RNA–Protein interactions for RNA: ENST00000559774.6

LRRC28-215, Transcript of leucine rich repeat containing 28, human

TSL 2

Gene LRRC28, Length 624 nt, Biotype processed transcript, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LRRC28-215	ENST00000559774	BBOX1	O75936	387 aa		10.86	□□□□□ -0.67
LRRC28-215	ENST00000559774	ERICH6B	Q5W0A0	696 aa		10.86	□□□□□ -0.67
LRRC28-215	ENST00000559774	LMBR1L	Q6UX01	489 aa		10.86	□□□□□ -0.67
LRRC28-215	ENST00000559774	DDX46	Q7L014	1031 aa	Known RBP	10.86	□□□□□ -0.67
LRRC28-215	ENST00000559774	RPGR	Q92834	1020 aa	Known RBP	10.86	□□□□□ -0.67
LRRC28-215	ENST00000559774	CNKSR1	Q969H4	720 aa		10.86	□□□□□ -0.67
LRRC28-215	ENST00000559774	CDC5L	Q99459	802 aa	Known RBP	10.86	□□□□□ -0.67
LRRC28-215	ENST00000559774	BICC1	Q9H694	974 aa	Known RBP	10.86	□□□□□ -0.67
LRRC28-215	ENST00000559774	FBXO3	Q9UK99	471 aa		10.86	□□□□□ -0.67
LRRC28-215	ENST00000559774	LRRFIP2	Q9Y608	721 aa	Known RBP	10.86	□□□□□ -0.67
LRRC28-215	ENST00000559774	KCNA3	P22001	575 aa		10.85	□□□□□ -0.67
LRRC28-215	ENST00000559774	IFIT5	Q13325	482 aa	Known RBP	10.85	□□□□□ -0.67
LRRC28-215	ENST00000559774	CCDC57	Q2TAC2	916 aa		10.85	□□□□□ -0.67
LRRC28-215	ENST00000559774	GRIPAP1	Q4V328	841 aa		10.85	□□□□□ -0.67
LRRC28-215	ENST00000559774	C2CD5	Q86YS7	1000 aa		10.85	□□□□□ -0.67
LRRC28-215	ENST00000559774	ANKRD44	Q8N8A2	993 aa		10.85	□□□□□ -0.67
LRRC28-215	ENST00000559774	JARID2	Q92833	1246 aa	Predicted RBP	10.85	□□□□□ -0.67
LRRC28-215	ENST00000559774	SYT17	Q9BSW7	474 aa		10.85	□□□□□ -0.67
LRRC28-215	ENST00000559774	FHDC1	Q9C0D6	1143 aa	Predicted RBP	10.85	□□□□□ -0.67
LRRC28-215	ENST00000559774	AFDN	P55196	1824 aa	Known RBP	10.84	□□□□□ -0.67
LRRC28-215	ENST00000559774	KIF13B	Q9NQT8	1826 aa		10.84	□□□□□ -0.67
LRRC28-215	ENST00000559774	ANKRD18B	A2A2Z9	1011 aa		10.84	□□□□□ -0.67
LRRC28-215	ENST00000559774	HMMR	O75330	724 aa		10.84	□□□□□ -0.67
LRRC28-215	ENST00000559774	NEFL	P07196	543 aa		10.84	□□□□□ -0.67
LRRC28-215	ENST00000559774	ATP8B2	P98198	1209 aa		10.84	□□□□□ -0.67
LRRC28-215	ENST00000559774	GRAP	Q13588	217 aa		10.84	□□□□□ -0.67
LRRC28-215	ENST00000559774	EPHA10	Q5JZY3	1008 aa		10.84	□□□□□ -0.67
LRRC28-215	ENST00000559774	CC2D2B	Q6DHV5	1058 aa		10.84	□□□□□ -0.67
LRRC28-215	ENST00000559774	CCDC24	Q8N4L8	307 aa		10.84	□□□□□ -0.67
LRRC28-215	ENST00000559774	GRAPL	Q8TC17	118 aa	Predicted RBP	10.84	□□□□□ -0.67
LRRC28-215	ENST00000559774	CRBN	Q96SW2	442 aa		10.84	□□□□□ -0.67
LRRC28-215	ENST00000559774	PIM2	Q9P1W9	311 aa		10.84	□□□□□ -0.67
LRRC28-215	ENST00000559774	DPEP1	P16444	411 aa		10.83	□□□□□ -0.68
LRRC28-215	ENST00000559774	ITGA6	P23229	1130 aa		10.83	□□□□□ -0.68
LRRC28-215	ENST00000559774	RPS8	P62241	208 aa	Known RBP	10.83	□□□□□ -0.68
LRRC28-215	ENST00000559774	SOGA3	Q5TF21	947 aa		10.83	□□□□□ -0.68
LRRC28-215	ENST00000559774	CEP85	Q6P2H3	762 aa		10.83	□□□□□ -0.68
LRRC28-215	ENST00000559774	C3orf67	Q6ZVT6	689 aa		10.83	□□□□□ -0.68
LRRC28-215	ENST00000559774	TTLL6	Q8N841	843 aa		10.83	□□□□□ -0.68
LRRC28-215	ENST00000559774	SSH3	Q8TE77	659 aa		10.83	□□□□□ -0.68
LRRC28-215	ENST00000559774	GREM2	Q9H772	168 aa		10.83	□□□□□ -0.68
LRRC28-215	ENST00000559774	LAMB2	P55268	1798 aa		10.82	□□□□□ -0.68
LRRC28-215	ENST00000559774		A0A0G2JLW4	131 aa		10.82	□□□□□ -0.68
LRRC28-215	ENST00000559774	SRGAP3	O43295	1099 aa		10.82	□□□□□ -0.68
LRRC28-215	ENST00000559774	CHRNA5	P30532	468 aa		10.82	□□□□□ -0.68
LRRC28-215	ENST00000559774	IGHMBP2	P38935	993 aa	Known RBP	10.82	□□□□□ -0.68
LRRC28-215	ENST00000559774	POLA2	Q14181	598 aa		10.82	□□□□□ -0.68
LRRC28-215	ENST00000559774	FAM161A	Q3B820	660 aa		10.82	□□□□□ -0.68
LRRC28-215	ENST00000559774	ANKRD18A	Q8IVF6	992 aa		10.82	□□□□□ -0.68
LRRC28-215	ENST00000559774	ZNF622	Q969S3	477 aa	Known RBP eCLIP	10.82	□□□□□ -0.68
LRRC28-215	ENST00000559774	COPRS	Q9NQ92	184 aa		10.82	□□□□□ -0.68
LRRC28-215	ENST00000559774	BSDC1	Q9NW68	430 aa	Predicted RBP	10.82	□□□□□ -0.68
LRRC28-215	ENST00000559774	DDX60	Q8IY21	1712 aa	Known RBP	10.81	□□□□□ -0.68
LRRC28-215	ENST00000559774	SRCAP	Q6ZRS2	3230 aa		10.81	□□□□□ -0.68
LRRC28-215	ENST00000559774	CIAO1	O76071	339 aa		10.81	□□□□□ -0.68
LRRC28-215	ENST00000559774	RFX5	P48382	616 aa	Predicted RBP	10.81	□□□□□ -0.68
LRRC28-215	ENST00000559774	HSP90AB4P	Q58FF6	505 aa		10.81	□□□□□ -0.68
LRRC28-215	ENST00000559774	DALRD3	Q5D0E6	543 aa	Known RBP	10.81	□□□□□ -0.68
LRRC28-215	ENST00000559774	SP8	Q8IXZ3	490 aa		10.81	□□□□□ -0.68
LRRC28-215	ENST00000559774	EXOC6	Q8TAG9	804 aa		10.81	□□□□□ -0.68
LRRC28-215	ENST00000559774	TMX4	Q9H1E5	349 aa	Predicted RBP	10.81	□□□□□ -0.68
LRRC28-215	ENST00000559774	CHMP3	Q9Y3E7	222 aa		10.81	□□□□□ -0.68
LRRC28-215	ENST00000559774	PTPN12	Q05209	780 aa	Known RBP	10.8	□□□□□ -0.68
LRRC28-215	ENST00000559774	TAF7L	Q5H9L4	462 aa		10.8	□□□□□ -0.68
LRRC28-215	ENST00000559774	PRPF40B	Q6NWY9	871 aa	Known RBP	10.8	□□□□□ -0.68
LRRC28-215	ENST00000559774	LDHAL6A	Q6ZMR3	332 aa		10.8	□□□□□ -0.68
LRRC28-215	ENST00000559774	KLHL34	Q8N239	644 aa		10.8	□□□□□ -0.68
LRRC28-215	ENST00000559774	C7orf43	Q8WVR3	580 aa		10.8	□□□□□ -0.68
LRRC28-215	ENST00000559774	MPHOSPH8	Q99549	860 aa		10.8	□□□□□ -0.68
LRRC28-215	ENST00000559774	SEC31B	Q9NQW1	1179 aa		10.8	□□□□□ -0.68
LRRC28-215	ENST00000559774	NOP58	Q9Y2X3	529 aa	Known RBP	10.8	□□□□□ -0.68
LRRC28-215	ENST00000559774	ATP6V0A2	Q9Y487	856 aa		10.8	□□□□□ -0.68
LRRC28-215	ENST00000559774	ANKRD31	Q8N7Z5	1873 aa		10.8	□□□□□ -0.68
LRRC28-215	ENST00000559774	TNRC6C	Q9HCJ0	1690 aa	Known RBP	10.79	□□□□□ -0.68
LRRC28-215	ENST00000559774	PNMA6E	A0A0J9YXQ4	647 aa		10.79	□□□□□ -0.68
LRRC28-215	ENST00000559774	MAPK8IP2	Q13387	824 aa	Predicted RBP	10.79	□□□□□ -0.68
LRRC28-215	ENST00000559774	HDAC1	Q13547	482 aa	Predicted RBP	10.79	□□□□□ -0.68
LRRC28-215	ENST00000559774	RTKN2	Q8IZC4	609 aa		10.79	□□□□□ -0.68
LRRC28-215	ENST00000559774	NLGN2	Q8NFZ4	835 aa		10.79	□□□□□ -0.68
LRRC28-215	ENST00000559774	CELF1	Q92879	486 aa	Known RBP	10.79	□□□□□ -0.68
LRRC28-215	ENST00000559774	ANKRD2	Q9GZV1	360 aa		10.79	□□□□□ -0.68
LRRC28-215	ENST00000559774	RWDD1	Q9H446	243 aa	Predicted RBP	10.79	□□□□□ -0.68
LRRC28-215	ENST00000559774	C1orf115	Q9H7X2	142 aa		10.79	□□□□□ -0.68
LRRC28-215	ENST00000559774	PODXL2	Q9NZ53	605 aa		10.79	□□□□□ -0.68
LRRC28-215	ENST00000559774	MROH5	Q6ZUA9	1318 aa		10.79	□□□□□ -0.68
LRRC28-215	ENST00000559774	EYA2	O00167	538 aa		10.78	□□□□□ -0.68
LRRC28-215	ENST00000559774	PPEF1	O14829	653 aa	Predicted RBP	10.78	□□□□□ -0.68
LRRC28-215	ENST00000559774	IL15	P40933	162 aa	Predicted RBP	10.78	□□□□□ -0.68
LRRC28-215	ENST00000559774	SIRT2	Q8IXJ6	389 aa		10.78	□□□□□ -0.68
LRRC28-215	ENST00000559774	CCDC85A	Q96PX6	553 aa	Predicted RBP	10.78	□□□□□ -0.68
LRRC28-215	ENST00000559774	VPS33B	Q9H267	617 aa		10.78	□□□□□ -0.68
LRRC28-215	ENST00000559774	MINPP1	Q9UNW1	487 aa		10.78	□□□□□ -0.68
LRRC28-215	ENST00000559774	RIPOR2	Q9Y4F9	1068 aa		10.78	□□□□□ -0.68
LRRC28-215	ENST00000559774	PCDHB15	Q9Y5E8	787 aa		10.78	□□□□□ -0.68
LRRC28-215	ENST00000559774	RAB11FIP3	O75154	756 aa		10.77	□□□□□ -0.69
LRRC28-215	ENST00000559774	G3BP1	Q13283	466 aa	Known RBP eCLIP	10.77	□□□□□ -0.69
LRRC28-215	ENST00000559774	CCDC93	Q567U6	631 aa		10.77	□□□□□ -0.69
LRRC28-215	ENST00000559774	ERC1	Q8IUD2	1116 aa		10.77	□□□□□ -0.69
LRRC28-215	ENST00000559774	RTFDC1	Q9BY42	306 aa	Predicted RBP	10.77	□□□□□ -0.69
LRRC28-215	ENST00000559774	DCTPP1	Q9H773	170 aa		10.77	□□□□□ -0.69

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