RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 DPP8Q6V1X1 898 aaPredicted RBP21.52■■□□□ 1.04
CLN3-208ENST00000561505 ZC3H15Q8WU90 426 aaKnown RBP21.52■■□□□ 1.04
CLN3-208ENST00000561505 ISCA1Q9BUE6 129 aa21.52■■□□□ 1.04
CLN3-208ENST00000561505 TRMT112Q9UI30 125 aaKnown RBP21.52■■□□□ 1.04
CLN3-208ENST00000561505 ABT1Q9ULW3 272 aaKnown RBP21.52■■□□□ 1.04
CLN3-208ENST00000561505 DUOX1Q9NRD9 1551 aa21.52■■□□□ 1.04
CLN3-208ENST00000561505 TRPM7Q96QT4 1865 aa21.52■■□□□ 1.03
CLN3-208ENST00000561505 TRAF5O00463 557 aa21.51■■□□□ 1.03
CLN3-208ENST00000561505 SF3B3Q15393 1217 aaKnown RBP21.51■■□□□ 1.03
CLN3-208ENST00000561505 CIAPIN1Q6FI81 312 aa21.51■■□□□ 1.03
CLN3-208ENST00000561505 DDX46Q7L014 1031 aaKnown RBP21.51■■□□□ 1.03
CLN3-208ENST00000561505 HHIPL1Q96JK4 782 aa21.51■■□□□ 1.03
CLN3-208ENST00000561505 CAPNS2Q96L46 248 aa21.51■■□□□ 1.03
CLN3-208ENST00000561505 LRRC37AA6NMS7 1700 aa21.51■■□□□ 1.03
CLN3-208ENST00000561505 ECE1P42892 770 aa21.5■■□□□ 1.03
CLN3-208ENST00000561505 GMPSP49915 693 aaPredicted RBP21.5■■□□□ 1.03
CLN3-208ENST00000561505 HIRAP54198 1017 aaPredicted RBP21.5■■□□□ 1.03
CLN3-208ENST00000561505 AIMP1Q12904 312 aaKnown RBP21.5■■□□□ 1.03
CLN3-208ENST00000561505 TRIM28Q13263 835 aaKnown RBP21.5■■□□□ 1.03
CLN3-208ENST00000561505 KRT24Q2M2I5 525 aa21.5■■□□□ 1.03
CLN3-208ENST00000561505 PLBD2Q8NHP8 589 aa21.5■■□□□ 1.03
CLN3-208ENST00000561505 MAP2K2P36507 400 aa21.49■■□□□ 1.03
CLN3-208ENST00000561505 TNIP1Q15025 636 aa21.49■■□□□ 1.03
CLN3-208ENST00000561505 RUNDC1Q96C34 613 aa21.49■■□□□ 1.03
CLN3-208ENST00000561505 MYBBP1AQ9BQG0 1328 aaKnown RBP21.49■■□□□ 1.03
CLN3-208ENST00000561505 YDJCA8MPS7 323 aa21.48■■□□□ 1.03
CLN3-208ENST00000561505 ANKRD13DQ6ZTN6 518 aa21.48■■□□□ 1.03
CLN3-208ENST00000561505 SAPCD2Q86UD0 394 aa21.48■■□□□ 1.03
CLN3-208ENST00000561505 NECTIN2Q92692 538 aa21.48■■□□□ 1.03
CLN3-208ENST00000561505 GPR101Q96P66 508 aaPredicted RBP21.48■■□□□ 1.03
CLN3-208ENST00000561505 CHPF2Q9P2E5 772 aa21.48■■□□□ 1.03
CLN3-208ENST00000561505 CYP4F22Q6NT55 531 aa21.47■■□□□ 1.03
CLN3-208ENST00000561505 DPF2Q92785 391 aa21.47■■□□□ 1.03
CLN3-208ENST00000561505 DBF4Q9UBU7 674 aaPredicted RBP21.47■■□□□ 1.03
CLN3-208ENST00000561505 DDX60Q8IY21 1712 aaKnown RBP21.46■■□□□ 1.03
CLN3-208ENST00000561505 CFAP44Q96MT7 982 aa21.46■■□□□ 1.03
CLN3-208ENST00000561505 RAD17O75943 681 aa21.45■■□□□ 1.02
CLN3-208ENST00000561505 ZNF853P0CG23 659 aa21.45■■□□□ 1.02
CLN3-208ENST00000561505 HDGFL1Q5TGJ6 251 aa21.45■■□□□ 1.02
CLN3-208ENST00000561505 TAF1P21675 1872 aa21.44■■□□□ 1.02
CLN3-208ENST00000561505 GLIS2Q9BZE0 524 aaPredicted RBP21.44■■□□□ 1.02
CLN3-208ENST00000561505 HYPKQ9NX55 129 aa21.44■■□□□ 1.02
CLN3-208ENST00000561505 CNOT7Q9UIV1 285 aaKnown RBP21.44■■□□□ 1.02
CLN3-208ENST00000561505 NEUROD2Q15784 382 aa21.43■■□□□ 1.02
CLN3-208ENST00000561505 CDC37L1Q7L3B6 337 aa21.43■■□□□ 1.02
CLN3-208ENST00000561505 CCDC146Q8IYE0 955 aa21.43■■□□□ 1.02
CLN3-208ENST00000561505 TRPM4Q8TD43 1214 aa21.43■■□□□ 1.02
CLN3-208ENST00000561505 CELF1Q92879 486 aaKnown RBP21.43■■□□□ 1.02
CLN3-208ENST00000561505 FAM89AQ96GI7 184 aa21.43■■□□□ 1.02
CLN3-208ENST00000561505 ADAMTS8Q9UP79 889 aa21.43■■□□□ 1.02
CLN3-208ENST00000561505 CELF2O95319 508 aaKnown RBP21.42■■□□□ 1.02
CLN3-208ENST00000561505 ABHD8Q96I13 439 aa21.42■■□□□ 1.02
CLN3-208ENST00000561505 COL4A1P02462 1669 aa21.41■■□□□ 1.02
CLN3-208ENST00000561505 WASHC4Q2M389 1173 aa21.41■■□□□ 1.02
CLN3-208ENST00000561505 BCL2L13Q9BXK5 485 aa21.41■■□□□ 1.02
CLN3-208ENST00000561505 POLLQ9UGP5 575 aa21.41■■□□□ 1.02
CLN3-208ENST00000561505 CA12O43570 354 aa21.4■■□□□ 1.02
CLN3-208ENST00000561505 DUSP27Q5VZP5 1158 aa21.4■■□□□ 1.02
CLN3-208ENST00000561505 PODXL2Q9NZ53 605 aa21.4■■□□□ 1.02
CLN3-208ENST00000561505 SHTN1A0MZ66 631 aa21.39■■□□□ 1.01
CLN3-208ENST00000561505 H7C1D1 291 aa21.39■■□□□ 1.01
CLN3-208ENST00000561505 AOC2O75106 756 aa21.39■■□□□ 1.01
CLN3-208ENST00000561505 RPS12P25398 132 aaKnown RBP21.39■■□□□ 1.01
CLN3-208ENST00000561505 BRPF1P55201 1214 aaPredicted RBP21.39■■□□□ 1.01
CLN3-208ENST00000561505 ATP5J2-PTCD1G3V325 749 aa21.38■■□□□ 1.01
CLN3-208ENST00000561505 PSMD14O00487 310 aa21.38■■□□□ 1.01
CLN3-208ENST00000561505 RPS8P62241 208 aaKnown RBP21.38■■□□□ 1.01
CLN3-208ENST00000561505 GPSM2P81274 684 aa21.38■■□□□ 1.01
CLN3-208ENST00000561505 DDX10Q13206 875 aaKnown RBP21.38■■□□□ 1.01
CLN3-208ENST00000561505 MICALL2Q8IY33 904 aa21.38■■□□□ 1.01
CLN3-208ENST00000561505 BEGAINQ9BUH8 593 aa21.38■■□□□ 1.01
CLN3-208ENST00000561505 MBIPQ9NS73 344 aa21.38■■□□□ 1.01
CLN3-208ENST00000561505 NSFL1CQ9UNZ2 370 aaKnown RBP21.38■■□□□ 1.01
CLN3-208ENST00000561505 ZNF609O15014 1411 aa21.38■■□□□ 1.01
CLN3-208ENST00000561505 IRS4O14654 1257 aaPredicted RBP21.37■■□□□ 1.01
CLN3-208ENST00000561505 WDR43Q15061 677 aaKnown RBP eCLIP21.37■■□□□ 1.01
CLN3-208ENST00000561505 ZBTB38Q8NAP3 1195 aaPredicted RBP21.37■■□□□ 1.01
CLN3-208ENST00000561505 TBC1D16Q8TBP0 767 aa21.37■■□□□ 1.01
CLN3-208ENST00000561505 ZBTB12Q9Y330 459 aaPredicted RBP21.37■■□□□ 1.01
CLN3-208ENST00000561505 LAS1LQ9Y4W2 734 aaKnown RBP21.37■■□□□ 1.01
CLN3-208ENST00000561505 RTL9Q8NET4 1388 aa21.36■■□□□ 1.01
CLN3-208ENST00000561505 RGS19P49795 217 aa21.36■■□□□ 1.01
CLN3-208ENST00000561505 VIL1P09327 827 aaKnown RBP21.35■■□□□ 1.01
CLN3-208ENST00000561505 PAXIP1Q6ZW49 1069 aaPredicted RBP21.35■■□□□ 1.01
CLN3-208ENST00000561505 EYA3Q99504 573 aa21.35■■□□□ 1.01
CLN3-208ENST00000561505 DBNDD1Q9H9R9 158 aa21.35■■□□□ 1.01
CLN3-208ENST00000561505 KCNQ5Q9NR82 932 aa21.35■■□□□ 1.01
CLN3-208ENST00000561505 IFT57Q9NWB7 429 aa21.35■■□□□ 1.01
CLN3-208ENST00000561505 EGFRP00533 1210 aa21.34■■□□□ 1.01
CLN3-208ENST00000561505 SAMD7Q7Z3H4 446 aa21.34■■□□□ 1.01
CLN3-208ENST00000561505 USP48Q86UV5 1035 aa21.34■■□□□ 1.01
CLN3-208ENST00000561505 C6orf229H3BNL8 230 aa21.33■■□□□ 1.01
CLN3-208ENST00000561505 ECE2O60344 883 aa21.33■■□□□ 1.01
CLN3-208ENST00000561505 HSP90B1P14625 803 aaKnown RBP21.33■■□□□ 1.01
CLN3-208ENST00000561505 NOGQ13253 232 aa21.33■■□□□ 1.01
CLN3-208ENST00000561505 CCDC191Q8NCU4 936 aa21.33■■□□□ 1.01
CLN3-208ENST00000561505 ZNF428Q96B54 188 aa21.33■■□□□ 1.01
CLN3-208ENST00000561505 PRKRIP1Q9H875 184 aaPredicted RBP21.33■■□□□ 1.01
CLN3-208ENST00000561505 PCCAP05165 728 aaPredicted RBP21.32■■□□□ 1
CLN3-208ENST00000561505 PHAXQ9H814 394 aaKnown RBP21.32■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms