENST00000566756 CCDC183Q5T5S1 534 aa20.06■□□□□ 0.8
CMTM3-213ENST00000566756 PLBD2Q8NHP8 589 aa20.06■□□□□ 0.8
CMTM3-213ENST00000566756 ASAP1Q9ULH1 1129 aa20.06■□□□□ 0.8
CMTM3-213ENST00000566756 AFDNP55196 1824 aaKnown RBP20.06■□□□□ 0.8
CMTM3-213ENST00000566756 NUP188Q5SRE5 1749 aa20.06■□□□□ 0.8
CMTM3-213ENST00000566756 F13A1P00488 732 aa20.06■□□□□ 0.8
CMTM3-213ENST00000566756 CASTP20810 708 aaKnown RBP20.06■□□□□ 0.8
CMTM3-213ENST00000566756 SYT1P21579 422 aa20.06■□□□□ 0.8
CMTM3-213ENST00000566756 CWF19L2Q2TBE0 894 aaKnown RBP20.06■□□□□ 0.8
CMTM3-213ENST00000566756 CYP46A1Q9Y6A2 500 aa20.06■□□□□ 0.8
CMTM3-213ENST00000566756 CCDC171Q6TFL3 1326 aa20.05■□□□□ 0.8
CMTM3-213ENST00000566756 IGKV5-2P06315 115 aa20.05■□□□□ 0.8
CMTM3-213ENST00000566756 NGLY1Q96IV0 654 aa20.05■□□□□ 0.8
CMTM3-213ENST00000566756 NEURL1BA8MQ27 555 aa20.04■□□□□ 0.8
CMTM3-213ENST00000566756 GADD45BO75293 160 aaPredicted RBP20.04■□□□□ 0.8
CMTM3-213ENST00000566756 ZKSCAN1P17029 563 aaPredicted RBP20.04■□□□□ 0.8
CMTM3-213ENST00000566756 PDRG1Q9NUG6 133 aa20.04■□□□□ 0.8
CMTM3-213ENST00000566756 EIF2AK3Q9NZJ5 1116 aaKnown RBP20.04■□□□□ 0.8
CMTM3-213ENST00000566756 RRP9O43818 475 aaKnown RBP20.04■□□□□ 0.8
CMTM3-213ENST00000566756 G3BP1Q13283 466 aaKnown RBP eCLIP20.04■□□□□ 0.8
CMTM3-213ENST00000566756 AACSQ86V21 672 aa20.04■□□□□ 0.8
CMTM3-213ENST00000566756 ALDH8A1Q9H2A2 487 aaPredicted RBP20.04■□□□□ 0.8
CMTM3-213ENST00000566756 PIP4K2AP48426 406 aaPredicted RBP20.03■□□□□ 0.8
CMTM3-213ENST00000566756 PTH1RQ03431 593 aa20.03■□□□□ 0.8
CMTM3-213ENST00000566756 MAP4K1Q92918 833 aa20.03■□□□□ 0.8
CMTM3-213ENST00000566756 KAZALD1Q96I82 304 aa20.03■□□□□ 0.8
CMTM3-213ENST00000566756 C8orf37Q96NL8 207 aa20.03■□□□□ 0.8
CMTM3-213ENST00000566756 CCDC9Q9Y3X0 531 aaKnown RBP20.03■□□□□ 0.8
CMTM3-213ENST00000566756 A1BGP04217 495 aa20.03■□□□□ 0.8
CMTM3-213ENST00000566756 PSMA5P28066 241 aa20.03■□□□□ 0.8
CMTM3-213ENST00000566756 GCKRQ14397 625 aa20.03■□□□□ 0.8
CMTM3-213ENST00000566756 SUCLG2Q96I99 432 aa20.03■□□□□ 0.8
CMTM3-213ENST00000566756 JAKMIP1Q96N16 626 aaKnown RBP20.03■□□□□ 0.8
CMTM3-213ENST00000566756 TCHHQ07283 1943 aa20.02■□□□□ 0.8
CMTM3-213ENST00000566756 SASH1O94885 1247 aa20.02■□□□□ 0.8
CMTM3-213ENST00000566756 MARCH10Q8NA82 808 aaPredicted RBP20.02■□□□□ 0.8
CMTM3-213ENST00000566756 MYD88Q99836 296 aa20.02■□□□□ 0.8
CMTM3-213ENST00000566756 COL15A1P39059 1388 aa20.02■□□□□ 0.8
CMTM3-213ENST00000566756 STARD3NLO95772 234 aa20.01■□□□□ 0.79
CMTM3-213ENST00000566756 PRPF40BQ6NWY9 871 aaKnown RBP20.01■□□□□ 0.79
CMTM3-213ENST00000566756 PA2G4Q9UQ80 394 aaKnown RBP20.01■□□□□ 0.79
CMTM3-213ENST00000566756 BICC1Q9H694 974 aaKnown RBP20.01■□□□□ 0.79
CMTM3-213ENST00000566756 GDPD2Q9HCC8 539 aa20.01■□□□□ 0.79
CMTM3-213ENST00000566756 CNPY2Q9Y2B0 182 aa20.01■□□□□ 0.79
CMTM3-213ENST00000566756 ANKRD1Q15327 319 aa20■□□□□ 0.79
CMTM3-213ENST00000566756 CREB3L3Q68CJ9 461 aa20■□□□□ 0.79
CMTM3-213ENST00000566756 EAF2Q96CJ1 260 aaPredicted RBP20■□□□□ 0.79
CMTM3-213ENST00000566756 MTMR6Q9Y217 621 aa20■□□□□ 0.79
CMTM3-213ENST00000566756 RBM8AQ9Y5S9 174 aaKnown RBP20■□□□□ 0.79
CMTM3-213ENST00000566756 TJP1Q07157 1748 aa20■□□□□ 0.79
CMTM3-213ENST00000566756 CICQ96RK0 1608 aaPredicted RBP20■□□□□ 0.79
CMTM3-213ENST00000566756 RFX7Q2KHR2 1363 aa19.99■□□□□ 0.79
CMTM3-213ENST00000566756 GJB2P29033 226 aa19.99■□□□□ 0.79
CMTM3-213ENST00000566756 ADCK5Q3MIX3 580 aa19.99■□□□□ 0.79
CMTM3-213ENST00000566756 RNF20Q5VTR2 975 aa19.99■□□□□ 0.79
CMTM3-213ENST00000566756 DNAJC10Q8IXB1 793 aa19.99■□□□□ 0.79
CMTM3-213ENST00000566756 MED23Q9ULK4 1368 aa19.99■□□□□ 0.79
CMTM3-213ENST00000566756 TSGA10IPQ3SY00 556 aa19.99■□□□□ 0.79
CMTM3-213ENST00000566756 LARGE1O95461 756 aa19.98■□□□□ 0.79
CMTM3-213ENST00000566756 RNF214Q8ND24 703 aa19.98■□□□□ 0.79
CMTM3-213ENST00000566756 SYTL4Q96C24 671 aaPredicted RBP19.98■□□□□ 0.79
CMTM3-213ENST00000566756 HMG20BQ9P0W2 317 aa19.98■□□□□ 0.79
CMTM3-213ENST00000566756 TTLL7Q6ZT98 887 aa19.97■□□□□ 0.79
CMTM3-213ENST00000566756 CCDC83Q8IWF9 413 aa19.97■□□□□ 0.79
CMTM3-213ENST00000566756 SLC4A9Q96Q91 983 aa19.97■□□□□ 0.79
CMTM3-213ENST00000566756 PDCP20941 246 aa19.97■□□□□ 0.79
CMTM3-213ENST00000566756 NMIQ13287 307 aaPredicted RBP19.97■□□□□ 0.79
CMTM3-213ENST00000566756 USP21Q9UK80 565 aa19.97■□□□□ 0.79
CMTM3-213ENST00000566756 SLC27A2O14975 620 aa19.96■□□□□ 0.79
CMTM3-213ENST00000566756 UBE2Q2Q8WVN8 375 aa19.96■□□□□ 0.79
CMTM3-213ENST00000566756 COPRSQ9NQ92 184 aa19.96■□□□□ 0.79
CMTM3-213ENST00000566756 THSD7AQ9UPZ6 1657 aa19.96■□□□□ 0.79
CMTM3-213ENST00000566756 CYP19A1P11511 503 aaPredicted RBP19.95■□□□□ 0.78
CMTM3-213ENST00000566756 HSPA1LP34931 641 aa19.95■□□□□ 0.78
CMTM3-213ENST00000566756 ME3Q16798 604 aa19.95■□□□□ 0.78
CMTM3-213ENST00000566756 FAM98CQ17RN3 349 aaKnown RBP19.95■□□□□ 0.78
CMTM3-213ENST00000566756 CPA1P15085 419 aa19.95■□□□□ 0.78
CMTM3-213ENST00000566756 ST3GAL1Q11201 340 aa19.95■□□□□ 0.78
CMTM3-213ENST00000566756 FOXD4L6Q3SYB3 417 aaPredicted RBP19.95■□□□□ 0.78
CMTM3-213ENST00000566756 FOXD4L3Q6VB84 417 aaPredicted RBP19.95■□□□□ 0.78
CMTM3-213ENST00000566756 ZNF831Q5JPB2 1677 aa19.95■□□□□ 0.78
CMTM3-213ENST00000566756 KCNJ4P48050 445 aa19.94■□□□□ 0.78
CMTM3-213ENST00000566756 HSP90AA2PQ14568 343 aaPredicted RBP19.94■□□□□ 0.78
CMTM3-213ENST00000566756 FAM227BQ96M60 508 aa19.94■□□□□ 0.78
CMTM3-213ENST00000566756 ELP1O95163 1332 aa19.94■□□□□ 0.78
CMTM3-213ENST00000566756 USPL1Q5W0Q7 1092 aa19.94■□□□□ 0.78
CMTM3-213ENST00000566756 TICAM2Q86XR7 235 aa19.94■□□□□ 0.78
CMTM3-213ENST00000566756 CCDC191Q8NCU4 936 aa19.94■□□□□ 0.78
CMTM3-213ENST00000566756 FUCA2Q9BTY2 467 aa19.94■□□□□ 0.78
CMTM3-213ENST00000566756 CASP7P55210 303 aa19.93■□□□□ 0.78
CMTM3-213ENST00000566756 KRT32Q14532 448 aa19.93■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms