RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 COL4A1P02462 1669 aa20.07■□□□□ 0.8
VPS39-203ENST00000561797 SPEF2Q9C093 1822 aa20.06■□□□□ 0.8
VPS39-203ENST00000561797 POTECB2RU33 542 aa20.06■□□□□ 0.8
VPS39-203ENST00000561797 PCCAP05165 728 aaPredicted RBP20.06■□□□□ 0.8
VPS39-203ENST00000561797 NEXNQ0ZGT2 675 aa20.06■□□□□ 0.8
VPS39-203ENST00000561797 FLIIQ13045 1269 aa20.06■□□□□ 0.8
VPS39-203ENST00000561797 SP8Q8IXZ3 490 aa20.06■□□□□ 0.8
VPS39-203ENST00000561797 JDP2Q8WYK2 163 aa20.06■□□□□ 0.8
VPS39-203ENST00000561797 COL4A5P29400 1685 aa20.06■□□□□ 0.8
VPS39-203ENST00000561797 ZNF541Q9H0D2 1346 aa20.05■□□□□ 0.8
VPS39-203ENST00000561797 IGKV5-2P06315 115 aa20.05■□□□□ 0.8
VPS39-203ENST00000561797 FKBP5Q13451 457 aaPredicted RBP20.05■□□□□ 0.8
VPS39-203ENST00000561797 ZNF521Q96K83 1311 aa20.04■□□□□ 0.8
VPS39-203ENST00000561797 CWF19L2Q2TBE0 894 aaKnown RBP20.04■□□□□ 0.8
VPS39-203ENST00000561797 LARGE2Q8N3Y3 721 aa20.04■□□□□ 0.8
VPS39-203ENST00000561797 MPNDQ8N594 471 aa20.04■□□□□ 0.8
VPS39-203ENST00000561797 CELF1Q92879 486 aaKnown RBP20.04■□□□□ 0.8
VPS39-203ENST00000561797 CCER2I3L3R5 266 aa20.03■□□□□ 0.8
VPS39-203ENST00000561797 HSP90B1P14625 803 aaKnown RBP20.03■□□□□ 0.8
VPS39-203ENST00000561797 DPP8Q6V1X1 898 aaPredicted RBP20.03■□□□□ 0.8
VPS39-203ENST00000561797 FZD9O00144 591 aa20.02■□□□□ 0.8
VPS39-203ENST00000561797 PPIP5K2O43314 1243 aa20.02■□□□□ 0.8
VPS39-203ENST00000561797 PDE8AO60658 829 aa20.02■□□□□ 0.8
VPS39-203ENST00000561797 AOC3Q16853 763 aa20.02■□□□□ 0.8
VPS39-203ENST00000561797 SUPT20HQ8NEM7 779 aa20.02■□□□□ 0.8
VPS39-203ENST00000561797 CCDC85AQ96PX6 553 aaPredicted RBP20.02■□□□□ 0.8
VPS39-203ENST00000561797 NEURL1BA8MQ27 555 aa20.01■□□□□ 0.79
VPS39-203ENST00000561797 FSTL1Q12841 308 aa20.01■□□□□ 0.79
VPS39-203ENST00000561797 TMC4Q7Z404 712 aa20.01■□□□□ 0.79
VPS39-203ENST00000561797 SMC1BQ8NDV3 1235 aa20.01■□□□□ 0.79
VPS39-203ENST00000561797 DNAAF4Q8WXU2 420 aa20.01■□□□□ 0.79
VPS39-203ENST00000561797 SEC31BQ9NQW1 1179 aa20.01■□□□□ 0.79
VPS39-203ENST00000561797 CDHR2Q9BYE9 1310 aa20.01■□□□□ 0.79
VPS39-203ENST00000561797 EIF6P56537 245 aaKnown RBP20■□□□□ 0.79
VPS39-203ENST00000561797 NIM1KQ8IY84 436 aa20■□□□□ 0.79
VPS39-203ENST00000561797 GJA3Q9Y6H8 435 aa20■□□□□ 0.79
VPS39-203ENST00000561797 RPS8P62241 208 aaKnown RBP19.99■□□□□ 0.79
VPS39-203ENST00000561797 CCDC152Q4G0S7 254 aa19.99■□□□□ 0.79
VPS39-203ENST00000561797 RTFDC1Q9BY42 306 aaPredicted RBP19.99■□□□□ 0.79
VPS39-203ENST00000561797 DUOX1Q9NRD9 1551 aa19.99■□□□□ 0.79
VPS39-203ENST00000561797 IQCA1LA6NCM1 817 aa19.98■□□□□ 0.79
VPS39-203ENST00000561797 F6X3S4 739 aa19.98■□□□□ 0.79
VPS39-203ENST00000561797 UBE3BQ7Z3V4 1068 aa19.98■□□□□ 0.79
VPS39-203ENST00000561797 L3MBTL3Q96JM7 780 aaPredicted RBP19.98■□□□□ 0.79
VPS39-203ENST00000561797 VPS33BQ9H267 617 aa19.98■□□□□ 0.79
VPS39-203ENST00000561797 NSFL1CQ9UNZ2 370 aaKnown RBP19.98■□□□□ 0.79
VPS39-203ENST00000561797 LTBP1Q14766 1721 aa19.97■□□□□ 0.79
VPS39-203ENST00000561797 E9PSI1 815 aa19.97■□□□□ 0.79
VPS39-203ENST00000561797 H7C1W4 665 aa19.97■□□□□ 0.79
VPS39-203ENST00000561797 APLP1P51693 650 aa19.97■□□□□ 0.79
VPS39-203ENST00000561797 GCKRQ14397 625 aa19.97■□□□□ 0.79
VPS39-203ENST00000561797 GPC2Q8N158 579 aa19.97■□□□□ 0.79
VPS39-203ENST00000561797 CTSWP56202 376 aa19.96■□□□□ 0.79
VPS39-203ENST00000561797 GPSM2P81274 684 aa19.96■□□□□ 0.79
VPS39-203ENST00000561797 LINS1Q8NG48 757 aa19.96■□□□□ 0.79
VPS39-203ENST00000561797 TAF1DQ9H5J8 278 aaPredicted RBP19.96■□□□□ 0.79
VPS39-203ENST00000561797 HACL1Q9UJ83 578 aa19.96■□□□□ 0.79
VPS39-203ENST00000561797 C6orf229H3BNL8 230 aa19.95■□□□□ 0.78
VPS39-203ENST00000561797 POTEIP0CG38 1075 aa19.95■□□□□ 0.78
VPS39-203ENST00000561797 POTEJP0CG39 1038 aa19.95■□□□□ 0.78
VPS39-203ENST00000561797 SLFN5Q08AF3 891 aa19.95■□□□□ 0.78
VPS39-203ENST00000561797 KIAA2012Q0VF49 1180 aa19.95■□□□□ 0.78
VPS39-203ENST00000561797 DIEXFQ68CQ4 756 aaKnown RBP19.95■□□□□ 0.78
VPS39-203ENST00000561797 CDCA7LQ96GN5 454 aa19.95■□□□□ 0.78
VPS39-203ENST00000561797 RIMBP2O15034 1052 aa19.94■□□□□ 0.78
VPS39-203ENST00000561797 EAPPQ56P03 285 aaPredicted RBP19.94■□□□□ 0.78
VPS39-203ENST00000561797 ANKRD18AQ8IVF6 992 aa19.94■□□□□ 0.78
VPS39-203ENST00000561797 TTLL11Q8NHH1 800 aa19.94■□□□□ 0.78
VPS39-203ENST00000561797 ZNRF3Q9ULT6 936 aa19.94■□□□□ 0.78
VPS39-203ENST00000561797 EPHX2P34913 555 aa19.93■□□□□ 0.78
VPS39-203ENST00000561797 HTRA3P83110 453 aa19.93■□□□□ 0.78
VPS39-203ENST00000561797 WASHC4Q2M389 1173 aa19.93■□□□□ 0.78
VPS39-203ENST00000561797 POLLQ9UGP5 575 aa19.93■□□□□ 0.78
VPS39-203ENST00000561797 CXCL9Q07325 125 aa19.92■□□□□ 0.78
VPS39-203ENST00000561797 BEND3Q5T5X7 828 aa19.92■□□□□ 0.78
VPS39-203ENST00000561797 CHADLQ6NUI6 762 aa19.92■□□□□ 0.78
VPS39-203ENST00000561797 SLC4A10Q6U841 1118 aa19.92■□□□□ 0.78
VPS39-203ENST00000561797 MIER1Q8N108 512 aa19.92■□□□□ 0.78
VPS39-203ENST00000561797 GPR101Q96P66 508 aaPredicted RBP19.92■□□□□ 0.78
VPS39-203ENST00000561797 GREM2Q9H772 168 aa19.92■□□□□ 0.78
VPS39-203ENST00000561797 ANKIB1Q9P2G1 1089 aa19.92■□□□□ 0.78
VPS39-203ENST00000561797 CLEC11AQ9Y240 323 aa19.92■□□□□ 0.78
VPS39-203ENST00000561797 ADAMTSL1Q8N6G6 1762 aa19.91■□□□□ 0.78
VPS39-203ENST00000561797 LMOD1P29536 600 aaPredicted RBP19.91■□□□□ 0.78
VPS39-203ENST00000561797 CASP7P55210 303 aa19.91■□□□□ 0.78
VPS39-203ENST00000561797 CDC5LQ99459 802 aaKnown RBP19.91■□□□□ 0.78
VPS39-203ENST00000561797 RAD17O75943 681 aa19.9■□□□□ 0.78
VPS39-203ENST00000561797 MRPL50Q8N5N7 158 aaKnown RBP19.9■□□□□ 0.78
VPS39-203ENST00000561797 TBC1D16Q8TBP0 767 aa19.9■□□□□ 0.78
VPS39-203ENST00000561797 EYA3Q99504 573 aa19.9■□□□□ 0.78
VPS39-203ENST00000561797 DBNDD1Q9H9R9 158 aa19.9■□□□□ 0.78
VPS39-203ENST00000561797 UFL1O94874 794 aa19.89■□□□□ 0.77
VPS39-203ENST00000561797 EPS15P42566 896 aa19.89■□□□□ 0.77
VPS39-203ENST00000561797 SCNN1DP51172 638 aa19.89■□□□□ 0.77
VPS39-203ENST00000561797 SCN9AQ15858 1988 aa19.89■□□□□ 0.77
VPS39-203ENST00000561797 CIAPIN1Q6FI81 312 aa19.89■□□□□ 0.77
VPS39-203ENST00000561797 LDHDQ86WU2 507 aa19.89■□□□□ 0.77
VPS39-203ENST00000561797 PLA2G12BQ9BX93 195 aa19.89■□□□□ 0.77
VPS39-203ENST00000561797 YDJCA8MPS7 323 aa19.88■□□□□ 0.77
VPS39-203ENST00000561797 DOK7Q18PE1 504 aa19.88■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms