RNA–Protein interactions for RNA: ENST00000560055.5

RPL28-209, Transcript of ribosomal protein L28, humanhuman

TSL 3 BASIC

Gene RPL28, Length 670 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPL28-209ENST00000560055 SOGA3Q5TF21 947 aa21.3■■□□□ 1
RPL28-209ENST00000560055 IPO8O15397 1037 aaKnown RBP21.29■■□□□ 1
RPL28-209ENST00000560055 GRAPQ13588 217 aa21.29■■□□□ 1
RPL28-209ENST00000560055 CCDC152Q4G0S7 254 aa21.29■■□□□ 1
RPL28-209ENST00000560055 ATF7IPQ6VMQ6 1270 aa21.29■■□□□ 1
RPL28-209ENST00000560055 TTLL11Q8NHH1 800 aa21.29■■□□□ 1
RPL28-209ENST00000560055 GRAPLQ8TC17 118 aaPredicted RBP21.29■■□□□ 1
RPL28-209ENST00000560055 YTHDC1Q96MU7 727 aaKnown RBP21.29■■□□□ 1
RPL28-209ENST00000560055 ZNF219Q9P2Y4 722 aaPredicted RBP21.29■■□□□ 1
RPL28-209ENST00000560055 COL4A1P02462 1669 aa21.28■■□□□ 1
RPL28-209ENST00000560055 RTL9Q8NET4 1388 aa21.28■■□□□ 1
RPL28-209ENST00000560055 NFKBIEO00221 500 aa21.28■■□□□ 1
RPL28-209ENST00000560055 PPEF1O14829 653 aaPredicted RBP21.28■■□□□ 1
RPL28-209ENST00000560055 BBOX1O75936 387 aa21.28■■□□□ 1
RPL28-209ENST00000560055 CCT4P50991 539 aaKnown RBP21.28■■□□□ 1
RPL28-209ENST00000560055 OLFM4Q6UX06 510 aa21.28■■□□□ 1
RPL28-209ENST00000560055 C9orf78Q9NZ63 289 aaPredicted RBP21.28■■□□□ 1
RPL28-209ENST00000560055 FER1L6Q2WGJ9 1857 aa21.27■■□□□ 1
RPL28-209ENST00000560055 CSF1RP07333 972 aa21.27■■□□□ 1
RPL28-209ENST00000560055 NBPF7P0C2Y1 421 aaPredicted RBP21.27■■□□□ 1
RPL28-209ENST00000560055 CCDC93Q567U6 631 aa21.27■■□□□ 1
RPL28-209ENST00000560055 SLC51AQ86UW1 340 aa21.27■■□□□ 1
RPL28-209ENST00000560055 FRAT1Q92837 279 aaPredicted RBP21.27■■□□□ 1
RPL28-209ENST00000560055 CELF1Q92879 486 aaKnown RBP21.27■■□□□ 1
RPL28-209ENST00000560055 GPBP1L1Q9HC44 474 aaPredicted RBP21.27■■□□□ 1
RPL28-209ENST00000560055 MYH3P11055 1940 aa21.27■■□□□ 1
RPL28-209ENST00000560055 LTBP3Q9NS15 1303 aa21.27■□□□□ 0.99
RPL28-209ENST00000560055 FOXO4P98177 505 aa21.26■□□□□ 0.99
RPL28-209ENST00000560055 RASSF7Q02833 373 aa21.26■□□□□ 0.99
RPL28-209ENST00000560055 ZKSCAN2Q63HK3 967 aa21.26■□□□□ 0.99
RPL28-209ENST00000560055 INTS3Q68E01 1043 aaKnown RBP21.26■□□□□ 0.99
RPL28-209ENST00000560055 CC2D2BQ6DHV5 1058 aa21.26■□□□□ 0.99
RPL28-209ENST00000560055 USP44Q9H0E7 712 aa21.26■□□□□ 0.99
RPL28-209ENST00000560055 SEC31BQ9NQW1 1179 aa21.26■□□□□ 0.99
RPL28-209ENST00000560055 TNNQ9UQP3 1299 aa21.26■□□□□ 0.99
RPL28-209ENST00000560055 ATP6V0A2Q9Y487 856 aa21.26■□□□□ 0.99
RPL28-209ENST00000560055 TAF1P21675 1872 aa21.25■□□□□ 0.99
RPL28-209ENST00000560055 PRELPP51888 382 aa21.25■□□□□ 0.99
RPL28-209ENST00000560055 KAZALD1Q96I82 304 aa21.25■□□□□ 0.99
RPL28-209ENST00000560055 GREM2Q9H772 168 aa21.25■□□□□ 0.99
RPL28-209ENST00000560055 EPHA10Q5JZY3 1008 aa21.24■□□□□ 0.99
RPL28-209ENST00000560055 TMC4Q7Z404 712 aa21.24■□□□□ 0.99
RPL28-209ENST00000560055 RTKN2Q8IZC4 609 aa21.24■□□□□ 0.99
RPL28-209ENST00000560055 CCDC85AQ96PX6 553 aaPredicted RBP21.24■□□□□ 0.99
RPL28-209ENST00000560055 RCAN3Q9UKA8 241 aa21.24■□□□□ 0.99
RPL28-209ENST00000560055 RPS8P62241 208 aaKnown RBP21.23■□□□□ 0.99
RPL28-209ENST00000560055 GRIPAP1Q4V328 841 aa21.23■□□□□ 0.99
RPL28-209ENST00000560055 SP8Q8IXZ3 490 aa21.23■□□□□ 0.99
RPL28-209ENST00000560055 TAOK3Q9H2K8 898 aa21.23■□□□□ 0.99
RPL28-209ENST00000560055 SBF1O95248 1867 aa21.22■□□□□ 0.99
RPL28-209ENST00000560055 LRRC37AA6NMS7 1700 aa21.22■□□□□ 0.99
RPL28-209ENST00000560055 FAM161AQ3B820 660 aa21.22■□□□□ 0.99
RPL28-209ENST00000560055 SUCLG2Q96I99 432 aa21.22■□□□□ 0.99
RPL28-209ENST00000560055 FKBP4Q02790 459 aaKnown RBP eCLIP21.21■□□□□ 0.99
RPL28-209ENST00000560055 PSMD1Q99460 953 aa21.21■□□□□ 0.99
RPL28-209ENST00000560055 LMNB1P20700 586 aa21.2■□□□□ 0.98
RPL28-209ENST00000560055 RABL6Q3YEC7 729 aaPredicted RBP21.2■□□□□ 0.98
RPL28-209ENST00000560055 C9orf131Q5VYM1 1079 aa21.2■□□□□ 0.98
RPL28-209ENST00000560055 CLUAP1Q96AJ1 413 aa21.2■□□□□ 0.98
RPL28-209ENST00000560055 CDC5LQ99459 802 aaKnown RBP21.2■□□□□ 0.98
RPL28-209ENST00000560055 ITGA6P23229 1130 aa21.19■□□□□ 0.98
RPL28-209ENST00000560055 LMBR1LQ6UX01 489 aa21.19■□□□□ 0.98
RPL28-209ENST00000560055 BICC1Q9H694 974 aaKnown RBP21.19■□□□□ 0.98
RPL28-209ENST00000560055 RLBP1P12271 317 aa21.18■□□□□ 0.98
RPL28-209ENST00000560055 ANKRD18AQ8IVF6 992 aa21.18■□□□□ 0.98
RPL28-209ENST00000560055 TMEM57Q8N5G2 664 aa21.18■□□□□ 0.98
RPL28-209ENST00000560055 ANKRD44Q8N8A2 993 aa21.18■□□□□ 0.98
RPL28-209ENST00000560055 MEIS3Q99687 375 aa21.18■□□□□ 0.98
RPL28-209ENST00000560055 CEP350Q5VT06 3117 aa21.18■□□□□ 0.98
RPL28-209ENST00000560055 KIF3CO14782 793 aa21.17■□□□□ 0.98
RPL28-209ENST00000560055 DZIP1LQ8IYY4 767 aaKnown RBP21.17■□□□□ 0.98
RPL28-209ENST00000560055 RTFDC1Q9BY42 306 aaPredicted RBP21.17■□□□□ 0.98
RPL28-209ENST00000560055 TMX4Q9H1E5 349 aaPredicted RBP21.17■□□□□ 0.98
RPL28-209ENST00000560055 RNF181Q9P0P0 153 aa21.17■□□□□ 0.98
RPL28-209ENST00000560055 DUOX1Q9NRD9 1551 aa21.16■□□□□ 0.98
RPL28-209ENST00000560055 UBTFL1P0CB47 393 aaPredicted RBP21.16■□□□□ 0.98
RPL28-209ENST00000560055 FTSJ3Q8IY81 847 aaKnown RBP21.16■□□□□ 0.98
RPL28-209ENST00000560055 ZNF277Q9NRM2 450 aaPredicted RBP21.16■□□□□ 0.98
RPL28-209ENST00000560055 BSDC1Q9NW68 430 aaPredicted RBP21.16■□□□□ 0.98
RPL28-209ENST00000560055 LTBP1Q14766 1721 aa21.15■□□□□ 0.98
RPL28-209ENST00000560055 ZC3H4Q9UPT8 1303 aaKnown RBP21.15■□□□□ 0.98
RPL28-209ENST00000560055 ANKRD18BA2A2Z9 1011 aa21.15■□□□□ 0.98
RPL28-209ENST00000560055 IFIT5Q13325 482 aaKnown RBP21.15■□□□□ 0.98
RPL28-209ENST00000560055 MPNDQ8N594 471 aa21.15■□□□□ 0.98
RPL28-209ENST00000560055 DPP8Q6V1X1 898 aaPredicted RBP21.14■□□□□ 0.97
RPL28-209ENST00000560055 PODXL2Q9NZ53 605 aa21.14■□□□□ 0.97
RPL28-209ENST00000560055 CHMP3Q9Y3E7 222 aa21.14■□□□□ 0.97
RPL28-209ENST00000560055 CCDC88AQ3V6T2 1871 aa21.13■□□□□ 0.97
RPL28-209ENST00000560055 IGHMBP2P38935 993 aaKnown RBP21.13■□□□□ 0.97
RPL28-209ENST00000560055 IARSP41252 1262 aaKnown RBP21.13■□□□□ 0.97
RPL28-209ENST00000560055 GPSM2P81274 684 aa21.13■□□□□ 0.97
RPL28-209ENST00000560055 CCDC57Q2TAC2 916 aa21.13■□□□□ 0.97
RPL28-209ENST00000560055 NMRK2Q9NPI5 230 aa21.13■□□□□ 0.97
RPL28-209ENST00000560055 MINPP1Q9UNW1 487 aa21.13■□□□□ 0.97
RPL28-209ENST00000560055 DICER1Q9UPY3 1922 aaKnown RBP21.13■□□□□ 0.97
RPL28-209ENST00000560055 GNAI3P08754 354 aa21.12■□□□□ 0.97
RPL28-209ENST00000560055 VPS33BQ9H267 617 aa21.12■□□□□ 0.97
RPL28-209ENST00000560055 NSFL1CQ9UNZ2 370 aaKnown RBP21.12■□□□□ 0.97
RPL28-209ENST00000560055 LRRFIP2Q9Y608 721 aaKnown RBP21.12■□□□□ 0.97
RPL28-209ENST00000560055 PLIN1O60240 522 aa21.11■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms