RNA–Protein interactions for RNA: ENST00000562118.1

CDH1-204, Transcript of cadherin 1, humanhuman

TSL 2

Gene CDH1, Length 952 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-204ENST00000562118 DUOX1Q9NRD9 1551 aa16.99■□□□□ 0.31
CDH1-204ENST00000562118 SPEF2Q9C093 1822 aa16.99■□□□□ 0.31
CDH1-204ENST00000562118 FOXO4P98177 505 aa16.99■□□□□ 0.31
CDH1-204ENST00000562118 ZKSCAN2Q63HK3 967 aa16.99■□□□□ 0.31
CDH1-204ENST00000562118 SLC4A10Q6U841 1118 aa16.99■□□□□ 0.31
CDH1-204ENST00000562118 TTLL11Q8NHH1 800 aa16.99■□□□□ 0.31
CDH1-204ENST00000562118 RBM17Q96I25 401 aaKnown RBP16.99■□□□□ 0.31
CDH1-204ENST00000562118 LTBP3Q9NS15 1303 aa16.98■□□□□ 0.31
CDH1-204ENST00000562118 NBPF7P0C2Y1 421 aaPredicted RBP16.98■□□□□ 0.31
CDH1-204ENST00000562118 RABL6Q3YEC7 729 aaPredicted RBP16.98■□□□□ 0.31
CDH1-204ENST00000562118 RPGRQ92834 1020 aaKnown RBP16.98■□□□□ 0.31
CDH1-204ENST00000562118 ZNF622Q969S3 477 aaKnown RBP eCLIP16.98■□□□□ 0.31
CDH1-204ENST00000562118 TNNQ9UQP3 1299 aa16.98■□□□□ 0.31
CDH1-204ENST00000562118 BCS1LQ9Y276 419 aa16.98■□□□□ 0.31
CDH1-204ENST00000562118 CCDC88AQ3V6T2 1871 aa16.98■□□□□ 0.31
CDH1-204ENST00000562118 GRAPQ13588 217 aa16.97■□□□□ 0.31
CDH1-204ENST00000562118 GPR162Q16538 588 aa16.97■□□□□ 0.31
CDH1-204ENST00000562118 RTL5Q5HYW3 569 aaPredicted RBP16.97■□□□□ 0.31
CDH1-204ENST00000562118 GRAPLQ8TC17 118 aaPredicted RBP16.97■□□□□ 0.31
CDH1-204ENST00000562118 JARID2Q92833 1246 aaPredicted RBP16.97■□□□□ 0.31
CDH1-204ENST00000562118 YTHDC1Q96MU7 727 aaKnown RBP16.97■□□□□ 0.31
CDH1-204ENST00000562118 CCDC152Q4G0S7 254 aa16.96■□□□□ 0.31
CDH1-204ENST00000562118 EPHA10Q5JZY3 1008 aa16.96■□□□□ 0.31
CDH1-204ENST00000562118 SOGA3Q5TF21 947 aa16.96■□□□□ 0.31
CDH1-204ENST00000562118 TMC4Q7Z404 712 aa16.96■□□□□ 0.31
CDH1-204ENST00000562118 TIAM2Q8IVF5 1701 aa16.96■□□□□ 0.3
CDH1-204ENST00000562118 BBOX1O75936 387 aa16.95■□□□□ 0.3
CDH1-204ENST00000562118 RLBP1P12271 317 aa16.95■□□□□ 0.3
CDH1-204ENST00000562118 GRIPAP1Q4V328 841 aa16.95■□□□□ 0.3
CDH1-204ENST00000562118 CC2D2BQ6DHV5 1058 aa16.95■□□□□ 0.3
CDH1-204ENST00000562118 DDX46Q7L014 1031 aaKnown RBP16.95■□□□□ 0.3
CDH1-204ENST00000562118 SUCLG2Q96I99 432 aa16.95■□□□□ 0.3
CDH1-204ENST00000562118 C9orf78Q9NZ63 289 aaPredicted RBP16.95■□□□□ 0.3
CDH1-204ENST00000562118 NFKBIEO00221 500 aa16.94■□□□□ 0.3
CDH1-204ENST00000562118 ANKRD44Q8N8A2 993 aa16.94■□□□□ 0.3
CDH1-204ENST00000562118 FRAT1Q92837 279 aaPredicted RBP16.94■□□□□ 0.3
CDH1-204ENST00000562118 CELF1Q92879 486 aaKnown RBP16.94■□□□□ 0.3
CDH1-204ENST00000562118 ATP6V0A2Q9Y487 856 aa16.94■□□□□ 0.3
CDH1-204ENST00000562118 PPEF1O14829 653 aaPredicted RBP16.93■□□□□ 0.3
CDH1-204ENST00000562118 C21orf2O43822 256 aa16.93■□□□□ 0.3
CDH1-204ENST00000562118 SP8Q8IXZ3 490 aa16.93■□□□□ 0.3
CDH1-204ENST00000562118 DZIP1LQ8IYY4 767 aaKnown RBP16.93■□□□□ 0.3
CDH1-204ENST00000562118 TMEM57Q8N5G2 664 aa16.93■□□□□ 0.3
CDH1-204ENST00000562118 GREM2Q9H772 168 aa16.93■□□□□ 0.3
CDH1-204ENST00000562118 SEC31BQ9NQW1 1179 aa16.93■□□□□ 0.3
CDH1-204ENST00000562118 WWC3Q9ULE0 1092 aa16.93■□□□□ 0.3
CDH1-204ENST00000562118 DCAF8L1A6NGE4 600 aa16.92■□□□□ 0.3
CDH1-204ENST00000562118 PRELPP51888 382 aa16.92■□□□□ 0.3
CDH1-204ENST00000562118 CCDC93Q567U6 631 aa16.92■□□□□ 0.3
CDH1-204ENST00000562118 SLC51AQ86UW1 340 aa16.92■□□□□ 0.3
CDH1-204ENST00000562118 PSMD1Q99460 953 aa16.92■□□□□ 0.3
CDH1-204ENST00000562118 MEIS3Q99687 375 aa16.92■□□□□ 0.3
CDH1-204ENST00000562118 RTFDC1Q9BY42 306 aaPredicted RBP16.92■□□□□ 0.3
CDH1-204ENST00000562118 RPS8P62241 208 aaKnown RBP16.91■□□□□ 0.3
CDH1-204ENST00000562118 FAM161AQ3B820 660 aa16.91■□□□□ 0.3
CDH1-204ENST00000562118 MTX1Q13505 466 aa16.9■□□□□ 0.3
CDH1-204ENST00000562118 PDE3AQ14432 1141 aa16.9■□□□□ 0.3
CDH1-204ENST00000562118 OLFM4Q6UX06 510 aa16.9■□□□□ 0.3
CDH1-204ENST00000562118 RTKN2Q8IZC4 609 aa16.9■□□□□ 0.3
CDH1-204ENST00000562118 PELP1Q8IZL8 1130 aaKnown RBP16.9■□□□□ 0.3
CDH1-204ENST00000562118 CLUAP1Q96AJ1 413 aa16.9■□□□□ 0.3
CDH1-204ENST00000562118 BICC1Q9H694 974 aaKnown RBP16.9■□□□□ 0.3
CDH1-204ENST00000562118 COL4A5P29400 1685 aa16.9■□□□□ 0.3
CDH1-204ENST00000562118 GNAI3P08754 354 aa16.89■□□□□ 0.29
CDH1-204ENST00000562118 MS4A1P11836 297 aa16.89■□□□□ 0.29
CDH1-204ENST00000562118 ITGA6P23229 1130 aa16.89■□□□□ 0.29
CDH1-204ENST00000562118 FKBP4Q02790 459 aaKnown RBP eCLIP16.89■□□□□ 0.29
CDH1-204ENST00000562118 LMBR1LQ6UX01 489 aa16.89■□□□□ 0.29
CDH1-204ENST00000562118 CDC5LQ99459 802 aaKnown RBP16.89■□□□□ 0.29
CDH1-204ENST00000562118 BSDC1Q9NW68 430 aaPredicted RBP16.89■□□□□ 0.29
CDH1-204ENST00000562118 PODXL2Q9NZ53 605 aa16.89■□□□□ 0.29
CDH1-204ENST00000562118 ZBTB7BO15156 539 aaPredicted RBP16.88■□□□□ 0.29
CDH1-204ENST00000562118 TAOK3Q9H2K8 898 aa16.88■□□□□ 0.29
CDH1-204ENST00000562118 HDAC5Q9UQL6 1122 aa16.88■□□□□ 0.29
CDH1-204ENST00000562118 ZNF646O15015 1829 aaPredicted RBP16.88■□□□□ 0.29
CDH1-204ENST00000562118 ZC3H4Q9UPT8 1303 aaKnown RBP16.88■□□□□ 0.29
CDH1-204ENST00000562118 PSME4Q14997 1843 aa16.87■□□□□ 0.29
CDH1-204ENST00000562118 UBTFL1P0CB47 393 aaPredicted RBP16.87■□□□□ 0.29
CDH1-204ENST00000562118 RFX5P48382 616 aaPredicted RBP16.87■□□□□ 0.29
CDH1-204ENST00000562118 RASSF7Q02833 373 aa16.87■□□□□ 0.29
CDH1-204ENST00000562118 ARHGAP27Q6ZUM4 889 aa16.87■□□□□ 0.29
CDH1-204ENST00000562118 ANKRD18AQ8IVF6 992 aa16.87■□□□□ 0.29
CDH1-204ENST00000562118 FTSJ3Q8IY81 847 aaKnown RBP16.87■□□□□ 0.29
CDH1-204ENST00000562118 VPS33BQ9H267 617 aa16.87■□□□□ 0.29
CDH1-204ENST00000562118 ANKRD18BA2A2Z9 1011 aa16.86■□□□□ 0.29
CDH1-204ENST00000562118 LMNB1P20700 586 aa16.86■□□□□ 0.29
CDH1-204ENST00000562118 IFIT5Q13325 482 aaKnown RBP16.86■□□□□ 0.29
CDH1-204ENST00000562118 MVPQ14764 893 aaKnown RBP16.86■□□□□ 0.29
CDH1-204ENST00000562118 PANK1Q8TE04 598 aa16.86■□□□□ 0.29
CDH1-204ENST00000562118 CCDC85AQ96PX6 553 aaPredicted RBP16.86■□□□□ 0.29
CDH1-204ENST00000562118 PLIN1O60240 522 aa16.85■□□□□ 0.29
CDH1-204ENST00000562118 RRP1P56182 461 aaKnown RBP16.85■□□□□ 0.29
CDH1-204ENST00000562118 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.85■□□□□ 0.29
CDH1-204ENST00000562118 LRRFIP2Q9Y608 721 aaKnown RBP16.85■□□□□ 0.29
CDH1-204ENST00000562118 C20orf194Q5TEA3 1177 aa16.84■□□□□ 0.29
CDH1-204ENST00000562118 MINPP1Q9UNW1 487 aa16.84■□□□□ 0.29
CDH1-204ENST00000562118 GNAI2P04899 355 aa16.83■□□□□ 0.28
CDH1-204ENST00000562118 IGHMBP2P38935 993 aaKnown RBP16.83■□□□□ 0.28
CDH1-204ENST00000562118 GPSM2P81274 684 aa16.83■□□□□ 0.28
CDH1-204ENST00000562118 CCDC57Q2TAC2 916 aa16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms