RNA–Protein interactions for RNA: ENST00000563739.5

SF3B3-204, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,105 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-204ENST00000563739 MYL6BP14649 208 aa13.85□□□□□ -0.19
SF3B3-204ENST00000563739 GTF2E1P29083 439 aaPredicted RBP13.85□□□□□ -0.19
SF3B3-204ENST00000563739 U2AF1Q01081 240 aaKnown RBP eCLIP13.85□□□□□ -0.19
SF3B3-204ENST00000563739 DGKZQ13574 1117 aa13.85□□□□□ -0.19
SF3B3-204ENST00000563739 GRIPAP1Q4V328 841 aa13.85□□□□□ -0.19
SF3B3-204ENST00000563739 SLC10A5Q5PT55 438 aa13.85□□□□□ -0.19
SF3B3-204ENST00000563739 RBM17Q96I25 401 aaKnown RBP13.85□□□□□ -0.19
SF3B3-204ENST00000563739 RRP7AQ9Y3A4 280 aaKnown RBP13.85□□□□□ -0.19
SF3B3-204ENST00000563739 AKAP11Q9UKA4 1901 aa13.85□□□□□ -0.19
SF3B3-204ENST00000563739 CA12O43570 354 aa13.84□□□□□ -0.19
SF3B3-204ENST00000563739 RAD17O75943 681 aa13.84□□□□□ -0.19
SF3B3-204ENST00000563739 RTF1Q92541 710 aaKnown RBP13.84□□□□□ -0.19
SF3B3-204ENST00000563739 PLEKHF1Q96S99 279 aa13.84□□□□□ -0.19
SF3B3-204ENST00000563739 BEGAINQ9BUH8 593 aa13.84□□□□□ -0.19
SF3B3-204ENST00000563739 RTL9Q8NET4 1388 aa13.83□□□□□ -0.19
SF3B3-204ENST00000563739 ANXA1P04083 346 aa13.83□□□□□ -0.2
SF3B3-204ENST00000563739 VPS33BQ9H267 617 aa13.83□□□□□ -0.2
SF3B3-204ENST00000563739 KIF6Q6ZMV9 814 aa13.82□□□□□ -0.2
SF3B3-204ENST00000563739 ZC3H15Q8WU90 426 aaKnown RBP13.82□□□□□ -0.2
SF3B3-204ENST00000563739 ZNF408Q9H9D4 720 aa13.82□□□□□ -0.2
SF3B3-204ENST00000563739 ZBTB12Q9Y330 459 aaPredicted RBP13.82□□□□□ -0.2
SF3B3-204ENST00000563739 ERBB4Q15303 1308 aa13.82□□□□□ -0.2
SF3B3-204ENST00000563739 ADM5C9JUS6 153 aa13.81□□□□□ -0.2
SF3B3-204ENST00000563739 SOX10P56693 466 aa13.81□□□□□ -0.2
SF3B3-204ENST00000563739 USP48Q86UV5 1035 aa13.81□□□□□ -0.2
SF3B3-204ENST00000563739 MKI67P46013 3256 aaKnown RBP13.81□□□□□ -0.2
SF3B3-204ENST00000563739 ASTN2O75129 1339 aaPredicted RBP13.81□□□□□ -0.2
SF3B3-204ENST00000563739 HCLS1P14317 486 aaPredicted RBP13.8□□□□□ -0.2
SF3B3-204ENST00000563739 HUNKP57058 714 aa13.8□□□□□ -0.2
SF3B3-204ENST00000563739 NOGQ13253 232 aa13.8□□□□□ -0.2
SF3B3-204ENST00000563739 PARP10Q53GL7 1025 aa13.8□□□□□ -0.2
SF3B3-204ENST00000563739 DPP8Q6V1X1 898 aaPredicted RBP13.8□□□□□ -0.2
SF3B3-204ENST00000563739 CDC37L1Q7L3B6 337 aa13.8□□□□□ -0.2
SF3B3-204ENST00000563739 SAMD7Q7Z3H4 446 aa13.8□□□□□ -0.2
SF3B3-204ENST00000563739 SP8Q8IXZ3 490 aa13.8□□□□□ -0.2
SF3B3-204ENST00000563739 MICALL2Q8IY33 904 aa13.8□□□□□ -0.2
SF3B3-204ENST00000563739 CFAP53Q96M91 514 aa13.8□□□□□ -0.2
SF3B3-204ENST00000563739 KCNQ5Q9NR82 932 aa13.8□□□□□ -0.2
SF3B3-204ENST00000563739 CNOT7Q9UIV1 285 aaKnown RBP13.8□□□□□ -0.2
SF3B3-204ENST00000563739 NLRP10Q86W26 655 aa13.79□□□□□ -0.2
SF3B3-204ENST00000563739 NLRP3Q96P20 1036 aa13.79□□□□□ -0.2
SF3B3-204ENST00000563739 PAPPA2Q9BXP8 1791 aa13.78□□□□□ -0.2
SF3B3-204ENST00000563739 PSMD14O00487 310 aa13.78□□□□□ -0.2
SF3B3-204ENST00000563739 KIF23Q02241 960 aaPredicted RBP13.78□□□□□ -0.2
SF3B3-204ENST00000563739 GRAPQ13588 217 aa13.78□□□□□ -0.2
SF3B3-204ENST00000563739 PPP1R42Q7Z4L9 355 aa13.78□□□□□ -0.2
SF3B3-204ENST00000563739 MPNDQ8N594 471 aa13.78□□□□□ -0.2
SF3B3-204ENST00000563739 GRAPLQ8TC17 118 aaPredicted RBP13.78□□□□□ -0.2
SF3B3-204ENST00000563739 CFAP44Q96MT7 982 aa13.78□□□□□ -0.2
SF3B3-204ENST00000563739 UTP14AQ9BVJ6 771 aaKnown RBP13.78□□□□□ -0.2
SF3B3-204ENST00000563739 SAGE1Q9NXZ1 904 aa13.78□□□□□ -0.2
SF3B3-204ENST00000563739 NUDCQ9Y266 331 aa13.78□□□□□ -0.2
SF3B3-204ENST00000563739 ZNF609O15014 1411 aa13.78□□□□□ -0.2
SF3B3-204ENST00000563739 LAMB1P07942 1786 aa13.78□□□□□ -0.2
SF3B3-204ENST00000563739 SLC10A3P09131 477 aa13.77□□□□□ -0.21
SF3B3-204ENST00000563739 NFE2L2Q16236 605 aa13.77□□□□□ -0.21
SF3B3-204ENST00000563739 TBC1D10BQ4KMP7 808 aaPredicted RBP13.77□□□□□ -0.21
SF3B3-204ENST00000563739 RGMBQ6NW40 437 aa13.77□□□□□ -0.21
SF3B3-204ENST00000563739 SUPT20HQ8NEM7 779 aa13.77□□□□□ -0.21
SF3B3-204ENST00000563739 PNISRQ8TF01 805 aaKnown RBP13.77□□□□□ -0.21
SF3B3-204ENST00000563739 GBA2Q9HCG7 927 aaPredicted RBP13.77□□□□□ -0.21
SF3B3-204ENST00000563739 RNF186Q9NXI6 227 aa13.77□□□□□ -0.21
SF3B3-204ENST00000563739 BRCA2P51587 3418 aa13.77□□□□□ -0.21
SF3B3-204ENST00000563739 BBOX1O75936 387 aa13.76□□□□□ -0.21
SF3B3-204ENST00000563739 DPF2Q92785 391 aa13.76□□□□□ -0.21
SF3B3-204ENST00000563739 CELF1Q92879 486 aaKnown RBP13.76□□□□□ -0.21
SF3B3-204ENST00000563739 ZNF428Q96B54 188 aa13.76□□□□□ -0.21
SF3B3-204ENST00000563739 BCL2L13Q9BXK5 485 aa13.76□□□□□ -0.21
SF3B3-204ENST00000563739 DBNDD1Q9H9R9 158 aa13.76□□□□□ -0.21
SF3B3-204ENST00000563739 POLLQ9UGP5 575 aa13.76□□□□□ -0.21
SF3B3-204ENST00000563739 TNIP1Q15025 636 aa13.75□□□□□ -0.21
SF3B3-204ENST00000563739 KRT24Q2M2I5 525 aa13.75□□□□□ -0.21
SF3B3-204ENST00000563739 NCBP3Q53F19 620 aaKnown RBP13.75□□□□□ -0.21
SF3B3-204ENST00000563739 CSRNP1Q96S65 589 aa13.75□□□□□ -0.21
SF3B3-204ENST00000563739 TRPA1O75762 1119 aa13.74□□□□□ -0.21
SF3B3-204ENST00000563739 KRT26Q7Z3Y9 468 aa13.74□□□□□ -0.21
SF3B3-204ENST00000563739 RASAL3Q86YV0 1011 aa13.74□□□□□ -0.21
SF3B3-204ENST00000563739 XAGE3Q8WTP9 111 aa13.74□□□□□ -0.21
SF3B3-204ENST00000563739 CENPFP49454 3210 aa13.73□□□□□ -0.21
SF3B3-204ENST00000563739 GPSM2P81274 684 aa13.73□□□□□ -0.21
SF3B3-204ENST00000563739 TCIRG1Q13488 830 aa13.73□□□□□ -0.21
SF3B3-204ENST00000563739 PRPF38BQ5VTL8 546 aaKnown RBP13.73□□□□□ -0.21
SF3B3-204ENST00000563739 COPS6Q7L5N1 327 aa13.73□□□□□ -0.21
SF3B3-204ENST00000563739 GGA3Q9NZ52 723 aa13.73□□□□□ -0.21
SF3B3-204ENST00000563739 RBBP6Q7Z6E9 1792 aaKnown RBP13.73□□□□□ -0.21
SF3B3-204ENST00000563739 SH3TC1Q8TE82 1336 aa13.72□□□□□ -0.21
SF3B3-204ENST00000563739 SPEF2Q9C093 1822 aa13.72□□□□□ -0.21
SF3B3-204ENST00000563739 ECE2O60344 883 aa13.72□□□□□ -0.21
SF3B3-204ENST00000563739 CCER1Q8TC90 406 aaPredicted RBP13.72□□□□□ -0.21
SF3B3-204ENST00000563739 CDCA5Q96FF9 252 aa13.72□□□□□ -0.21
SF3B3-204ENST00000563739 H7C1D1 291 aa13.71□□□□□ -0.21
SF3B3-204ENST00000563739 EIF2S2P20042 333 aaKnown RBP13.71□□□□□ -0.21
SF3B3-204ENST00000563739 SF3B3Q15393 1217 aaKnown RBP13.71□□□□□ -0.21
SF3B3-204ENST00000563739 DOK7Q18PE1 504 aa13.71□□□□□ -0.21
SF3B3-204ENST00000563739 DDX46Q7L014 1031 aaKnown RBP13.71□□□□□ -0.21
SF3B3-204ENST00000563739 CTU1Q7Z7A3 348 aaKnown RBP13.71□□□□□ -0.21
SF3B3-204ENST00000563739 ISCA1Q9BUE6 129 aa13.71□□□□□ -0.21
SF3B3-204ENST00000563739 TSPYL4Q9UJ04 414 aa13.71□□□□□ -0.21
SF3B3-204ENST00000563739 HPS5Q9UPZ3 1129 aa13.71□□□□□ -0.21
SF3B3-204ENST00000563739 RIMBP2O15034 1052 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms