RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 DOK7Q18PE1 504 aa10.99□□□□□ -0.65
VPS39-205ENST00000562258 EYA3Q99504 573 aa10.99□□□□□ -0.65
VPS39-205ENST00000562258 CCDC69A6NI79 296 aa10.99□□□□□ -0.65
VPS39-205ENST00000562258 MPNDQ8N594 471 aa10.99□□□□□ -0.65
VPS39-205ENST00000562258 STX8Q9UNK0 236 aa10.99□□□□□ -0.65
VPS39-205ENST00000562258 CRB1P82279 1406 aa10.99□□□□□ -0.65
VPS39-205ENST00000562258 RICTORQ6R327 1708 aa10.99□□□□□ -0.65
VPS39-205ENST00000562258 UQCRFS1P1P0C7P4 283 aa10.99□□□□□ -0.65
VPS39-205ENST00000562258 MYCNP04198 464 aaPredicted RBP10.98□□□□□ -0.65
VPS39-205ENST00000562258 SLF2Q8IX21 1173 aa10.98□□□□□ -0.65
VPS39-205ENST00000562258 FBXO41Q8TF61 875 aa10.98□□□□□ -0.65
VPS39-205ENST00000562258 TCEANC2Q96MN5 208 aa10.98□□□□□ -0.65
VPS39-205ENST00000562258 SEC31BQ9NQW1 1179 aa10.98□□□□□ -0.65
VPS39-205ENST00000562258 HDAC9Q9UKV0 1011 aa10.98□□□□□ -0.65
VPS39-205ENST00000562258 ZNF213O14771 459 aa10.98□□□□□ -0.65
VPS39-205ENST00000562258 HIBADHP31937 336 aaKnown RBP10.98□□□□□ -0.65
VPS39-205ENST00000562258 CEBPZQ03701 1054 aaKnown RBP10.98□□□□□ -0.65
VPS39-205ENST00000562258 TBC1D9Q6ZT07 1266 aa10.98□□□□□ -0.65
VPS39-205ENST00000562258 OTUD7AQ8TE49 926 aaPredicted RBP10.98□□□□□ -0.65
VPS39-205ENST00000562258 ARHGEF1Q92888 912 aaKnown RBP10.98□□□□□ -0.65
VPS39-205ENST00000562258 GREM2Q9H772 168 aa10.98□□□□□ -0.65
VPS39-205ENST00000562258 HEG1Q9ULI3 1381 aa10.98□□□□□ -0.65
VPS39-205ENST00000562258 PDE6BP35913 854 aa10.98□□□□□ -0.65
VPS39-205ENST00000562258 PDE1AP54750 535 aa10.98□□□□□ -0.65
VPS39-205ENST00000562258 SPTY2D1Q68D10 685 aaPredicted RBP10.98□□□□□ -0.65
VPS39-205ENST00000562258 ANKRD2Q9GZV1 360 aa10.98□□□□□ -0.65
VPS39-205ENST00000562258 BLMP54132 1417 aaPredicted RBP10.97□□□□□ -0.65
VPS39-205ENST00000562258 CHMP4BP1P59074 171 aa10.97□□□□□ -0.65
VPS39-205ENST00000562258 ERFEQ4G0M1 354 aa10.97□□□□□ -0.65
VPS39-205ENST00000562258 DDX11Q96FC9 970 aa10.97□□□□□ -0.65
VPS39-205ENST00000562258 CASTP20810 708 aaKnown RBP10.97□□□□□ -0.65
VPS39-205ENST00000562258 GTF2IP78347 998 aa10.97□□□□□ -0.65
VPS39-205ENST00000562258 EVI5LQ96CN4 794 aa10.97□□□□□ -0.65
VPS39-205ENST00000562258 VAT1LQ9HCJ6 419 aa10.97□□□□□ -0.65
VPS39-205ENST00000562258 U3KPZ7 1027 aaPredicted RBP10.97□□□□□ -0.65
VPS39-205ENST00000562258 KIF24Q5T7B8 1368 aa10.97□□□□□ -0.65
VPS39-205ENST00000562258 SPATA31A5Q5VU36 1347 aa10.97□□□□□ -0.65
VPS39-205ENST00000562258 SPATA31A7Q8IWB4 1347 aa10.97□□□□□ -0.65
VPS39-205ENST00000562258 RPS6KA4O75676 772 aa10.97□□□□□ -0.65
VPS39-205ENST00000562258 LDHBP07195 334 aaKnown RBP10.97□□□□□ -0.65
VPS39-205ENST00000562258 ALDH1B1P30837 517 aa10.97□□□□□ -0.65
VPS39-205ENST00000562258 EAPPQ56P03 285 aaPredicted RBP10.97□□□□□ -0.65
VPS39-205ENST00000562258 LMOD1P29536 600 aaPredicted RBP10.96□□□□□ -0.65
VPS39-205ENST00000562258 GYG1P46976 350 aa10.96□□□□□ -0.65
VPS39-205ENST00000562258 TTF1Q15361 905 aaPredicted RBP10.96□□□□□ -0.65
VPS39-205ENST00000562258 EZH2Q15910 746 aaKnown RBP10.96□□□□□ -0.65
VPS39-205ENST00000562258 MAGEB6Q8N7X4 407 aa10.96□□□□□ -0.65
VPS39-205ENST00000562258 MST1RQ04912 1400 aa10.96□□□□□ -0.65
VPS39-205ENST00000562258 CDC42BPGQ6DT37 1551 aa10.96□□□□□ -0.65
VPS39-205ENST00000562258 TSPY2A6NKD2 308 aa10.96□□□□□ -0.65
VPS39-205ENST00000562258 CCDC96Q2M329 555 aa10.96□□□□□ -0.65
VPS39-205ENST00000562258 CCDC144CPQ8IYA2 1237 aa10.96□□□□□ -0.65
VPS39-205ENST00000562258 CCDC43Q96MW1 224 aaKnown RBP10.96□□□□□ -0.65
VPS39-205ENST00000562258 USP31Q70CQ4 1352 aa10.96□□□□□ -0.66
VPS39-205ENST00000562258 SNAP23O00161 211 aa10.96□□□□□ -0.66
VPS39-205ENST00000562258 CTSWP56202 376 aa10.96□□□□□ -0.66
VPS39-205ENST00000562258 LRRC24Q50LG9 513 aa10.96□□□□□ -0.66
VPS39-205ENST00000562258 ZBTB38Q8NAP3 1195 aaPredicted RBP10.96□□□□□ -0.66
VPS39-205ENST00000562258 PUS3Q9BZE2 481 aaKnown RBP10.96□□□□□ -0.66
VPS39-205ENST00000562258 SLC4A4Q9Y6R1 1079 aa10.96□□□□□ -0.66
VPS39-205ENST00000562258 CPS1P31327 1500 aa10.96□□□□□ -0.66
VPS39-205ENST00000562258 TRPM1Q7Z4N2 1603 aa10.96□□□□□ -0.66
VPS39-205ENST00000562258 TECPR2O15040 1411 aa10.95□□□□□ -0.66
VPS39-205ENST00000562258 SDSP20132 328 aa10.95□□□□□ -0.66
VPS39-205ENST00000562258 KIAA0825Q8IV33 1275 aa10.95□□□□□ -0.66
VPS39-205ENST00000562258 EDC3Q96F86 508 aaKnown RBP10.95□□□□□ -0.66
VPS39-205ENST00000562258 SOS1Q07889 1333 aaPredicted RBP10.95□□□□□ -0.66
VPS39-205ENST00000562258 EIF6P56537 245 aaKnown RBP10.95□□□□□ -0.66
VPS39-205ENST00000562258 BEND3Q5T5X7 828 aa10.95□□□□□ -0.66
VPS39-205ENST00000562258 XAGE2Q96GT9 111 aa10.95□□□□□ -0.66
VPS39-205ENST00000562258 LRRC2Q9BYS8 371 aa10.95□□□□□ -0.66
VPS39-205ENST00000562258 PAG1Q9NWQ8 432 aa10.95□□□□□ -0.66
VPS39-205ENST00000562258 SUSD4Q5VX71 490 aa10.95□□□□□ -0.66
VPS39-205ENST00000562258 DCTPP1Q9H773 170 aa10.95□□□□□ -0.66
VPS39-205ENST00000562258 XBP1P17861 261 aa10.95□□□□□ -0.66
VPS39-205ENST00000562258 TCP10Q12799 353 aa10.95□□□□□ -0.66
VPS39-205ENST00000562258 IQCA1Q86XH1 822 aa10.95□□□□□ -0.66
VPS39-205ENST00000562258 CCDC34Q96HJ3 373 aa10.95□□□□□ -0.66
VPS39-205ENST00000562258 MCM9Q9NXL9 1143 aa10.95□□□□□ -0.66
VPS39-205ENST00000562258 PES1O00541 588 aaKnown RBP10.94□□□□□ -0.66
VPS39-205ENST00000562258 IFIT3O14879 490 aaKnown RBP10.94□□□□□ -0.66
VPS39-205ENST00000562258 HLA-DOAP06340 250 aa10.94□□□□□ -0.66
VPS39-205ENST00000562258 TRMT1LQ7Z2T5 733 aaKnown RBP10.94□□□□□ -0.66
VPS39-205ENST00000562258 NLRP10Q86W26 655 aa10.94□□□□□ -0.66
VPS39-205ENST00000562258 NIM1KQ8IY84 436 aa10.94□□□□□ -0.66
VPS39-205ENST00000562258 TRIM44Q96DX7 344 aaPredicted RBP10.94□□□□□ -0.66
VPS39-205ENST00000562258 CRNKL1Q9BZJ0 848 aaKnown RBP10.94□□□□□ -0.66
VPS39-205ENST00000562258 ANO8Q9HCE9 1232 aaPredicted RBP10.94□□□□□ -0.66
VPS39-205ENST00000562258 DIP2AQ14689 1571 aa10.94□□□□□ -0.66
VPS39-205ENST00000562258 TRIM22Q8IYM9 498 aa10.94□□□□□ -0.66
VPS39-205ENST00000562258 BICD2Q8TD16 824 aa10.94□□□□□ -0.66
VPS39-205ENST00000562258 ZNF287Q9HBT7 754 aa10.94□□□□□ -0.66
VPS39-205ENST00000562258 PDRG1Q9NUG6 133 aa10.94□□□□□ -0.66
VPS39-205ENST00000562258 PNPLA6Q8IY17 1366 aa10.94□□□□□ -0.66
VPS39-205ENST00000562258 C21orf2O43822 256 aa10.94□□□□□ -0.66
VPS39-205ENST00000562258 PUM3Q15397 648 aaKnown RBP10.94□□□□□ -0.66
VPS39-205ENST00000562258 CNKSR1Q969H4 720 aa10.94□□□□□ -0.66
VPS39-205ENST00000562258 GPR101Q96P66 508 aaPredicted RBP10.93□□□□□ -0.66
VPS39-205ENST00000562258 CABP5Q9NP86 173 aa10.93□□□□□ -0.66
VPS39-205ENST00000562258 CDK12Q9NYV4 1490 aaPredicted RBP10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms