RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 BBOX1O75936 387 aa22.9■■□□□ 1.26
HDDC3-205ENST00000559898 SF3B3Q15393 1217 aaKnown RBP22.9■■□□□ 1.26
HDDC3-205ENST00000559898 CCDC30Q5VVM6 783 aa22.9■■□□□ 1.26
HDDC3-205ENST00000559898 RTFDC1Q9BY42 306 aaPredicted RBP22.9■■□□□ 1.26
HDDC3-205ENST00000559898 MAP3K2Q9Y2U5 619 aa22.9■■□□□ 1.26
HDDC3-205ENST00000559898 FANCIQ9NVI1 1328 aa22.89■■□□□ 1.26
HDDC3-205ENST00000559898 EPHX2P34913 555 aa22.89■■□□□ 1.25
HDDC3-205ENST00000559898 TWISTNBQ3B726 338 aaPredicted RBP22.89■■□□□ 1.25
HDDC3-205ENST00000559898 FAM9BQ8IZU0 186 aa22.89■■□□□ 1.25
HDDC3-205ENST00000559898 GPC2Q8N158 579 aa22.89■■□□□ 1.25
HDDC3-205ENST00000559898 SEC31BQ9NQW1 1179 aa22.89■■□□□ 1.25
HDDC3-205ENST00000559898 HACL1Q9UJ83 578 aa22.89■■□□□ 1.25
HDDC3-205ENST00000559898 IQCA1LA6NCM1 817 aa22.88■■□□□ 1.25
HDDC3-205ENST00000559898 IGKV5-2P06315 115 aa22.88■■□□□ 1.25
HDDC3-205ENST00000559898 EPS15P42566 896 aa22.88■■□□□ 1.25
HDDC3-205ENST00000559898 SCNN1DP51172 638 aa22.88■■□□□ 1.25
HDDC3-205ENST00000559898 DPP8Q6V1X1 898 aaPredicted RBP22.88■■□□□ 1.25
HDDC3-205ENST00000559898 MPNDQ8N594 471 aa22.88■■□□□ 1.25
HDDC3-205ENST00000559898 GPR101Q96P66 508 aaPredicted RBP22.88■■□□□ 1.25
HDDC3-205ENST00000559898 CCDC85AQ96PX6 553 aaPredicted RBP22.88■■□□□ 1.25
HDDC3-205ENST00000559898 METTL22Q9BUU2 404 aaPredicted RBP22.88■■□□□ 1.25
HDDC3-205ENST00000559898 PI4KAP2A4QPH2 592 aa22.87■■□□□ 1.25
HDDC3-205ENST00000559898 EIF6P56537 245 aaKnown RBP22.87■■□□□ 1.25
HDDC3-205ENST00000559898 NIM1KQ8IY84 436 aa22.87■■□□□ 1.25
HDDC3-205ENST00000559898 PI4KAP1Q8N8J0 262 aa22.87■■□□□ 1.25
HDDC3-205ENST00000559898 ZBTB38Q8NAP3 1195 aaPredicted RBP22.87■■□□□ 1.25
HDDC3-205ENST00000559898 LDHDQ86WU2 507 aa22.86■■□□□ 1.25
HDDC3-205ENST00000559898 IL16Q14005 1332 aa22.85■■□□□ 1.25
HDDC3-205ENST00000559898 YDJCA8MPS7 323 aa22.85■■□□□ 1.25
HDDC3-205ENST00000559898 ITGBL1O95965 494 aaPredicted RBP22.85■■□□□ 1.25
HDDC3-205ENST00000559898 GPSM2P81274 684 aa22.85■■□□□ 1.25
HDDC3-205ENST00000559898 FMR1Q06787 632 aaKnown RBP eCLIP22.85■■□□□ 1.25
HDDC3-205ENST00000559898 CXCL9Q07325 125 aa22.85■■□□□ 1.25
HDDC3-205ENST00000559898 CWF19L2Q2TBE0 894 aaKnown RBP22.85■■□□□ 1.25
HDDC3-205ENST00000559898 GRIPAP1Q4V328 841 aa22.85■■□□□ 1.25
HDDC3-205ENST00000559898 MAP1SQ66K74 1059 aaPredicted RBP22.85■■□□□ 1.25
HDDC3-205ENST00000559898 CLEC11AQ9Y240 323 aa22.85■■□□□ 1.25
HDDC3-205ENST00000559898 PASKQ96RG2 1323 aa22.84■■□□□ 1.25
HDDC3-205ENST00000559898 PCCAP05165 728 aaPredicted RBP22.84■■□□□ 1.25
HDDC3-205ENST00000559898 EXOSC9Q06265 439 aaKnown RBP22.84■■□□□ 1.25
HDDC3-205ENST00000559898 KSR2Q6VAB6 950 aa22.84■■□□□ 1.25
HDDC3-205ENST00000559898 CCDC191Q8NCU4 936 aa22.84■■□□□ 1.25
HDDC3-205ENST00000559898 CWC25Q9NXE8 425 aaPredicted RBP22.84■■□□□ 1.25
HDDC3-205ENST00000559898 POLLQ9UGP5 575 aa22.84■■□□□ 1.25
HDDC3-205ENST00000559898 SPEF2Q9C093 1822 aa22.84■■□□□ 1.25
HDDC3-205ENST00000559898 SHTN1A0MZ66 631 aa22.83■■□□□ 1.25
HDDC3-205ENST00000559898 SLC4A2P04920 1241 aa22.83■■□□□ 1.25
HDDC3-205ENST00000559898 KIAA2012Q0VF49 1180 aa22.83■■□□□ 1.25
HDDC3-205ENST00000559898 JMYQ8N9B5 988 aa22.83■■□□□ 1.25
HDDC3-205ENST00000559898 VAMP4O75379 141 aa22.82■■□□□ 1.24
HDDC3-205ENST00000559898 RAD17O75943 681 aa22.82■■□□□ 1.24
HDDC3-205ENST00000559898 ZNRF3Q9ULT6 936 aa22.82■■□□□ 1.24
HDDC3-205ENST00000559898 PCNTO95613 3336 aa22.82■■□□□ 1.24
HDDC3-205ENST00000559898 RIMBP2O15034 1052 aa22.81■■□□□ 1.24
HDDC3-205ENST00000559898 DDX58O95786 925 aaKnown RBP22.81■■□□□ 1.24
HDDC3-205ENST00000559898 NCBP3Q53F19 620 aaKnown RBP22.81■■□□□ 1.24
HDDC3-205ENST00000559898 STK31Q9BXU1 1019 aa22.81■■□□□ 1.24
HDDC3-205ENST00000559898 TMX4Q9H1E5 349 aaPredicted RBP22.81■■□□□ 1.24
HDDC3-205ENST00000559898 NSFL1CQ9UNZ2 370 aaKnown RBP22.81■■□□□ 1.24
HDDC3-205ENST00000559898 WTIPA6NIX2 430 aaPredicted RBP22.8■■□□□ 1.24
HDDC3-205ENST00000559898 RPS8P62241 208 aaKnown RBP22.8■■□□□ 1.24
HDDC3-205ENST00000559898 WDR63Q8IWG1 891 aa22.8■■□□□ 1.24
HDDC3-205ENST00000559898 SUPT20HQ8NEM7 779 aa22.8■■□□□ 1.24
HDDC3-205ENST00000559898 KCNQ5Q9NR82 932 aa22.8■■□□□ 1.24
HDDC3-205ENST00000559898 MYH3P11055 1940 aa22.8■■□□□ 1.24
HDDC3-205ENST00000559898 SCN9AQ15858 1988 aa22.8■■□□□ 1.24
HDDC3-205ENST00000559898 PDE8AO60658 829 aa22.79■■□□□ 1.24
HDDC3-205ENST00000559898 GMPSP49915 693 aaPredicted RBP22.79■■□□□ 1.24
HDDC3-205ENST00000559898 DBNDD1Q9H9R9 158 aa22.79■■□□□ 1.24
HDDC3-205ENST00000559898 MKRN1Q9UHC7 482 aaKnown RBP22.79■■□□□ 1.24
HDDC3-205ENST00000559898 NEURL1BA8MQ27 555 aa22.78■■□□□ 1.24
HDDC3-205ENST00000559898 FLIIQ13045 1269 aa22.78■■□□□ 1.24
HDDC3-205ENST00000559898 CNTROBQ8N137 903 aa22.78■■□□□ 1.24
HDDC3-205ENST00000559898 VPS33BQ9H267 617 aa22.78■■□□□ 1.24
HDDC3-205ENST00000559898 C6orf229H3BNL8 230 aa22.77■■□□□ 1.24
HDDC3-205ENST00000559898 DOK7Q18PE1 504 aa22.77■■□□□ 1.24
HDDC3-205ENST00000559898 TMC4Q7Z404 712 aa22.77■■□□□ 1.24
HDDC3-205ENST00000559898 TBC1D16Q8TBP0 767 aa22.77■■□□□ 1.24
HDDC3-205ENST00000559898 CREBZFQ9NS37 354 aa22.77■■□□□ 1.24
HDDC3-205ENST00000559898 GPRC5DQ9NZD1 345 aa22.77■■□□□ 1.24
HDDC3-205ENST00000559898 LMOD1P29536 600 aaPredicted RBP22.76■■□□□ 1.23
HDDC3-205ENST00000559898 CIAPIN1Q6FI81 312 aa22.76■■□□□ 1.23
HDDC3-205ENST00000559898 PNMA8AQ86V59 439 aaPredicted RBP22.76■■□□□ 1.23
HDDC3-205ENST00000559898 ZBTB12Q9Y330 459 aaPredicted RBP22.76■■□□□ 1.23
HDDC3-205ENST00000559898 CDHR2Q9BYE9 1310 aa22.76■■□□□ 1.23
HDDC3-205ENST00000559898 CACNA1FO60840 1977 aa22.76■■□□□ 1.23
HDDC3-205ENST00000559898 WASHC4Q2M389 1173 aa22.75■■□□□ 1.23
HDDC3-205ENST00000559898 TTLL11Q8NHH1 800 aa22.75■■□□□ 1.23
HDDC3-205ENST00000559898 RTL9Q8NET4 1388 aa22.75■■□□□ 1.23
HDDC3-205ENST00000559898 F6X3S4 739 aa22.74■■□□□ 1.23
HDDC3-205ENST00000559898 H7C1W4 665 aa22.74■■□□□ 1.23
HDDC3-205ENST00000559898 TRAF5O00463 557 aa22.74■■□□□ 1.23
HDDC3-205ENST00000559898 HIRAP54198 1017 aaPredicted RBP22.74■■□□□ 1.23
HDDC3-205ENST00000559898 CASP7P55210 303 aa22.74■■□□□ 1.23
HDDC3-205ENST00000559898 CTSWP56202 376 aa22.74■■□□□ 1.23
HDDC3-205ENST00000559898 CCDC152Q4G0S7 254 aa22.74■■□□□ 1.23
HDDC3-205ENST00000559898 UBE3BQ7Z3V4 1068 aa22.74■■□□□ 1.23
HDDC3-205ENST00000559898 GREM2Q9H772 168 aa22.74■■□□□ 1.23
HDDC3-205ENST00000559898 PSMD14O00487 310 aa22.73■■□□□ 1.23
HDDC3-205ENST00000559898 FKBP5Q13451 457 aaPredicted RBP22.73■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 114.9 ms