RNA–Protein interactions for RNA: ENST00000560448.5

PKNOX1-209, Transcript of PBX/knotted 1 homeobox 1, humanhuman

TSL 5

Gene PKNOX1, Length 1,429 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1-209ENST00000560448 GRAPLQ8TC17 118 aaPredicted RBP17.64■□□□□ 0.42
PKNOX1-209ENST00000560448 ABCC4O15439 1325 aa17.64■□□□□ 0.41
PKNOX1-209ENST00000560448 LTBP3Q9NS15 1303 aa17.64■□□□□ 0.41
PKNOX1-209ENST00000560448 MS4A1P11836 297 aa17.64■□□□□ 0.41
PKNOX1-209ENST00000560448 CTSWP56202 376 aa17.64■□□□□ 0.41
PKNOX1-209ENST00000560448 CCDC93Q567U6 631 aa17.64■□□□□ 0.41
PKNOX1-209ENST00000560448 RTKN2Q8IZC4 609 aa17.64■□□□□ 0.41
PKNOX1-209ENST00000560448 C7orf43Q8WVR3 580 aa17.64■□□□□ 0.41
PKNOX1-209ENST00000560448 SLX4Q8IY92 1834 aa17.63■□□□□ 0.41
PKNOX1-209ENST00000560448 GOLGB1Q14789 3259 aaKnown RBP17.63■□□□□ 0.41
PKNOX1-209ENST00000560448 BCAR3O75815 825 aa17.63■□□□□ 0.41
PKNOX1-209ENST00000560448 C3orf67Q6ZVT6 689 aa17.63■□□□□ 0.41
PKNOX1-209ENST00000560448 PPEF1O14829 653 aaPredicted RBP17.62■□□□□ 0.41
PKNOX1-209ENST00000560448 TRIM27P14373 513 aa17.62■□□□□ 0.41
PKNOX1-209ENST00000560448 INTS3Q68E01 1043 aaKnown RBP17.62■□□□□ 0.41
PKNOX1-209ENST00000560448 ARHGAP27Q6ZUM4 889 aa17.62■□□□□ 0.41
PKNOX1-209ENST00000560448 CDC5LQ99459 802 aaKnown RBP17.62■□□□□ 0.41
PKNOX1-209ENST00000560448 RCAN3Q9UKA8 241 aa17.62■□□□□ 0.41
PKNOX1-209ENST00000560448 WWC3Q9ULE0 1092 aa17.62■□□□□ 0.41
PKNOX1-209ENST00000560448 CACNA1SQ13698 1873 aa17.61■□□□□ 0.41
PKNOX1-209ENST00000560448 C21orf2O43822 256 aa17.61■□□□□ 0.41
PKNOX1-209ENST00000560448 CSF1RP07333 972 aa17.61■□□□□ 0.41
PKNOX1-209ENST00000560448 TTLL11Q8NHH1 800 aa17.61■□□□□ 0.41
PKNOX1-209ENST00000560448 FRAT1Q92837 279 aaPredicted RBP17.61■□□□□ 0.41
PKNOX1-209ENST00000560448 ATP6V0A2Q9Y487 856 aa17.61■□□□□ 0.41
PKNOX1-209ENST00000560448 SUPT16HQ9Y5B9 1047 aaKnown RBP17.61■□□□□ 0.41
PKNOX1-209ENST00000560448 FER1L6Q2WGJ9 1857 aa17.6■□□□□ 0.41
PKNOX1-209ENST00000560448 SP8Q8IXZ3 490 aa17.6■□□□□ 0.41
PKNOX1-209ENST00000560448 TAOK3Q9H2K8 898 aa17.6■□□□□ 0.41
PKNOX1-209ENST00000560448 ZC3H4Q9UPT8 1303 aaKnown RBP17.6■□□□□ 0.41
PKNOX1-209ENST00000560448 RPS8P62241 208 aaKnown RBP17.59■□□□□ 0.41
PKNOX1-209ENST00000560448 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.59■□□□□ 0.41
PKNOX1-209ENST00000560448 PSMD1Q99460 953 aa17.59■□□□□ 0.41
PKNOX1-209ENST00000560448 VPS33BQ9H267 617 aa17.59■□□□□ 0.41
PKNOX1-209ENST00000560448 FTSJ3Q8IY81 847 aaKnown RBP17.58■□□□□ 0.41
PKNOX1-209ENST00000560448 USP44Q9H0E7 712 aa17.58■□□□□ 0.41
PKNOX1-209ENST00000560448 UTRNP46939 3433 aa17.58■□□□□ 0.4
PKNOX1-209ENST00000560448 GNAI3P08754 354 aa17.57■□□□□ 0.4
PKNOX1-209ENST00000560448 LMNB1P20700 586 aa17.57■□□□□ 0.4
PKNOX1-209ENST00000560448 FKBP4Q02790 459 aaKnown RBP eCLIP17.57■□□□□ 0.4
PKNOX1-209ENST00000560448 ANKRD18AQ8IVF6 992 aa17.57■□□□□ 0.4
PKNOX1-209ENST00000560448 SUPT20HQ8NEM7 779 aa17.57■□□□□ 0.4
PKNOX1-209ENST00000560448 SNED1Q8TER0 1413 aa17.57■□□□□ 0.4
PKNOX1-209ENST00000560448 LRRC37AA6NMS7 1700 aa17.57■□□□□ 0.4
PKNOX1-209ENST00000560448 NBPF7P0C2Y1 421 aaPredicted RBP17.56■□□□□ 0.4
PKNOX1-209ENST00000560448 UBTFL1P0CB47 393 aaPredicted RBP17.56■□□□□ 0.4
PKNOX1-209ENST00000560448 FOXO4P98177 505 aa17.56■□□□□ 0.4
PKNOX1-209ENST00000560448 RABL6Q3YEC7 729 aaPredicted RBP17.56■□□□□ 0.4
PKNOX1-209ENST00000560448 DZIP1LQ8IYY4 767 aaKnown RBP17.56■□□□□ 0.4
PKNOX1-209ENST00000560448 JARID2Q92833 1246 aaPredicted RBP17.56■□□□□ 0.4
PKNOX1-209ENST00000560448 NFKBIEO00221 500 aa17.55■□□□□ 0.4
PKNOX1-209ENST00000560448 YY1P25490 414 aa17.55■□□□□ 0.4
PKNOX1-209ENST00000560448 IGHMBP2P38935 993 aaKnown RBP17.55■□□□□ 0.4
PKNOX1-209ENST00000560448 IFIT5Q13325 482 aaKnown RBP17.55■□□□□ 0.4
PKNOX1-209ENST00000560448 CELF1Q92879 486 aaKnown RBP17.55■□□□□ 0.4
PKNOX1-209ENST00000560448 GREM2Q9H772 168 aa17.55■□□□□ 0.4
PKNOX1-209ENST00000560448 ANKRD18BA2A2Z9 1011 aa17.55■□□□□ 0.4
PKNOX1-209ENST00000560448 ITGA6P23229 1130 aa17.55■□□□□ 0.4
PKNOX1-209ENST00000560448 CCDC57Q2TAC2 916 aa17.55■□□□□ 0.4
PKNOX1-209ENST00000560448 CHMP4BQ9H444 224 aaKnown RBP17.55■□□□□ 0.4
PKNOX1-209ENST00000560448 BSDC1Q9NW68 430 aaPredicted RBP17.55■□□□□ 0.4
PKNOX1-209ENST00000560448 SBF1O95248 1867 aa17.54■□□□□ 0.4
PKNOX1-209ENST00000560448 LMBR1LQ6UX01 489 aa17.54■□□□□ 0.4
PKNOX1-209ENST00000560448 RTFDC1Q9BY42 306 aaPredicted RBP17.54■□□□□ 0.4
PKNOX1-209ENST00000560448 ZNF219Q9P2Y4 722 aaPredicted RBP17.54■□□□□ 0.4
PKNOX1-209ENST00000560448 FAM161AQ3B820 660 aa17.53■□□□□ 0.4
PKNOX1-209ENST00000560448 DPP8Q6V1X1 898 aaPredicted RBP17.53■□□□□ 0.4
PKNOX1-209ENST00000560448 MPNDQ8N594 471 aa17.53■□□□□ 0.4
PKNOX1-209ENST00000560448 SUCLG2Q96I99 432 aa17.53■□□□□ 0.4
PKNOX1-209ENST00000560448 MPHOSPH8Q99549 860 aa17.53■□□□□ 0.4
PKNOX1-209ENST00000560448 SEC31BQ9NQW1 1179 aa17.53■□□□□ 0.4
PKNOX1-209ENST00000560448 PODXL2Q9NZ53 605 aa17.53■□□□□ 0.4
PKNOX1-209ENST00000560448 NEFLP07196 543 aa17.52■□□□□ 0.4
PKNOX1-209ENST00000560448 C9orf131Q5VYM1 1079 aa17.52■□□□□ 0.4
PKNOX1-209ENST00000560448 CLUAP1Q96AJ1 413 aa17.52■□□□□ 0.4
PKNOX1-209ENST00000560448 KAZALD1Q96I82 304 aa17.52■□□□□ 0.4
PKNOX1-209ENST00000560448 BICC1Q9H694 974 aaKnown RBP17.52■□□□□ 0.4
PKNOX1-209ENST00000560448 DICER1Q9UPY3 1922 aaKnown RBP17.52■□□□□ 0.39
PKNOX1-209ENST00000560448 PDE3AQ14432 1141 aa17.51■□□□□ 0.39
PKNOX1-209ENST00000560448 CCDC85AQ96PX6 553 aaPredicted RBP17.51■□□□□ 0.39
PKNOX1-209ENST00000560448 RNF181Q9P0P0 153 aa17.51■□□□□ 0.39
PKNOX1-209ENST00000560448 CHMP3Q9Y3E7 222 aa17.51■□□□□ 0.39
PKNOX1-209ENST00000560448 RASSF7Q02833 373 aa17.5■□□□□ 0.39
PKNOX1-209ENST00000560448 TAF7LQ5H9L4 462 aa17.5■□□□□ 0.39
PKNOX1-209ENST00000560448 TMEM57Q8N5G2 664 aa17.5■□□□□ 0.39
PKNOX1-209ENST00000560448 EYA3Q99504 573 aa17.5■□□□□ 0.39
PKNOX1-209ENST00000560448 ANKRD2Q9GZV1 360 aa17.5■□□□□ 0.39
PKNOX1-209ENST00000560448 TAF1P21675 1872 aa17.5■□□□□ 0.39
PKNOX1-209ENST00000560448 XDHP47989 1333 aa17.5■□□□□ 0.39
PKNOX1-209ENST00000560448 IARSP41252 1262 aaKnown RBP17.49■□□□□ 0.39
PKNOX1-209ENST00000560448 EPHA10Q5JZY3 1008 aa17.49■□□□□ 0.39
PKNOX1-209ENST00000560448 MEIS3Q99687 375 aa17.49■□□□□ 0.39
PKNOX1-209ENST00000560448 FBXO3Q9UK99 471 aa17.49■□□□□ 0.39
PKNOX1-209ENST00000560448 NSFL1CQ9UNZ2 370 aaKnown RBP17.49■□□□□ 0.39
PKNOX1-209ENST00000560448 LTBP1Q14766 1721 aa17.49■□□□□ 0.39
PKNOX1-209ENST00000560448 GNAI2P04899 355 aa17.48■□□□□ 0.39
PKNOX1-209ENST00000560448 ITPRIPQ8IWB1 547 aa17.48■□□□□ 0.39
PKNOX1-209ENST00000560448 ANKRD44Q8N8A2 993 aa17.48■□□□□ 0.39
PKNOX1-209ENST00000560448 JDP2Q8WYK2 163 aa17.48■□□□□ 0.39
PKNOX1-209ENST00000560448 DDX19BQ9UMR2 479 aa17.48■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms