RNA–Protein interactions for RNA: ENST00000563448.1

SMG1-208, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 2

Gene SMG1, Length 2,016 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-208ENST00000563448 COPRSQ9NQ92 184 aa12.61□□□□□ -0.39
SMG1-208ENST00000563448 STK32BQ9NY57 414 aa12.61□□□□□ -0.39
SMG1-208ENST00000563448 CARMIL3Q8ND23 1372 aa12.6□□□□□ -0.39
SMG1-208ENST00000563448 RAB11FIP3O75154 756 aa12.6□□□□□ -0.39
SMG1-208ENST00000563448 TM4SF1P30408 202 aa12.6□□□□□ -0.39
SMG1-208ENST00000563448 CCDC85AQ96PX6 553 aaPredicted RBP12.6□□□□□ -0.39
SMG1-208ENST00000563448 NYXQ9GZU5 481 aa12.6□□□□□ -0.39
SMG1-208ENST00000563448 ABCC12Q96J65 1359 aa12.59□□□□□ -0.39
SMG1-208ENST00000563448 MSH5O43196 834 aa12.59□□□□□ -0.39
SMG1-208ENST00000563448 FAM161AQ3B820 660 aa12.59□□□□□ -0.39
SMG1-208ENST00000563448 NBPF5PQ86XG9 351 aaPredicted RBP12.59□□□□□ -0.39
SMG1-208ENST00000563448 LRRCC1Q9C099 1032 aa12.59□□□□□ -0.39
SMG1-208ENST00000563448 COL4A1P02462 1669 aa12.59□□□□□ -0.39
SMG1-208ENST00000563448 HSP90AB4PQ58FF6 505 aa12.59□□□□□ -0.39
SMG1-208ENST00000563448 SLC10A5Q5PT55 438 aa12.59□□□□□ -0.39
SMG1-208ENST00000563448 C16orf71Q8IYS4 520 aaPredicted RBP12.59□□□□□ -0.39
SMG1-208ENST00000563448 RHPN1Q8TCX5 695 aa12.59□□□□□ -0.39
SMG1-208ENST00000563448 ZNF594Q96JF6 807 aaPredicted RBP12.59□□□□□ -0.39
SMG1-208ENST00000563448 SIL1Q9H173 461 aa12.59□□□□□ -0.39
SMG1-208ENST00000563448 AK9Q5TCS8 1911 aa12.59□□□□□ -0.39
SMG1-208ENST00000563448 TPTE2Q6XPS3 522 aa12.58□□□□□ -0.4
SMG1-208ENST00000563448 GREM2Q9H772 168 aa12.58□□□□□ -0.4
SMG1-208ENST00000563448 LRP5O75197 1615 aa12.58□□□□□ -0.4
SMG1-208ENST00000563448 SASH1O94885 1247 aa12.57□□□□□ -0.4
SMG1-208ENST00000563448 GTF2E1P29083 439 aaPredicted RBP12.57□□□□□ -0.4
SMG1-208ENST00000563448 DDR1Q08345 913 aa12.57□□□□□ -0.4
SMG1-208ENST00000563448 G3BP1Q13283 466 aaKnown RBP eCLIP12.57□□□□□ -0.4
SMG1-208ENST00000563448 OS9Q13438 667 aaPredicted RBP12.57□□□□□ -0.4
SMG1-208ENST00000563448 CCDC57Q2TAC2 916 aa12.57□□□□□ -0.4
SMG1-208ENST00000563448 UPF1Q92900 1129 aaKnown RBP eCLIP12.57□□□□□ -0.4
SMG1-208ENST00000563448 KIF1BPQ96EK5 621 aa12.57□□□□□ -0.4
SMG1-208ENST00000563448 POLRMTO00411 1230 aaKnown RBP12.57□□□□□ -0.4
SMG1-208ENST00000563448 HSP90B1P14625 803 aaKnown RBP12.57□□□□□ -0.4
SMG1-208ENST00000563448 ITGA6P23229 1130 aa12.57□□□□□ -0.4
SMG1-208ENST00000563448 IFIT5Q13325 482 aaKnown RBP12.57□□□□□ -0.4
SMG1-208ENST00000563448 C3orf67Q6ZVT6 689 aa12.57□□□□□ -0.4
SMG1-208ENST00000563448 NLGN1Q8N2Q7 840 aa12.57□□□□□ -0.4
SMG1-208ENST00000563448 CCDC24Q8N4L8 307 aa12.57□□□□□ -0.4
SMG1-208ENST00000563448 BCL11AQ9H165 835 aa12.57□□□□□ -0.4
SMG1-208ENST00000563448 ZBTB47Q9UFB7 747 aaPredicted RBP12.57□□□□□ -0.4
SMG1-208ENST00000563448 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.57□□□□□ -0.4
SMG1-208ENST00000563448 SERPINB2P05120 415 aa12.56□□□□□ -0.4
SMG1-208ENST00000563448 PRR5LQ6MZQ0 368 aa12.56□□□□□ -0.4
SMG1-208ENST00000563448 ERC1Q8IUD2 1116 aa12.56□□□□□ -0.4
SMG1-208ENST00000563448 OTUD7AQ8TE49 926 aaPredicted RBP12.56□□□□□ -0.4
SMG1-208ENST00000563448 IL1RAPL2Q9NP60 686 aa12.56□□□□□ -0.4
SMG1-208ENST00000563448 CACNA1SQ13698 1873 aa12.56□□□□□ -0.4
SMG1-208ENST00000563448 ANKRD18BA2A2Z9 1011 aa12.55□□□□□ -0.4
SMG1-208ENST00000563448 ATG9AQ7Z3C6 839 aa12.55□□□□□ -0.4
SMG1-208ENST00000563448 PLEKHM2Q8IWE5 1019 aa12.55□□□□□ -0.4
SMG1-208ENST00000563448 PUS3Q9BZE2 481 aaKnown RBP12.55□□□□□ -0.4
SMG1-208ENST00000563448 SALL3Q9BXA9 1300 aa12.55□□□□□ -0.4
SMG1-208ENST00000563448 RTL9Q8NET4 1388 aa12.55□□□□□ -0.4
SMG1-208ENST00000563448 EYA2O00167 538 aa12.55□□□□□ -0.4
SMG1-208ENST00000563448 SF3B3Q15393 1217 aaKnown RBP12.55□□□□□ -0.4
SMG1-208ENST00000563448 CCDC152Q4G0S7 254 aa12.55□□□□□ -0.4
SMG1-208ENST00000563448 LRRC24Q50LG9 513 aa12.55□□□□□ -0.4
SMG1-208ENST00000563448 CNBD1Q8NA66 436 aa12.55□□□□□ -0.4
SMG1-208ENST00000563448 SEC31BQ9NQW1 1179 aa12.55□□□□□ -0.4
SMG1-208ENST00000563448 RIC1Q4ADV7 1423 aa12.55□□□□□ -0.4
SMG1-208ENST00000563448 CIAO1O76071 339 aa12.54□□□□□ -0.4
SMG1-208ENST00000563448 COL11A2P13942 1736 aaPredicted RBP12.54□□□□□ -0.4
SMG1-208ENST00000563448 ARAP2Q8WZ64 1704 aa12.54□□□□□ -0.4
SMG1-208ENST00000563448 TFCP2Q12800 502 aa12.54□□□□□ -0.4
SMG1-208ENST00000563448 TAF7LQ5H9L4 462 aa12.54□□□□□ -0.4
SMG1-208ENST00000563448 MSL1Q68DK7 614 aa12.54□□□□□ -0.4
SMG1-208ENST00000563448 NLRP3Q96P20 1036 aa12.54□□□□□ -0.4
SMG1-208ENST00000563448 PDGFDQ9GZP0 370 aaPredicted RBP12.54□□□□□ -0.4
SMG1-208ENST00000563448 FBXO3Q9UK99 471 aa12.54□□□□□ -0.4
SMG1-208ENST00000563448 NPHP1O15259 732 aa12.53□□□□□ -0.4
SMG1-208ENST00000563448 IL15P40933 162 aaPredicted RBP12.53□□□□□ -0.4
SMG1-208ENST00000563448 CLASRPQ8N2M8 674 aaKnown RBP12.52□□□□□ -0.4
SMG1-208ENST00000563448 MMP10P09238 476 aa12.52□□□□□ -0.41
SMG1-208ENST00000563448 ST5P78524 1137 aa12.52□□□□□ -0.41
SMG1-208ENST00000563448 LDHAL6AQ6ZMR3 332 aa12.52□□□□□ -0.41
SMG1-208ENST00000563448 EAF2Q96CJ1 260 aaPredicted RBP12.52□□□□□ -0.41
SMG1-208ENST00000563448 RIPOR2Q9Y4F9 1068 aa12.52□□□□□ -0.41
SMG1-208ENST00000563448 PDE1AP54750 535 aa12.51□□□□□ -0.41
SMG1-208ENST00000563448 OSBPL3Q9H4L5 887 aa12.51□□□□□ -0.41
SMG1-208ENST00000563448 PARP3Q9Y6F1 533 aa12.51□□□□□ -0.41
SMG1-208ENST00000563448 KIF13BQ9NQT8 1826 aa12.51□□□□□ -0.41
SMG1-208ENST00000563448 MX1P20591 662 aa12.5□□□□□ -0.41
SMG1-208ENST00000563448 TNNI3KQ59H18 835 aa12.5□□□□□ -0.41
SMG1-208ENST00000563448 AACSQ86V21 672 aa12.5□□□□□ -0.41
SMG1-208ENST00000563448 STAP2Q9UGK3 403 aa12.5□□□□□ -0.41
SMG1-208ENST00000563448 FPGT-TNNI3KV9GXZ4 949 aa12.5□□□□□ -0.41
SMG1-208ENST00000563448 CELF1Q92879 486 aaKnown RBP12.5□□□□□ -0.41
SMG1-208ENST00000563448 CDC5LQ99459 802 aaKnown RBP12.5□□□□□ -0.41
SMG1-208ENST00000563448 CCDC8Q9H0W5 538 aaPredicted RBP12.5□□□□□ -0.41
SMG1-208ENST00000563448 CNNM1Q9NRU3 951 aa12.5□□□□□ -0.41
SMG1-208ENST00000563448 ZNF609O15014 1411 aa12.5□□□□□ -0.41
SMG1-208ENST00000563448 IGHMBP2P38935 993 aaKnown RBP12.49□□□□□ -0.41
SMG1-208ENST00000563448 TTC22Q5TAA0 569 aa12.49□□□□□ -0.41
SMG1-208ENST00000563448 TSHZ3Q63HK5 1081 aa12.49□□□□□ -0.41
SMG1-208ENST00000563448 GPR108Q9NPR9 543 aa12.49□□□□□ -0.41
SMG1-208ENST00000563448 TLR7Q9NYK1 1049 aaKnown RBP12.49□□□□□ -0.41
SMG1-208ENST00000563448 CEP126Q9P2H0 1117 aa12.49□□□□□ -0.41
SMG1-208ENST00000563448 DLEC1Q9Y238 1755 aa12.49□□□□□ -0.41
SMG1-208ENST00000563448 LRRC37AA6NMS7 1700 aa12.49□□□□□ -0.41
SMG1-208ENST00000563448 AKAP11Q9UKA4 1901 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms