RNA–Protein interactions for RNA: ENST00000565023.1

VPS9D1-204, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 5

Gene VPS9D1, Length 775 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-204ENST00000565023 CCDC85AQ96PX6 553 aaPredicted RBP17.48■□□□□ 0.39
VPS9D1-204ENST00000565023 CWC25Q9NXE8 425 aaPredicted RBP17.48■□□□□ 0.39
VPS9D1-204ENST00000565023 PPIP5K2O43314 1243 aa17.47■□□□□ 0.39
VPS9D1-204ENST00000565023 TRIM28Q13263 835 aaKnown RBP17.47■□□□□ 0.39
VPS9D1-204ENST00000565023 GJA3Q9Y6H8 435 aa17.47■□□□□ 0.39
VPS9D1-204ENST00000565023 CACNA1FO60840 1977 aa17.46■□□□□ 0.39
VPS9D1-204ENST00000565023 COL4A1P02462 1669 aa17.46■□□□□ 0.39
VPS9D1-204ENST00000565023 COL4A5P29400 1685 aa17.46■□□□□ 0.39
VPS9D1-204ENST00000565023 VAMP4O75379 141 aa17.46■□□□□ 0.39
VPS9D1-204ENST00000565023 BBOX1O75936 387 aa17.46■□□□□ 0.39
VPS9D1-204ENST00000565023 AOC3Q16853 763 aa17.46■□□□□ 0.39
VPS9D1-204ENST00000565023 DPP8Q6V1X1 898 aaPredicted RBP17.46■□□□□ 0.39
VPS9D1-204ENST00000565023 JMYQ8N9B5 988 aa17.46■□□□□ 0.39
VPS9D1-204ENST00000565023 ZBTB38Q8NAP3 1195 aaPredicted RBP17.46■□□□□ 0.39
VPS9D1-204ENST00000565023 CCDC191Q8NCU4 936 aa17.46■□□□□ 0.39
VPS9D1-204ENST00000565023 SMC1BQ8NDV3 1235 aa17.46■□□□□ 0.39
VPS9D1-204ENST00000565023 CELF1Q92879 486 aaKnown RBP17.46■□□□□ 0.39
VPS9D1-204ENST00000565023 MYH16Q9H6N6 1097 aa17.46■□□□□ 0.39
VPS9D1-204ENST00000565023 EIF6P56537 245 aaKnown RBP17.45■□□□□ 0.38
VPS9D1-204ENST00000565023 HTRA3P83110 453 aa17.45■□□□□ 0.38
VPS9D1-204ENST00000565023 NEXNQ0ZGT2 675 aa17.45■□□□□ 0.38
VPS9D1-204ENST00000565023 FLIIQ13045 1269 aa17.45■□□□□ 0.38
VPS9D1-204ENST00000565023 FKBP5Q13451 457 aaPredicted RBP17.45■□□□□ 0.38
VPS9D1-204ENST00000565023 CWF19L2Q2TBE0 894 aaKnown RBP17.45■□□□□ 0.38
VPS9D1-204ENST00000565023 SP8Q8IXZ3 490 aa17.45■□□□□ 0.38
VPS9D1-204ENST00000565023 MPNDQ8N594 471 aa17.45■□□□□ 0.38
VPS9D1-204ENST00000565023 CAPN15O75808 1086 aa17.44■□□□□ 0.38
VPS9D1-204ENST00000565023 PCCAP05165 728 aaPredicted RBP17.44■□□□□ 0.38
VPS9D1-204ENST00000565023 IGKV5-2P06315 115 aa17.44■□□□□ 0.38
VPS9D1-204ENST00000565023 POTEIP0CG38 1075 aa17.44■□□□□ 0.38
VPS9D1-204ENST00000565023 POTEJP0CG39 1038 aa17.44■□□□□ 0.38
VPS9D1-204ENST00000565023 FSTL1Q12841 308 aa17.44■□□□□ 0.38
VPS9D1-204ENST00000565023 SF3B3Q15393 1217 aaKnown RBP17.44■□□□□ 0.38
VPS9D1-204ENST00000565023 GRIPAP1Q4V328 841 aa17.44■□□□□ 0.38
VPS9D1-204ENST00000565023 NIM1KQ8IY84 436 aa17.44■□□□□ 0.38
VPS9D1-204ENST00000565023 SEC31BQ9NQW1 1179 aa17.44■□□□□ 0.38
VPS9D1-204ENST00000565023 SCN4AP35499 1836 aa17.43■□□□□ 0.38
VPS9D1-204ENST00000565023 FZD9O00144 591 aa17.43■□□□□ 0.38
VPS9D1-204ENST00000565023 EAPPQ56P03 285 aaPredicted RBP17.43■□□□□ 0.38
VPS9D1-204ENST00000565023 MYH3P11055 1940 aa17.43■□□□□ 0.38
VPS9D1-204ENST00000565023 SPEF2Q9C093 1822 aa17.42■□□□□ 0.38
VPS9D1-204ENST00000565023 PDE8AO60658 829 aa17.42■□□□□ 0.38
VPS9D1-204ENST00000565023 SUPT20HQ8NEM7 779 aa17.42■□□□□ 0.38
VPS9D1-204ENST00000565023 IQCA1LA6NCM1 817 aa17.41■□□□□ 0.38
VPS9D1-204ENST00000565023 NEURL1BA8MQ27 555 aa17.41■□□□□ 0.38
VPS9D1-204ENST00000565023 KLRG1Q96E93 195 aa17.41■□□□□ 0.38
VPS9D1-204ENST00000565023 HACL1Q9UJ83 578 aa17.41■□□□□ 0.38
VPS9D1-204ENST00000565023 NSFL1CQ9UNZ2 370 aaKnown RBP17.41■□□□□ 0.38
VPS9D1-204ENST00000565023 LRRC37AA6NMS7 1700 aa17.41■□□□□ 0.38
VPS9D1-204ENST00000565023 F6X3S4 739 aa17.4■□□□□ 0.38
VPS9D1-204ENST00000565023 SLC34A2O95436 690 aa17.4■□□□□ 0.38
VPS9D1-204ENST00000565023 HSP90B1P14625 803 aaKnown RBP17.4■□□□□ 0.38
VPS9D1-204ENST00000565023 RPS8P62241 208 aaKnown RBP17.4■□□□□ 0.38
VPS9D1-204ENST00000565023 CCDC152Q4G0S7 254 aa17.4■□□□□ 0.38
VPS9D1-204ENST00000565023 UBE3BQ7Z3V4 1068 aa17.4■□□□□ 0.38
VPS9D1-204ENST00000565023 TNS4Q8IZW8 715 aa17.4■□□□□ 0.38
VPS9D1-204ENST00000565023 DNAAF4Q8WXU2 420 aa17.4■□□□□ 0.38
VPS9D1-204ENST00000565023 TAF1DQ9H5J8 278 aaPredicted RBP17.4■□□□□ 0.38
VPS9D1-204ENST00000565023 CLEC11AQ9Y240 323 aa17.4■□□□□ 0.38
VPS9D1-204ENST00000565023 C6orf229H3BNL8 230 aa17.39■□□□□ 0.37
VPS9D1-204ENST00000565023 RIMBP2O15034 1052 aa17.39■□□□□ 0.37
VPS9D1-204ENST00000565023 EPHX2P34913 555 aa17.39■□□□□ 0.37
VPS9D1-204ENST00000565023 GPSM2P81274 684 aa17.39■□□□□ 0.37
VPS9D1-204ENST00000565023 TMC4Q7Z404 712 aa17.39■□□□□ 0.37
VPS9D1-204ENST00000565023 GPC2Q8N158 579 aa17.39■□□□□ 0.37
VPS9D1-204ENST00000565023 L3MBTL3Q96JM7 780 aaPredicted RBP17.39■□□□□ 0.37
VPS9D1-204ENST00000565023 GPR101Q96P66 508 aaPredicted RBP17.39■□□□□ 0.37
VPS9D1-204ENST00000565023 ZNF521Q96K83 1311 aa17.39■□□□□ 0.37
VPS9D1-204ENST00000565023 DUOX1Q9NRD9 1551 aa17.38■□□□□ 0.37
VPS9D1-204ENST00000565023 LMOD1P29536 600 aaPredicted RBP17.38■□□□□ 0.37
VPS9D1-204ENST00000565023 CHADLQ6NUI6 762 aa17.38■□□□□ 0.37
VPS9D1-204ENST00000565023 RTFDC1Q9BY42 306 aaPredicted RBP17.38■□□□□ 0.37
VPS9D1-204ENST00000565023 CDHR2Q9BYE9 1310 aa17.38■□□□□ 0.37
VPS9D1-204ENST00000565023 RAD17O75943 681 aa17.37■□□□□ 0.37
VPS9D1-204ENST00000565023 CTSWP56202 376 aa17.37■□□□□ 0.37
VPS9D1-204ENST00000565023 ZNRF3Q9ULT6 936 aa17.37■□□□□ 0.37
VPS9D1-204ENST00000565023 LTBP1Q14766 1721 aa17.36■□□□□ 0.37
VPS9D1-204ENST00000565023 KIAA2012Q0VF49 1180 aa17.36■□□□□ 0.37
VPS9D1-204ENST00000565023 GCKRQ14397 625 aa17.36■□□□□ 0.37
VPS9D1-204ENST00000565023 ANKRD18AQ8IVF6 992 aa17.36■□□□□ 0.37
VPS9D1-204ENST00000565023 ANKIB1Q9P2G1 1089 aa17.36■□□□□ 0.37
VPS9D1-204ENST00000565023 EPS15P42566 896 aa17.35■□□□□ 0.37
VPS9D1-204ENST00000565023 CXCL9Q07325 125 aa17.35■□□□□ 0.37
VPS9D1-204ENST00000565023 WASHC4Q2M389 1173 aa17.35■□□□□ 0.37
VPS9D1-204ENST00000565023 SLC4A10Q6U841 1118 aa17.35■□□□□ 0.37
VPS9D1-204ENST00000565023 LDHDQ86WU2 507 aa17.35■□□□□ 0.37
VPS9D1-204ENST00000565023 LINS1Q8NG48 757 aa17.35■□□□□ 0.37
VPS9D1-204ENST00000565023 CDCA7LQ96GN5 454 aa17.35■□□□□ 0.37
VPS9D1-204ENST00000565023 VPS33BQ9H267 617 aa17.35■□□□□ 0.37
VPS9D1-204ENST00000565023 GREM2Q9H772 168 aa17.35■□□□□ 0.37
VPS9D1-204ENST00000565023 DBNDD1Q9H9R9 158 aa17.35■□□□□ 0.37
VPS9D1-204ENST00000565023 POLLQ9UGP5 575 aa17.35■□□□□ 0.37
VPS9D1-204ENST00000565023 H7C1W4 665 aa17.34■□□□□ 0.37
VPS9D1-204ENST00000565023 SCNN1DP51172 638 aa17.34■□□□□ 0.37
VPS9D1-204ENST00000565023 DOK7Q18PE1 504 aa17.34■□□□□ 0.37
VPS9D1-204ENST00000565023 CIAPIN1Q6FI81 312 aa17.34■□□□□ 0.37
VPS9D1-204ENST00000565023 TTLL11Q8NHH1 800 aa17.34■□□□□ 0.37
VPS9D1-204ENST00000565023 E9PSI1 815 aa17.33■□□□□ 0.36
VPS9D1-204ENST00000565023 UFL1O94874 794 aa17.33■□□□□ 0.36
VPS9D1-204ENST00000565023 TBC1D16Q8TBP0 767 aa17.33■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms