RNA–Protein interactions for RNA: ENST00000560320.1

CRTC3-209, Transcript of CREB regulated transcription coactivator 3, humanhuman

TSL 4

Gene CRTC3, Length 554 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CRTC3-209ENST00000560320 PDE1AP54750 535 aa13.03□□□□□ -0.32
CRTC3-209ENST00000560320 KCNQ4P56696 695 aa13.03□□□□□ -0.32
CRTC3-209ENST00000560320 SIL1Q9H173 461 aa13.03□□□□□ -0.32
CRTC3-209ENST00000560320 NIP7Q9Y221 180 aaKnown RBP eCLIP13.03□□□□□ -0.32
CRTC3-209ENST00000560320 IRS4O14654 1257 aaPredicted RBP13.02□□□□□ -0.33
CRTC3-209ENST00000560320 ERC2O15083 957 aa13.02□□□□□ -0.33
CRTC3-209ENST00000560320 CDC45O75419 566 aa13.02□□□□□ -0.33
CRTC3-209ENST00000560320 STAP2Q9UGK3 403 aa13.02□□□□□ -0.33
CRTC3-209ENST00000560320 NARFQ9UHQ1 456 aa13.02□□□□□ -0.33
CRTC3-209ENST00000560320 SH3TC1Q8TE82 1336 aa13.02□□□□□ -0.33
CRTC3-209ENST00000560320 TUBGCP6Q96RT7 1819 aa13.02□□□□□ -0.33
CRTC3-209ENST00000560320 UBR3Q6ZT12 1888 aa13.02□□□□□ -0.33
CRTC3-209ENST00000560320 ADRA2BP18089 450 aa13.01□□□□□ -0.33
CRTC3-209ENST00000560320 RFC4P35249 363 aa13.01□□□□□ -0.33
CRTC3-209ENST00000560320 RFX5P48382 616 aaPredicted RBP13.01□□□□□ -0.33
CRTC3-209ENST00000560320 PTPN12Q05209 780 aaKnown RBP13.01□□□□□ -0.33
CRTC3-209ENST00000560320 IFIT5Q13325 482 aaKnown RBP13.01□□□□□ -0.33
CRTC3-209ENST00000560320 TRAPPC3LQ5T215 181 aa13.01□□□□□ -0.33
CRTC3-209ENST00000560320 COL13A1Q5TAT6 717 aaPredicted RBP13.01□□□□□ -0.33
CRTC3-209ENST00000560320 NUTM1Q86Y26 1132 aa13.01□□□□□ -0.33
CRTC3-209ENST00000560320 OTUD7AQ8TE49 926 aaPredicted RBP13.01□□□□□ -0.33
CRTC3-209ENST00000560320 NYXQ9GZU5 481 aa13.01□□□□□ -0.33
CRTC3-209ENST00000560320 ANO8Q9HCE9 1232 aaPredicted RBP13.01□□□□□ -0.33
CRTC3-209ENST00000560320 FBXO3Q9UK99 471 aa13.01□□□□□ -0.33
CRTC3-209ENST00000560320 C4AP0C0L4 1744 aa13.01□□□□□ -0.33
CRTC3-209ENST00000560320 TTC41PQ6P2S7 1318 aa13□□□□□ -0.33
CRTC3-209ENST00000560320 UBN2Q6ZU65 1347 aa13□□□□□ -0.33
CRTC3-209ENST00000560320 ANKRD18BA2A2Z9 1011 aa13□□□□□ -0.33
CRTC3-209ENST00000560320 FAM177BA6PVY3 158 aa13□□□□□ -0.33
CRTC3-209ENST00000560320 GTF2E1P29083 439 aaPredicted RBP13□□□□□ -0.33
CRTC3-209ENST00000560320 IL15P40933 162 aaPredicted RBP13□□□□□ -0.33
CRTC3-209ENST00000560320 CTSWP56202 376 aa13□□□□□ -0.33
CRTC3-209ENST00000560320 AACSQ86V21 672 aa13□□□□□ -0.33
CRTC3-209ENST00000560320 DDX60Q8IY21 1712 aaKnown RBP12.99□□□□□ -0.33
CRTC3-209ENST00000560320 TRIM6-TRIM34B2RNG4 842 aa12.99□□□□□ -0.33
CRTC3-209ENST00000560320 CIAO1O76071 339 aa12.99□□□□□ -0.33
CRTC3-209ENST00000560320 CSF1RP07333 972 aa12.99□□□□□ -0.33
CRTC3-209ENST00000560320 SUSD4Q5VX71 490 aa12.99□□□□□ -0.33
CRTC3-209ENST00000560320 USPL1Q5W0Q7 1092 aa12.99□□□□□ -0.33
CRTC3-209ENST00000560320 SETDB2Q96T68 719 aa12.99□□□□□ -0.33
CRTC3-209ENST00000560320 ATF5Q9Y2D1 282 aaPredicted RBP12.99□□□□□ -0.33
CRTC3-209ENST00000560320 PCNTO95613 3336 aa12.99□□□□□ -0.33
CRTC3-209ENST00000560320 SALL3Q9BXA9 1300 aa12.98□□□□□ -0.33
CRTC3-209ENST00000560320 EYA2O00167 538 aa12.98□□□□□ -0.33
CRTC3-209ENST00000560320 PLSCR1O15162 318 aa12.98□□□□□ -0.33
CRTC3-209ENST00000560320 GLRX3O76003 335 aaKnown RBP12.98□□□□□ -0.33
CRTC3-209ENST00000560320 PHF14O94880 888 aa12.98□□□□□ -0.33
CRTC3-209ENST00000560320 SASH1O94885 1247 aa12.98□□□□□ -0.33
CRTC3-209ENST00000560320 GSPT1P15170 499 aaKnown RBP12.98□□□□□ -0.33
CRTC3-209ENST00000560320 KLHDC4Q8TBB5 520 aa12.98□□□□□ -0.33
CRTC3-209ENST00000560320 ECHDC1Q9NTX5 307 aa12.98□□□□□ -0.33
CRTC3-209ENST00000560320 CEP126Q9P2H0 1117 aa12.98□□□□□ -0.33
CRTC3-209ENST00000560320 COL24A1Q17RW2 1714 aa12.98□□□□□ -0.33
CRTC3-209ENST00000560320 USP42Q9H9J4 1324 aaKnown RBP12.97□□□□□ -0.33
CRTC3-209ENST00000560320 NPHP1O15259 732 aa12.97□□□□□ -0.33
CRTC3-209ENST00000560320 SDSP20132 328 aa12.97□□□□□ -0.33
CRTC3-209ENST00000560320 SSFA2P28290 1259 aa12.97□□□□□ -0.33
CRTC3-209ENST00000560320 MFAP1P55081 439 aaKnown RBP12.97□□□□□ -0.33
CRTC3-209ENST00000560320 GPR162Q16538 588 aa12.97□□□□□ -0.33
CRTC3-209ENST00000560320 TXNRD1Q16881 649 aa12.97□□□□□ -0.33
CRTC3-209ENST00000560320 CCDC152Q4G0S7 254 aa12.97□□□□□ -0.33
CRTC3-209ENST00000560320 BICDL1Q6ZP65 573 aa12.97□□□□□ -0.33
CRTC3-209ENST00000560320 CNTROBQ8N137 903 aa12.97□□□□□ -0.33
CRTC3-209ENST00000560320 TTLL11Q8NHH1 800 aa12.97□□□□□ -0.33
CRTC3-209ENST00000560320 ARHGEF1Q92888 912 aaKnown RBP12.97□□□□□ -0.33
CRTC3-209ENST00000560320 RILPL2Q969X0 211 aa12.97□□□□□ -0.33
CRTC3-209ENST00000560320 DDRGK1Q96HY6 314 aa12.97□□□□□ -0.33
CRTC3-209ENST00000560320 SGIP1Q9BQI5 828 aa12.97□□□□□ -0.33
CRTC3-209ENST00000560320 GPR108Q9NPR9 543 aa12.97□□□□□ -0.33
CRTC3-209ENST00000560320 AKAP2Q9Y2D5 859 aa12.97□□□□□ -0.33
CRTC3-209ENST00000560320 NTSR2O95665 410 aa12.96□□□□□ -0.33
CRTC3-209ENST00000560320 ITGA6P23229 1130 aa12.96□□□□□ -0.33
CRTC3-209ENST00000560320 TFCP2Q12800 502 aa12.96□□□□□ -0.33
CRTC3-209ENST00000560320 TNNI3KQ59H18 835 aa12.96□□□□□ -0.33
CRTC3-209ENST00000560320 TBC1D9Q6ZT07 1266 aa12.96□□□□□ -0.33
CRTC3-209ENST00000560320 CCDC85AQ96PX6 553 aaPredicted RBP12.96□□□□□ -0.33
CRTC3-209ENST00000560320 LRRC4BQ9NT99 713 aa12.96□□□□□ -0.33
CRTC3-209ENST00000560320 SRP68Q9UHB9 627 aaKnown RBP12.96□□□□□ -0.33
CRTC3-209ENST00000560320 FPGT-TNNI3KV9GXZ4 949 aa12.96□□□□□ -0.33
CRTC3-209ENST00000560320 SPEF2Q9C093 1822 aa12.96□□□□□ -0.33
CRTC3-209ENST00000560320 HCLS1P14317 486 aaPredicted RBP12.95□□□□□ -0.34
CRTC3-209ENST00000560320 TBC1D9BQ66K14 1250 aa12.95□□□□□ -0.34
CRTC3-209ENST00000560320 TPTE2Q6XPS3 522 aa12.95□□□□□ -0.34
CRTC3-209ENST00000560320 LDHAL6AQ6ZMR3 332 aa12.95□□□□□ -0.34
CRTC3-209ENST00000560320 NBPF5PQ86XG9 351 aaPredicted RBP12.95□□□□□ -0.34
CRTC3-209ENST00000560320 TNS4Q8IZW8 715 aa12.95□□□□□ -0.34
CRTC3-209ENST00000560320 SYNE4Q8N205 404 aa12.95□□□□□ -0.34
CRTC3-209ENST00000560320 ZNF594Q96JF6 807 aaPredicted RBP12.95□□□□□ -0.34
CRTC3-209ENST00000560320 CCDC8Q9H0W5 538 aaPredicted RBP12.95□□□□□ -0.34
CRTC3-209ENST00000560320 CNNM1Q9NRU3 951 aa12.95□□□□□ -0.34
CRTC3-209ENST00000560320 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.94□□□□□ -0.34
CRTC3-209ENST00000560320 IGHMBP2P38935 993 aaKnown RBP12.94□□□□□ -0.34
CRTC3-209ENST00000560320 TSHZ3Q63HK5 1081 aa12.94□□□□□ -0.34
CRTC3-209ENST00000560320 FLAD1Q8NFF5 587 aa12.94□□□□□ -0.34
CRTC3-209ENST00000560320 EAF2Q96CJ1 260 aaPredicted RBP12.94□□□□□ -0.34
CRTC3-209ENST00000560320 GREM2Q9H772 168 aa12.94□□□□□ -0.34
CRTC3-209ENST00000560320 CARMIL3Q8ND23 1372 aa12.94□□□□□ -0.34
CRTC3-209ENST00000560320 RTL9Q8NET4 1388 aa12.94□□□□□ -0.34
CRTC3-209ENST00000560320 REC8O95072 547 aa12.93□□□□□ -0.34
CRTC3-209ENST00000560320 SEC24BO95487 1268 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms