RNA–Protein interactions for RNA: ENST00000560447.1

RTF1-206, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 3

Gene RTF1, Length 551 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-206ENST00000560447 JCADQ9P266 1359 aa11.71□□□□□ -0.53
RTF1-206ENST00000560447 H7C1W4 665 aa11.71□□□□□ -0.53
RTF1-206ENST00000560447 SSFA2P28290 1259 aa11.71□□□□□ -0.53
RTF1-206ENST00000560447 RFX5P48382 616 aaPredicted RBP11.71□□□□□ -0.53
RTF1-206ENST00000560447 LCE2DQ5TA82 110 aaPredicted RBP11.71□□□□□ -0.53
RTF1-206ENST00000560447 CCDC191Q8NCU4 936 aa11.71□□□□□ -0.53
RTF1-206ENST00000560447 ANKRD36CQ5JPF3 1778 aa11.71□□□□□ -0.54
RTF1-206ENST00000560447 ZNF335Q9H4Z2 1342 aaPredicted RBP11.7□□□□□ -0.54
RTF1-206ENST00000560447 ATP5JP18859 108 aa11.7□□□□□ -0.54
RTF1-206ENST00000560447 EAF2Q96CJ1 260 aaPredicted RBP11.7□□□□□ -0.54
RTF1-206ENST00000560447 ZSCAN31Q96LW9 406 aaPredicted RBP11.7□□□□□ -0.54
RTF1-206ENST00000560447 PALD1Q9ULE6 856 aa11.7□□□□□ -0.54
RTF1-206ENST00000560447 PA2G4Q9UQ80 394 aaKnown RBP11.7□□□□□ -0.54
RTF1-206ENST00000560447 SNX14Q9Y5W7 946 aa11.7□□□□□ -0.54
RTF1-206ENST00000560447 CICQ96RK0 1608 aaPredicted RBP11.7□□□□□ -0.54
RTF1-206ENST00000560447 DISP2A7MBM2 1401 aa11.69□□□□□ -0.54
RTF1-206ENST00000560447 PTPN12Q05209 780 aaKnown RBP11.69□□□□□ -0.54
RTF1-206ENST00000560447 TRIM28Q13263 835 aaKnown RBP11.69□□□□□ -0.54
RTF1-206ENST00000560447 TTC14Q96N46 770 aa11.69□□□□□ -0.54
RTF1-206ENST00000560447 ALDH8A1Q9H2A2 487 aaPredicted RBP11.69□□□□□ -0.54
RTF1-206ENST00000560447 CWC25Q9NXE8 425 aaPredicted RBP11.69□□□□□ -0.54
RTF1-206ENST00000560447 HMG20BQ9P0W2 317 aa11.69□□□□□ -0.54
RTF1-206ENST00000560447 MED23Q9ULK4 1368 aa11.68□□□□□ -0.54
RTF1-206ENST00000560447 CCDC171Q6TFL3 1326 aa11.68□□□□□ -0.54
RTF1-206ENST00000560447 A0A087WZG4 1122 aa11.68□□□□□ -0.54
RTF1-206ENST00000560447 KDM4FA0A1W2PPD8 638 aa11.68□□□□□ -0.54
RTF1-206ENST00000560447 BRD1O95696 1058 aa11.68□□□□□ -0.54
RTF1-206ENST00000560447 ZKSCAN1P17029 563 aaPredicted RBP11.68□□□□□ -0.54
RTF1-206ENST00000560447 EVA1CP58658 441 aa11.68□□□□□ -0.54
RTF1-206ENST00000560447 MKRN3Q13064 507 aaKnown RBP11.68□□□□□ -0.54
RTF1-206ENST00000560447 TSGA10IPQ3SY00 556 aa11.68□□□□□ -0.54
RTF1-206ENST00000560447 VPS53Q5VIR6 699 aa11.68□□□□□ -0.54
RTF1-206ENST00000560447 RNF20Q5VTR2 975 aa11.68□□□□□ -0.54
RTF1-206ENST00000560447 SH2B1Q9NRF2 756 aaPredicted RBP11.68□□□□□ -0.54
RTF1-206ENST00000560447 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.68□□□□□ -0.54
RTF1-206ENST00000560447 WDR33Q9C0J8 1336 aaKnown RBP11.67□□□□□ -0.54
RTF1-206ENST00000560447 NBPF26B4DH59 902 aa11.67□□□□□ -0.54
RTF1-206ENST00000560447 CIAO1O76071 339 aa11.67□□□□□ -0.54
RTF1-206ENST00000560447 MBD3O95983 291 aa11.67□□□□□ -0.54
RTF1-206ENST00000560447 PSMA5P28066 241 aa11.67□□□□□ -0.54
RTF1-206ENST00000560447 TNNI3KQ59H18 835 aa11.67□□□□□ -0.54
RTF1-206ENST00000560447 NBPF14Q5TI25 921 aa11.67□□□□□ -0.54
RTF1-206ENST00000560447 NBPF10Q6P3W6 841 aaKnown RBP11.67□□□□□ -0.54
RTF1-206ENST00000560447 CWC27Q6UX04 472 aaKnown RBP11.67□□□□□ -0.54
RTF1-206ENST00000560447 UBE3BQ7Z3V4 1068 aa11.67□□□□□ -0.54
RTF1-206ENST00000560447 NBPF15Q8N660 670 aa11.67□□□□□ -0.54
RTF1-206ENST00000560447 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.67□□□□□ -0.54
RTF1-206ENST00000560447 MAP4K1Q92918 833 aa11.67□□□□□ -0.54
RTF1-206ENST00000560447 RNF25Q96BH1 459 aaPredicted RBP11.67□□□□□ -0.54
RTF1-206ENST00000560447 LIMCH1Q9UPQ0 1083 aa11.67□□□□□ -0.54
RTF1-206ENST00000560447 FPGT-TNNI3KV9GXZ4 949 aa11.67□□□□□ -0.54
RTF1-206ENST00000560447 MYH3P11055 1940 aa11.66□□□□□ -0.54
RTF1-206ENST00000560447 ROBO1Q9Y6N7 1651 aa11.66□□□□□ -0.54
RTF1-206ENST00000560447 IL15P40933 162 aaPredicted RBP11.66□□□□□ -0.54
RTF1-206ENST00000560447 NECTIN1Q15223 517 aa11.66□□□□□ -0.54
RTF1-206ENST00000560447 ANKRD1Q15327 319 aa11.66□□□□□ -0.54
RTF1-206ENST00000560447 EPHA10Q5JZY3 1008 aa11.66□□□□□ -0.54
RTF1-206ENST00000560447 ZGPATQ8N5A5 531 aaKnown RBP11.66□□□□□ -0.54
RTF1-206ENST00000560447 ISCA1Q9BUE6 129 aa11.66□□□□□ -0.54
RTF1-206ENST00000560447 CDCA7Q9BWT1 371 aaPredicted RBP11.66□□□□□ -0.54
RTF1-206ENST00000560447 PLA2G12BQ9BX93 195 aa11.66□□□□□ -0.54
RTF1-206ENST00000560447 IL25Q9H293 177 aa11.66□□□□□ -0.54
RTF1-206ENST00000560447 ZSWIM6Q9HCJ5 1215 aa11.66□□□□□ -0.54
RTF1-206ENST00000560447 TMOD3Q9NYL9 352 aa11.66□□□□□ -0.54
RTF1-206ENST00000560447 DDX49Q9Y6V7 483 aaKnown RBP11.66□□□□□ -0.54
RTF1-206ENST00000560447 COL16A1Q07092 1604 aaPredicted RBP11.66□□□□□ -0.54
RTF1-206ENST00000560447 PALLDQ8WX93 1383 aa11.66□□□□□ -0.54
RTF1-206ENST00000560447 ABCC12Q96J65 1359 aa11.66□□□□□ -0.54
RTF1-206ENST00000560447 RPAP1Q9BWH6 1393 aaPredicted RBP11.66□□□□□ -0.54
RTF1-206ENST00000560447 MAP4K4O95819 1239 aaPredicted RBP11.65□□□□□ -0.54
RTF1-206ENST00000560447 ZNF445P59923 1031 aa11.65□□□□□ -0.54
RTF1-206ENST00000560447 FOXO4P98177 505 aa11.65□□□□□ -0.54
RTF1-206ENST00000560447 KRT32Q14532 448 aa11.65□□□□□ -0.54
RTF1-206ENST00000560447 HSP90AB3PQ58FF7 597 aa11.65□□□□□ -0.54
RTF1-206ENST00000560447 FSD1Q9BTV5 496 aa11.65□□□□□ -0.54
RTF1-206ENST00000560447 CCDC8Q9H0W5 538 aaPredicted RBP11.65□□□□□ -0.54
RTF1-206ENST00000560447 LMBRD1Q9NUN5 540 aa11.65□□□□□ -0.54
RTF1-206ENST00000560447 ZDHHC9Q9Y397 364 aa11.65□□□□□ -0.54
RTF1-206ENST00000560447 CYP46A1Q9Y6A2 500 aa11.65□□□□□ -0.54
RTF1-206ENST00000560447 NRAPQ86VF7 1730 aa11.64□□□□□ -0.55
RTF1-206ENST00000560447 NWD2Q9ULI1 1742 aa11.64□□□□□ -0.55
RTF1-206ENST00000560447 STARD3NLO95772 234 aa11.64□□□□□ -0.55
RTF1-206ENST00000560447 NMIQ13287 307 aaPredicted RBP11.64□□□□□ -0.55
RTF1-206ENST00000560447 TCIRG1Q13488 830 aa11.64□□□□□ -0.55
RTF1-206ENST00000560447 LRRFIP1Q32MZ4 808 aaKnown RBP11.64□□□□□ -0.55
RTF1-206ENST00000560447 USPL1Q5W0Q7 1092 aa11.64□□□□□ -0.55
RTF1-206ENST00000560447 HAUS7Q99871 368 aa11.64□□□□□ -0.55
RTF1-206ENST00000560447 GRPEL1Q9HAV7 217 aa11.64□□□□□ -0.55
RTF1-206ENST00000560447 ATP6V1DQ9Y5K8 247 aa11.64□□□□□ -0.55
RTF1-206ENST00000560447 RREB1Q92766 1687 aa11.64□□□□□ -0.55
RTF1-206ENST00000560447 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.63□□□□□ -0.55
RTF1-206ENST00000560447 SH3TC1Q8TE82 1336 aa11.63□□□□□ -0.55
RTF1-206ENST00000560447 CDHR2Q9BYE9 1310 aa11.63□□□□□ -0.55
RTF1-206ENST00000560447 BCL9O00512 1426 aa11.63□□□□□ -0.55
RTF1-206ENST00000560447 ZNF609O15014 1411 aa11.63□□□□□ -0.55
RTF1-206ENST00000560447 ZNF831Q5JPB2 1677 aa11.63□□□□□ -0.55
RTF1-206ENST00000560447 PCCAP05165 728 aaPredicted RBP11.63□□□□□ -0.55
RTF1-206ENST00000560447 XRCC6P12956 609 aaKnown RBP eCLIP11.63□□□□□ -0.55
RTF1-206ENST00000560447 AK2P54819 239 aa11.63□□□□□ -0.55
RTF1-206ENST00000560447 CREB3L3Q68CJ9 461 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms