RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 USP5P45974 858 aa6.22□□□□□ -1.41
VPS35-203ENST00000562420 ZNF211Q13398 564 aaPredicted RBP6.22□□□□□ -1.41
VPS35-203ENST00000562420 PCSK7Q16549 785 aa6.22□□□□□ -1.41
VPS35-203ENST00000562420 ELOA3BQ3SY89 546 aa6.22□□□□□ -1.41
VPS35-203ENST00000562420 PDE12Q6L8Q7 609 aaKnown RBP6.22□□□□□ -1.41
VPS35-203ENST00000562420 XKR5Q6UX68 686 aa6.22□□□□□ -1.41
VPS35-203ENST00000562420 RGL4Q8IZJ4 473 aa6.22□□□□□ -1.41
VPS35-203ENST00000562420 ELOA3Q8NG57 546 aa6.22□□□□□ -1.41
VPS35-203ENST00000562420 PNMA5Q96PV4 448 aa6.22□□□□□ -1.41
VPS35-203ENST00000562420 GTF3C5Q9Y5Q8 519 aaPredicted RBP6.22□□□□□ -1.41
VPS35-203ENST00000562420 SOWAHDA6NJG2 315 aa6.21□□□□□ -1.42
VPS35-203ENST00000562420 NEURL1BA8MQ27 555 aa6.21□□□□□ -1.42
VPS35-203ENST00000562420 H3BRB1 525 aa6.21□□□□□ -1.42
VPS35-203ENST00000562420 EHHADHQ08426 723 aa6.21□□□□□ -1.42
VPS35-203ENST00000562420 GRIN2CQ14957 1233 aa6.21□□□□□ -1.42
VPS35-203ENST00000562420 TRIP4Q15650 581 aaPredicted RBP6.21□□□□□ -1.42
VPS35-203ENST00000562420 ECM1Q16610 540 aa6.21□□□□□ -1.42
VPS35-203ENST00000562420 NLRP13Q86W25 1043 aa6.21□□□□□ -1.42
VPS35-203ENST00000562420 GLYCTKQ8IVS8 523 aa6.21□□□□□ -1.42
VPS35-203ENST00000562420 NEDD1Q8NHV4 660 aa6.21□□□□□ -1.42
VPS35-203ENST00000562420 EDARADDQ8WWZ3 215 aa6.21□□□□□ -1.42
VPS35-203ENST00000562420 SPOCK3Q9BQ16 436 aa6.21□□□□□ -1.42
VPS35-203ENST00000562420 TUT1Q9H6E5 874 aaKnown RBP6.21□□□□□ -1.42
VPS35-203ENST00000562420 PHF20L1A8MW92 1017 aa6.2□□□□□ -1.42
VPS35-203ENST00000562420 ADAM23O75077 832 aa6.2□□□□□ -1.42
VPS35-203ENST00000562420 PDGFAP04085 211 aa6.2□□□□□ -1.42
VPS35-203ENST00000562420 NFKB1P19838 968 aa6.2□□□□□ -1.42
VPS35-203ENST00000562420 PCBP4P57723 403 aaKnown RBP6.2□□□□□ -1.42
VPS35-203ENST00000562420 ARHGAP4P98171 946 aa6.2□□□□□ -1.42
VPS35-203ENST00000562420 MTMR3Q13615 1198 aa6.2□□□□□ -1.42
VPS35-203ENST00000562420 C1orf229Q6ZS94 237 aaPredicted RBP6.2□□□□□ -1.42
VPS35-203ENST00000562420 CMTR1Q8N1G2 835 aaKnown RBP6.2□□□□□ -1.42
VPS35-203ENST00000562420 BEND7Q8N7W2 519 aaPredicted RBP6.2□□□□□ -1.42
VPS35-203ENST00000562420 GALNT6Q8NCL4 622 aa6.2□□□□□ -1.42
VPS35-203ENST00000562420 BHMTQ93088 406 aa6.2□□□□□ -1.42
VPS35-203ENST00000562420 CITED4Q96RK1 184 aa6.2□□□□□ -1.42
VPS35-203ENST00000562420 UBAP1LF5GYI3 381 aa6.19□□□□□ -1.42
VPS35-203ENST00000562420 FZD6O60353 706 aa6.19□□□□□ -1.42
VPS35-203ENST00000562420 NRLP54845 237 aa6.19□□□□□ -1.42
VPS35-203ENST00000562420 GPLD1P80108 840 aa6.19□□□□□ -1.42
VPS35-203ENST00000562420 GJD3Q8N144 294 aa6.19□□□□□ -1.42
VPS35-203ENST00000562420 TRPM4Q8TD43 1214 aa6.19□□□□□ -1.42
VPS35-203ENST00000562420 GPR152Q8TDT2 470 aa6.19□□□□□ -1.42
VPS35-203ENST00000562420 NUDT16Q96DE0 195 aaKnown RBP6.19□□□□□ -1.42
VPS35-203ENST00000562420 PSMG3-AS1Q96PY0 264 aa6.19□□□□□ -1.42
VPS35-203ENST00000562420 SHISA8B8ZZ34 492 aa6.18□□□□□ -1.42
VPS35-203ENST00000562420 RARAP10276 462 aa6.18□□□□□ -1.42
VPS35-203ENST00000562420 ALAS2P22557 587 aa6.18□□□□□ -1.42
VPS35-203ENST00000562420 ADH7P40394 386 aa6.18□□□□□ -1.42
VPS35-203ENST00000562420 PODNQ7Z5L7 613 aa6.18□□□□□ -1.42
VPS35-203ENST00000562420 ATCAYQ86WG3 371 aa6.18□□□□□ -1.42
VPS35-203ENST00000562420 EDEM1Q92611 657 aa6.18□□□□□ -1.42
VPS35-203ENST00000562420 PRDM6Q9NQX0 595 aa6.18□□□□□ -1.42
VPS35-203ENST00000562420 TLR7Q9NYK1 1049 aaKnown RBP6.18□□□□□ -1.42
VPS35-203ENST00000562420 ZFATQ9P243 1243 aa6.18□□□□□ -1.42
VPS35-203ENST00000562420 PIK3R2O00459 728 aa6.17□□□□□ -1.42
VPS35-203ENST00000562420 NDUFB5O43674 189 aa6.17□□□□□ -1.42
VPS35-203ENST00000562420 DGKGP49619 791 aa6.17□□□□□ -1.42
VPS35-203ENST00000562420 CHSY3Q70JA7 882 aa6.17□□□□□ -1.42
VPS35-203ENST00000562420 DHX32Q7L7V1 743 aaKnown RBP6.17□□□□□ -1.42
VPS35-203ENST00000562420 RAB44Q7Z6P3 723 aaPredicted RBP6.17□□□□□ -1.42
VPS35-203ENST00000562420 OR13H1Q8NG92 308 aa6.17□□□□□ -1.42
VPS35-203ENST00000562420 BTBD6Q96KE9 485 aa6.17□□□□□ -1.42
VPS35-203ENST00000562420 ANO2Q9NQ90 1003 aa6.17□□□□□ -1.42
VPS35-203ENST00000562420 FRRS1LQ9P0K9 344 aa6.17□□□□□ -1.42
VPS35-203ENST00000562420 USP20Q9Y2K6 914 aa6.17□□□□□ -1.42
VPS35-203ENST00000562420 IVNS1ABPQ9Y6Y0 642 aa6.17□□□□□ -1.42
VPS35-203ENST00000562420 SASH3O75995 380 aa6.16□□□□□ -1.42
VPS35-203ENST00000562420 PROCP04070 461 aa6.16□□□□□ -1.42
VPS35-203ENST00000562420 PSAPP07602 524 aa6.16□□□□□ -1.42
VPS35-203ENST00000562420 HOXB4P17483 251 aaPredicted RBP6.16□□□□□ -1.42
VPS35-203ENST00000562420 TARSP26639 723 aaKnown RBP6.16□□□□□ -1.42
VPS35-203ENST00000562420 PLAURQ03405 335 aa6.16□□□□□ -1.42
VPS35-203ENST00000562420 DNM1Q05193 864 aaKnown RBP6.16□□□□□ -1.42
VPS35-203ENST00000562420 HOMEZQ8IX15 550 aa6.16□□□□□ -1.42
VPS35-203ENST00000562420 TTC16Q8NEE8 873 aa6.16□□□□□ -1.42
VPS35-203ENST00000562420 FAM129BQ96TA1 746 aa6.16□□□□□ -1.42
VPS35-203ENST00000562420 UBE2OQ9C0C9 1292 aaKnown RBP6.16□□□□□ -1.42
VPS35-203ENST00000562420 DNAJB12Q9NXW2 375 aaKnown RBP6.16□□□□□ -1.42
VPS35-203ENST00000562420 ABI2Q9NYB9 513 aaPredicted RBP6.16□□□□□ -1.42
VPS35-203ENST00000562420 SLC6A14Q9UN76 642 aa6.16□□□□□ -1.42
VPS35-203ENST00000562420 POLIQ9UNA4 740 aa6.16□□□□□ -1.42
VPS35-203ENST00000562420 MMP20O60882 483 aa6.15□□□□□ -1.42
VPS35-203ENST00000562420 PDE3BQ13370 1112 aa6.15□□□□□ -1.42
VPS35-203ENST00000562420 ZNF438Q7Z4V0 828 aa6.15□□□□□ -1.42
VPS35-203ENST00000562420 TTC9Q92623 222 aa6.15□□□□□ -1.42
VPS35-203ENST00000562420 RBCK1Q9BYM8 510 aa6.15□□□□□ -1.42
VPS35-203ENST00000562420 ELP3Q9H9T3 547 aa6.15□□□□□ -1.42
VPS35-203ENST00000562420 BRPF3Q9ULD4 1205 aa6.15□□□□□ -1.42
VPS35-203ENST00000562420 MKL2Q9ULH7 1088 aa6.15□□□□□ -1.42
VPS35-203ENST00000562420 KIF4AO95239 1232 aa6.14□□□□□ -1.43
VPS35-203ENST00000562420 SNRPNP63162 240 aaKnown RBP6.14□□□□□ -1.43
VPS35-203ENST00000562420 AAMPQ13685 434 aa6.14□□□□□ -1.43
VPS35-203ENST00000562420 C20orf204Q6ZNR8 217 aa6.14□□□□□ -1.43
VPS35-203ENST00000562420 KRT25Q7Z3Z0 450 aa6.14□□□□□ -1.43
VPS35-203ENST00000562420 ALYREFQ86V81 257 aaKnown RBP6.14□□□□□ -1.43
VPS35-203ENST00000562420 SNX29Q8TEQ0 813 aa6.14□□□□□ -1.43
VPS35-203ENST00000562420 PMEPA1Q969W9 287 aa6.14□□□□□ -1.43
VPS35-203ENST00000562420 ALKBH8Q96BT7 664 aaKnown RBP6.14□□□□□ -1.43
VPS35-203ENST00000562420 GGNBP2Q9H3C7 697 aa6.14□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms