RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 CHPF2Q9P2E5 772 aa24.79■■□□□ 1.56
VPS35-202ENST00000561713 COPS6Q7L5N1 327 aa24.78■■□□□ 1.56
VPS35-202ENST00000561713 VPS33BQ9H267 617 aa24.78■■□□□ 1.56
VPS35-202ENST00000561713 ADARB2Q9NS39 739 aaKnown RBP24.78■■□□□ 1.56
VPS35-202ENST00000561713 ZNRF3Q9ULT6 936 aa24.78■■□□□ 1.56
VPS35-202ENST00000561713 THSD7BQ9C0I4 1608 aa24.78■■□□□ 1.56
VPS35-202ENST00000561713 ECE1P42892 770 aa24.77■■□□□ 1.56
VPS35-202ENST00000561713 RTFDC1Q9BY42 306 aaPredicted RBP24.77■■□□□ 1.56
VPS35-202ENST00000561713 TLL2Q9Y6L7 1015 aa24.77■■□□□ 1.56
VPS35-202ENST00000561713 TRPM7Q96QT4 1865 aa24.77■■□□□ 1.56
VPS35-202ENST00000561713 GMPSP49915 693 aaPredicted RBP24.76■■□□□ 1.55
VPS35-202ENST00000561713 HCLS1P14317 486 aaPredicted RBP24.75■■□□□ 1.55
VPS35-202ENST00000561713 HDGFL1Q5TGJ6 251 aa24.75■■□□□ 1.55
VPS35-202ENST00000561713 DPP8Q6V1X1 898 aaPredicted RBP24.75■■□□□ 1.55
VPS35-202ENST00000561713 SUPT20HQ8NEM7 779 aa24.75■■□□□ 1.55
VPS35-202ENST00000561713 BEGAINQ9BUH8 593 aa24.75■■□□□ 1.55
VPS35-202ENST00000561713 AOC2O75106 756 aa24.74■■□□□ 1.55
VPS35-202ENST00000561713 BBOX1O75936 387 aa24.74■■□□□ 1.55
VPS35-202ENST00000561713 NLRP10Q86W26 655 aa24.74■■□□□ 1.55
VPS35-202ENST00000561713 SP8Q8IXZ3 490 aa24.74■■□□□ 1.55
VPS35-202ENST00000561713 APAF1O14727 1248 aa24.73■■□□□ 1.55
VPS35-202ENST00000561713 MPNDQ8N594 471 aa24.73■■□□□ 1.55
VPS35-202ENST00000561713 GLIS2Q9BZE0 524 aaPredicted RBP24.73■■□□□ 1.55
VPS35-202ENST00000561713 MBIPQ9NS73 344 aa24.73■■□□□ 1.55
VPS35-202ENST00000561713 COL4A1P02462 1669 aa24.72■■□□□ 1.55
VPS35-202ENST00000561713 RAD17O75943 681 aa24.72■■□□□ 1.55
VPS35-202ENST00000561713 CELF2O95319 508 aaKnown RBP24.72■■□□□ 1.55
VPS35-202ENST00000561713 KIAA2012Q0VF49 1180 aa24.72■■□□□ 1.55
VPS35-202ENST00000561713 CIAPIN1Q6FI81 312 aa24.72■■□□□ 1.55
VPS35-202ENST00000561713 SAPCD2Q86UD0 394 aa24.72■■□□□ 1.55
VPS35-202ENST00000561713 TSKSQ9UJT2 592 aa24.72■■□□□ 1.55
VPS35-202ENST00000561713 HIRAP54198 1017 aaPredicted RBP24.71■■□□□ 1.55
VPS35-202ENST00000561713 TRMT112Q9UI30 125 aaKnown RBP24.71■■□□□ 1.55
VPS35-202ENST00000561713 LRRC37AA6NMS7 1700 aa24.7■■□□□ 1.54
VPS35-202ENST00000561713 CCDC184Q52MB2 194 aa24.7■■□□□ 1.54
VPS35-202ENST00000561713 HSP90AB3PQ58FF7 597 aa24.7■■□□□ 1.54
VPS35-202ENST00000561713 DDX46Q7L014 1031 aaKnown RBP24.7■■□□□ 1.54
VPS35-202ENST00000561713 BCL2L13Q9BXK5 485 aa24.7■■□□□ 1.54
VPS35-202ENST00000561713 PGAP2Q9UHJ9 254 aa24.7■■□□□ 1.54
VPS35-202ENST00000561713 MAP2K2P36507 400 aa24.69■■□□□ 1.54
VPS35-202ENST00000561713 TCIRG1Q13488 830 aa24.69■■□□□ 1.54
VPS35-202ENST00000561713 DUSP27Q5VZP5 1158 aa24.69■■□□□ 1.54
VPS35-202ENST00000561713 CFAP44Q96MT7 982 aa24.69■■□□□ 1.54
VPS35-202ENST00000561713 SHTN1A0MZ66 631 aa24.68■■□□□ 1.54
VPS35-202ENST00000561713 GRAPQ13588 217 aa24.68■■□□□ 1.54
VPS35-202ENST00000561713 TNIP1Q15025 636 aa24.68■■□□□ 1.54
VPS35-202ENST00000561713 GRAPLQ8TC17 118 aaPredicted RBP24.68■■□□□ 1.54
VPS35-202ENST00000561713 TRPM4Q8TD43 1214 aa24.68■■□□□ 1.54
VPS35-202ENST00000561713 SH3TC1Q8TE82 1336 aa24.67■■□□□ 1.54
VPS35-202ENST00000561713 CDHR2Q9BYE9 1310 aa24.67■■□□□ 1.54
VPS35-202ENST00000561713 YDJCA8MPS7 323 aa24.67■■□□□ 1.54
VPS35-202ENST00000561713 FAM161AQ3B820 660 aa24.67■■□□□ 1.54
VPS35-202ENST00000561713 ZNF408Q9H9D4 720 aa24.67■■□□□ 1.54
VPS35-202ENST00000561713 CCDC85CA6NKD9 419 aa24.66■■□□□ 1.54
VPS35-202ENST00000561713 HOXB7P09629 217 aa24.66■■□□□ 1.54
VPS35-202ENST00000561713 ZC3H15Q8WU90 426 aaKnown RBP24.66■■□□□ 1.54
VPS35-202ENST00000561713 CNOT7Q9UIV1 285 aaKnown RBP24.66■■□□□ 1.54
VPS35-202ENST00000561713 DUOX1Q9NRD9 1551 aa24.66■■□□□ 1.54
VPS35-202ENST00000561713 ATP5J2-PTCD1G3V325 749 aa24.65■■□□□ 1.54
VPS35-202ENST00000561713 ELL2O00472 640 aaPredicted RBP24.65■■□□□ 1.54
VPS35-202ENST00000561713 ZNF853P0CG23 659 aa24.64■■□□□ 1.54
VPS35-202ENST00000561713 PLBD2Q8NHP8 589 aa24.64■■□□□ 1.54
VPS35-202ENST00000561713 HHIPL1Q96JK4 782 aa24.64■■□□□ 1.54
VPS35-202ENST00000561713 IFT57Q9NWB7 429 aa24.64■■□□□ 1.54
VPS35-202ENST00000561713 DBF4Q9UBU7 674 aaPredicted RBP24.64■■□□□ 1.54
VPS35-202ENST00000561713 DLK2Q6UY11 383 aa24.63■■□□□ 1.53
VPS35-202ENST00000561713 CDC37L1Q7L3B6 337 aa24.63■■□□□ 1.53
VPS35-202ENST00000561713 MICALL2Q8IY33 904 aa24.63■■□□□ 1.53
VPS35-202ENST00000561713 ZBTB12Q9Y330 459 aaPredicted RBP24.63■■□□□ 1.53
VPS35-202ENST00000561713 RTL5Q5HYW3 569 aaPredicted RBP24.62■■□□□ 1.53
VPS35-202ENST00000561713 USP48Q86UV5 1035 aa24.62■■□□□ 1.53
VPS35-202ENST00000561713 H7C1D1 291 aa24.61■■□□□ 1.53
VPS35-202ENST00000561713 BRPF1P55201 1214 aaPredicted RBP24.61■■□□□ 1.53
VPS35-202ENST00000561713 ANKRD13DQ6ZTN6 518 aa24.61■■□□□ 1.53
VPS35-202ENST00000561713 TMC4Q7Z404 712 aa24.61■■□□□ 1.53
VPS35-202ENST00000561713 PSMD14O00487 310 aa24.6■■□□□ 1.53
VPS35-202ENST00000561713 CA12O43570 354 aa24.6■■□□□ 1.53
VPS35-202ENST00000561713 GNAI1P63096 354 aa24.6■■□□□ 1.53
VPS35-202ENST00000561713 CELF1Q92879 486 aaKnown RBP24.6■■□□□ 1.53
VPS35-202ENST00000561713 FAM89AQ96GI7 184 aa24.6■■□□□ 1.53
VPS35-202ENST00000561713 ISCA1Q9BUE6 129 aa24.6■■□□□ 1.53
VPS35-202ENST00000561713 PHAXQ9H814 394 aaKnown RBP24.6■■□□□ 1.53
VPS35-202ENST00000561713 HYPKQ9NX55 129 aa24.6■■□□□ 1.53
VPS35-202ENST00000561713 SPEF2Q9C093 1822 aa24.6■■□□□ 1.53
VPS35-202ENST00000561713 WASHC4Q2M389 1173 aa24.59■■□□□ 1.53
VPS35-202ENST00000561713 SAMD7Q7Z3H4 446 aa24.59■■□□□ 1.53
VPS35-202ENST00000561713 C8orf58Q8NAV2 365 aa24.59■■□□□ 1.53
VPS35-202ENST00000561713 ZIC5Q96T25 663 aa24.59■■□□□ 1.53
VPS35-202ENST00000561713 DBNDD1Q9H9R9 158 aa24.59■■□□□ 1.53
VPS35-202ENST00000561713 NSFL1CQ9UNZ2 370 aaKnown RBP24.59■■□□□ 1.53
VPS35-202ENST00000561713 RIMBP2O15034 1052 aa24.58■■□□□ 1.53
VPS35-202ENST00000561713 DPF2Q92785 391 aa24.58■■□□□ 1.53
VPS35-202ENST00000561713 POLLQ9UGP5 575 aa24.58■■□□□ 1.53
VPS35-202ENST00000561713 EGFRP00533 1210 aa24.57■■□□□ 1.52
VPS35-202ENST00000561713 SF3B3Q15393 1217 aaKnown RBP24.57■■□□□ 1.52
VPS35-202ENST00000561713 TBC1D10BQ4KMP7 808 aaPredicted RBP24.57■■□□□ 1.52
VPS35-202ENST00000561713 TSR2Q969E8 191 aaKnown RBP24.57■■□□□ 1.52
VPS35-202ENST00000561713 MCOLN1Q9GZU1 580 aa24.57■■□□□ 1.52
VPS35-202ENST00000561713 KCNQ5Q9NR82 932 aa24.57■■□□□ 1.52
VPS35-202ENST00000561713 C6orf229H3BNL8 230 aa24.56■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms