RNA–Protein interactions for RNA: ENST00000559108.1

TPM1-217, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 437 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-217ENST00000559108 SEC31BQ9NQW1 1179 aa13.79□□□□□ -0.2
TPM1-217ENST00000559108 DUOX1Q9NRD9 1551 aa13.79□□□□□ -0.2
TPM1-217ENST00000559108 CCDC88AQ3V6T2 1871 aa13.78□□□□□ -0.2
TPM1-217ENST00000559108 H0YIN7 160 aa13.78□□□□□ -0.2
TPM1-217ENST00000559108 HOXA10P31260 410 aaPredicted RBP13.78□□□□□ -0.2
TPM1-217ENST00000559108 CTSWP56202 376 aa13.78□□□□□ -0.2
TPM1-217ENST00000559108 SF3B3Q15393 1217 aaKnown RBP13.78□□□□□ -0.2
TPM1-217ENST00000559108 TTLL11Q8NHH1 800 aa13.78□□□□□ -0.2
TPM1-217ENST00000559108 CELF1Q92879 486 aaKnown RBP13.78□□□□□ -0.2
TPM1-217ENST00000559108 SBF1O95248 1867 aa13.78□□□□□ -0.2
TPM1-217ENST00000559108 PDE8AO60658 829 aa13.77□□□□□ -0.21
TPM1-217ENST00000559108 NPR1P16066 1061 aa13.77□□□□□ -0.21
TPM1-217ENST00000559108 FAM161AQ3B820 660 aa13.77□□□□□ -0.21
TPM1-217ENST00000559108 STYK1Q6J9G0 422 aa13.77□□□□□ -0.21
TPM1-217ENST00000559108 PRPF40BQ6NWY9 871 aaKnown RBP13.77□□□□□ -0.21
TPM1-217ENST00000559108 C7orf43Q8WVR3 580 aa13.77□□□□□ -0.21
TPM1-217ENST00000559108 NLRP3Q96P20 1036 aa13.77□□□□□ -0.21
TPM1-217ENST00000559108 BICC1Q9H694 974 aaKnown RBP13.77□□□□□ -0.21
TPM1-217ENST00000559108 GREM2Q9H772 168 aa13.77□□□□□ -0.21
TPM1-217ENST00000559108 C9orf78Q9NZ63 289 aaPredicted RBP13.77□□□□□ -0.21
TPM1-217ENST00000559108 CSF1RP07333 972 aa13.76□□□□□ -0.21
TPM1-217ENST00000559108 ZNF622Q969S3 477 aaKnown RBP eCLIP13.76□□□□□ -0.21
TPM1-217ENST00000559108 MASTLQ96GX5 879 aa13.76□□□□□ -0.21
TPM1-217ENST00000559108 COG6Q9Y2V7 657 aa13.76□□□□□ -0.21
TPM1-217ENST00000559108 RTL9Q8NET4 1388 aa13.75□□□□□ -0.21
TPM1-217ENST00000559108 ZBTB7BO15156 539 aaPredicted RBP13.75□□□□□ -0.21
TPM1-217ENST00000559108 PRELPP51888 382 aa13.75□□□□□ -0.21
TPM1-217ENST00000559108 RABL6Q3YEC7 729 aaPredicted RBP13.75□□□□□ -0.21
TPM1-217ENST00000559108 ITPRIPQ8IWB1 547 aa13.75□□□□□ -0.21
TPM1-217ENST00000559108 C1orf115Q9H7X2 142 aa13.75□□□□□ -0.21
TPM1-217ENST00000559108 PIM2Q9P1W9 311 aa13.75□□□□□ -0.21
TPM1-217ENST00000559108 ZNF219Q9P2Y4 722 aaPredicted RBP13.75□□□□□ -0.21
TPM1-217ENST00000559108 BCS1LQ9Y276 419 aa13.75□□□□□ -0.21
TPM1-217ENST00000559108 LRRFIP2Q9Y608 721 aaKnown RBP13.75□□□□□ -0.21
TPM1-217ENST00000559108 COL4A5P29400 1685 aa13.75□□□□□ -0.21
TPM1-217ENST00000559108 MVPQ14764 893 aaKnown RBP13.74□□□□□ -0.21
TPM1-217ENST00000559108 LMBR1LQ6UX01 489 aa13.74□□□□□ -0.21
TPM1-217ENST00000559108 FTSJ3Q8IY81 847 aaKnown RBP13.74□□□□□ -0.21
TPM1-217ENST00000559108 PELP1Q8IZL8 1130 aaKnown RBP13.74□□□□□ -0.21
TPM1-217ENST00000559108 TTLL6Q8N841 843 aa13.74□□□□□ -0.21
TPM1-217ENST00000559108 RPGRQ92834 1020 aaKnown RBP13.74□□□□□ -0.21
TPM1-217ENST00000559108 CRAMP1Q96RY5 1269 aa13.74□□□□□ -0.21
TPM1-217ENST00000559108 UTRNP46939 3433 aa13.74□□□□□ -0.21
TPM1-217ENST00000559108 WTIPA6NIX2 430 aaPredicted RBP13.73□□□□□ -0.21
TPM1-217ENST00000559108 DALRD3Q5D0E6 543 aaKnown RBP13.73□□□□□ -0.21
TPM1-217ENST00000559108 ZNF594Q96JF6 807 aaPredicted RBP13.73□□□□□ -0.21
TPM1-217ENST00000559108 SUPT16HQ9Y5B9 1047 aaKnown RBP13.73□□□□□ -0.21
TPM1-217ENST00000559108 C21orf2O43822 256 aa13.72□□□□□ -0.21
TPM1-217ENST00000559108 UBTFL1P0CB47 393 aaPredicted RBP13.72□□□□□ -0.21
TPM1-217ENST00000559108 RFX5P48382 616 aaPredicted RBP13.72□□□□□ -0.21
TPM1-217ENST00000559108 GRAPQ13588 217 aa13.72□□□□□ -0.21
TPM1-217ENST00000559108 PDE3AQ14432 1141 aa13.72□□□□□ -0.21
TPM1-217ENST00000559108 KLHDC4Q8TBB5 520 aa13.72□□□□□ -0.21
TPM1-217ENST00000559108 GRAPLQ8TC17 118 aaPredicted RBP13.72□□□□□ -0.21
TPM1-217ENST00000559108 CNKSR1Q969H4 720 aa13.72□□□□□ -0.21
TPM1-217ENST00000559108 RBM17Q96I25 401 aaKnown RBP13.72□□□□□ -0.21
TPM1-217ENST00000559108 PDZRN3Q9UPQ7 1066 aa13.72□□□□□ -0.21
TPM1-217ENST00000559108 TIAM2Q8IVF5 1701 aa13.72□□□□□ -0.21
TPM1-217ENST00000559108 DICER1Q9UPY3 1922 aaKnown RBP13.71□□□□□ -0.21
TPM1-217ENST00000559108 NFKBIEO00221 500 aa13.71□□□□□ -0.21
TPM1-217ENST00000559108 PPEF1O14829 653 aaPredicted RBP13.71□□□□□ -0.21
TPM1-217ENST00000559108 ITGA6P23229 1130 aa13.71□□□□□ -0.21
TPM1-217ENST00000559108 RASSF7Q02833 373 aa13.71□□□□□ -0.21
TPM1-217ENST00000559108 CCDC152Q4G0S7 254 aa13.71□□□□□ -0.21
TPM1-217ENST00000559108 CRBNQ96SW2 442 aa13.71□□□□□ -0.21
TPM1-217ENST00000559108 ZNF646O15015 1829 aaPredicted RBP13.71□□□□□ -0.22
TPM1-217ENST00000559108 CHD4Q14839 1912 aa13.7□□□□□ -0.22
TPM1-217ENST00000559108 DDX46Q7L014 1031 aaKnown RBP13.7□□□□□ -0.22
TPM1-217ENST00000559108 PUS3Q9BZE2 481 aaKnown RBP13.7□□□□□ -0.22
TPM1-217ENST00000559108 PNMA6EA0A0J9YXQ4 647 aa13.69□□□□□ -0.22
TPM1-217ENST00000559108 ALDH1B1P30837 517 aa13.69□□□□□ -0.22
TPM1-217ENST00000559108 RPS8P62241 208 aaKnown RBP13.69□□□□□ -0.22
TPM1-217ENST00000559108 IRX6P78412 446 aaPredicted RBP13.69□□□□□ -0.22
TPM1-217ENST00000559108 GPR162Q16538 588 aa13.69□□□□□ -0.22
TPM1-217ENST00000559108 ZBTB40Q9NUA8 1239 aa13.69□□□□□ -0.22
TPM1-217ENST00000559108 CHMP3Q9Y3E7 222 aa13.69□□□□□ -0.22
TPM1-217ENST00000559108 ATP6V0A2Q9Y487 856 aa13.69□□□□□ -0.22
TPM1-217ENST00000559108 GNAI3P08754 354 aa13.68□□□□□ -0.22
TPM1-217ENST00000559108 MTX1Q13505 466 aa13.68□□□□□ -0.22
TPM1-217ENST00000559108 SIRT2Q8IXJ6 389 aa13.68□□□□□ -0.22
TPM1-217ENST00000559108 SNAP23O00161 211 aa13.67□□□□□ -0.22
TPM1-217ENST00000559108 GNAI2P04899 355 aa13.67□□□□□ -0.22
TPM1-217ENST00000559108 GPSM2P81274 684 aa13.67□□□□□ -0.22
TPM1-217ENST00000559108 GPR101Q96P66 508 aaPredicted RBP13.67□□□□□ -0.22
TPM1-217ENST00000559108 DDX19BQ9UMR2 479 aa13.67□□□□□ -0.22
TPM1-217ENST00000559108 PA2G4Q9UQ80 394 aaKnown RBP13.67□□□□□ -0.22
TPM1-217ENST00000559108 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.67□□□□□ -0.22
TPM1-217ENST00000559108 SCN9AQ15858 1988 aa13.67□□□□□ -0.22
TPM1-217ENST00000559108 ANKRD18BA2A2Z9 1011 aa13.66□□□□□ -0.22
TPM1-217ENST00000559108 BBOX1O75936 387 aa13.66□□□□□ -0.22
TPM1-217ENST00000559108 HSP90B1P14625 803 aaKnown RBP13.66□□□□□ -0.22
TPM1-217ENST00000559108 PTPN12Q05209 780 aaKnown RBP13.66□□□□□ -0.22
TPM1-217ENST00000559108 IFIT5Q13325 482 aaKnown RBP13.66□□□□□ -0.22
TPM1-217ENST00000559108 LRRC24Q50LG9 513 aa13.66□□□□□ -0.22
TPM1-217ENST00000559108 CEP85Q6P2H3 762 aa13.66□□□□□ -0.22
TPM1-217ENST00000559108 SP8Q8IXZ3 490 aa13.66□□□□□ -0.22
TPM1-217ENST00000559108 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.66□□□□□ -0.22
TPM1-217ENST00000559108 MINPP1Q9UNW1 487 aa13.66□□□□□ -0.22
TPM1-217ENST00000559108 ARAP2Q8WZ64 1704 aa13.66□□□□□ -0.22
TPM1-217ENST00000559108 MS4A1P11836 297 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms