RNA–Protein interactions for RNA: ENST00000557703.5

SHMT2-234, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 542 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-234ENST00000557703 CHMP4BQ9H444 224 aaKnown RBP17.24■□□□□ 0.35
SHMT2-234ENST00000557703 LAMB2P55268 1798 aa17.24■□□□□ 0.35
SHMT2-234ENST00000557703 GNAI3P08754 354 aa17.23■□□□□ 0.35
SHMT2-234ENST00000557703 YBX3P16989 372 aaKnown RBP eCLIP17.23■□□□□ 0.359e-9■□□□□ 9.1
SHMT2-234ENST00000557703 GRAPQ13588 217 aa17.23■□□□□ 0.35
SHMT2-234ENST00000557703 RTKN2Q8IZC4 609 aa17.23■□□□□ 0.35
SHMT2-234ENST00000557703 TTLL11Q8NHH1 800 aa17.23■□□□□ 0.35
SHMT2-234ENST00000557703 GRAPLQ8TC17 118 aaPredicted RBP17.23■□□□□ 0.35
SHMT2-234ENST00000557703 C7orf43Q8WVR3 580 aa17.23■□□□□ 0.35
SHMT2-234ENST00000557703 CDC5LQ99459 802 aaKnown RBP17.23■□□□□ 0.35
SHMT2-234ENST00000557703 USP44Q9H0E7 712 aa17.23■□□□□ 0.35
SHMT2-234ENST00000557703 RTL5Q5HYW3 569 aaPredicted RBP17.22■□□□□ 0.35
SHMT2-234ENST00000557703 DZIP1LQ8IYY4 767 aaKnown RBP17.22■□□□□ 0.35
SHMT2-234ENST00000557703 PELP1Q8IZL8 1130 aaKnown RBP17.22■□□□□ 0.35
SHMT2-234ENST00000557703 LTBP3Q9NS15 1303 aa17.21■□□□□ 0.35
SHMT2-234ENST00000557703 DDX60Q8IY21 1712 aaKnown RBP17.21■□□□□ 0.35
SHMT2-234ENST00000557703 RPS8P62241 208 aaKnown RBP17.21■□□□□ 0.35
SHMT2-234ENST00000557703 PDE3AQ14432 1141 aa17.21■□□□□ 0.35
SHMT2-234ENST00000557703 VPS33BQ9H267 617 aa17.21■□□□□ 0.35
SHMT2-234ENST00000557703 MYH3P11055 1940 aa17.21■□□□□ 0.35
SHMT2-234ENST00000557703 UTRNP46939 3433 aa17.21■□□□□ 0.34
SHMT2-234ENST00000557703 CCDC93Q567U6 631 aa17.2■□□□□ 0.34
SHMT2-234ENST00000557703 C3orf67Q6ZVT6 689 aa17.2■□□□□ 0.34
SHMT2-234ENST00000557703 SP8Q8IXZ3 490 aa17.2■□□□□ 0.34
SHMT2-234ENST00000557703 ATP6V0A2Q9Y487 856 aa17.2■□□□□ 0.34
SHMT2-234ENST00000557703 COL11A2P13942 1736 aaPredicted RBP17.2■□□□□ 0.34
SHMT2-234ENST00000557703 TNRC6CQ9HCJ0 1690 aaKnown RBP17.2■□□□□ 0.34
SHMT2-234ENST00000557703 NBPF7P0C2Y1 421 aaPredicted RBP17.19■□□□□ 0.34
SHMT2-234ENST00000557703 UBTFL1P0CB47 393 aaPredicted RBP17.19■□□□□ 0.34
SHMT2-234ENST00000557703 RABL6Q3YEC7 729 aaPredicted RBP17.19■□□□□ 0.34
SHMT2-234ENST00000557703 PPEF1O14829 653 aaPredicted RBP17.18■□□□□ 0.34
SHMT2-234ENST00000557703 FOXO4P98177 505 aa17.18■□□□□ 0.34
SHMT2-234ENST00000557703 ANKRD18AQ8IVF6 992 aa17.18■□□□□ 0.34
SHMT2-234ENST00000557703 PSMD1Q99460 953 aa17.18■□□□□ 0.34
SHMT2-234ENST00000557703 SLX4Q8IY92 1834 aa17.17■□□□□ 0.34
SHMT2-234ENST00000557703 C21orf2O43822 256 aa17.17■□□□□ 0.34
SHMT2-234ENST00000557703 IFIT5Q13325 482 aaKnown RBP17.17■□□□□ 0.34
SHMT2-234ENST00000557703 CCDC57Q2TAC2 916 aa17.17■□□□□ 0.34
SHMT2-234ENST00000557703 ARHGAP27Q6ZUM4 889 aa17.17■□□□□ 0.34
SHMT2-234ENST00000557703 SUPT20HQ8NEM7 779 aa17.17■□□□□ 0.34
SHMT2-234ENST00000557703 BSDC1Q9NW68 430 aaPredicted RBP17.17■□□□□ 0.34
SHMT2-234ENST00000557703 ANKRD18BA2A2Z9 1011 aa17.16■□□□□ 0.34
SHMT2-234ENST00000557703 IGHMBP2P38935 993 aaKnown RBP17.16■□□□□ 0.34
SHMT2-234ENST00000557703 LMBR1LQ6UX01 489 aa17.16■□□□□ 0.34
SHMT2-234ENST00000557703 JARID2Q92833 1246 aaPredicted RBP17.16■□□□□ 0.34
SHMT2-234ENST00000557703 CLUAP1Q96AJ1 413 aa17.16■□□□□ 0.34
SHMT2-234ENST00000557703 ZC3H4Q9UPT8 1303 aaKnown RBP17.16■□□□□ 0.34
SHMT2-234ENST00000557703 CHD4Q14839 1912 aa17.15■□□□□ 0.34
SHMT2-234ENST00000557703 ITGA6P23229 1130 aa17.15■□□□□ 0.34
SHMT2-234ENST00000557703 TMEM57Q8N5G2 664 aa17.15■□□□□ 0.34
SHMT2-234ENST00000557703 SUCLG2Q96I99 432 aa17.15■□□□□ 0.34
SHMT2-234ENST00000557703 TAOK3Q9H2K8 898 aa17.15■□□□□ 0.34
SHMT2-234ENST00000557703 GREM2Q9H772 168 aa17.15■□□□□ 0.34
SHMT2-234ENST00000557703 FBXO3Q9UK99 471 aa17.15■□□□□ 0.34
SHMT2-234ENST00000557703 GNAI2P04899 355 aa17.14■□□□□ 0.33
SHMT2-234ENST00000557703 LMNB1P20700 586 aa17.14■□□□□ 0.33
SHMT2-234ENST00000557703 FKBP4Q02790 459 aaKnown RBP eCLIP17.14■□□□□ 0.33
SHMT2-234ENST00000557703 CELF1Q92879 486 aaKnown RBP17.14■□□□□ 0.33
SHMT2-234ENST00000557703 KAZALD1Q96I82 304 aa17.14■□□□□ 0.33
SHMT2-234ENST00000557703 MPHOSPH8Q99549 860 aa17.14■□□□□ 0.33
SHMT2-234ENST00000557703 RTFDC1Q9BY42 306 aaPredicted RBP17.14■□□□□ 0.33
SHMT2-234ENST00000557703 PODXL2Q9NZ53 605 aa17.14■□□□□ 0.33
SHMT2-234ENST00000557703 DDX19BQ9UMR2 479 aa17.14■□□□□ 0.33
SHMT2-234ENST00000557703 MTX1Q13505 466 aa17.13■□□□□ 0.33
SHMT2-234ENST00000557703 ITPRIPQ8IWB1 547 aa17.13■□□□□ 0.33
SHMT2-234ENST00000557703 BICC1Q9H694 974 aaKnown RBP17.13■□□□□ 0.33
SHMT2-234ENST00000557703 SEC31BQ9NQW1 1179 aa17.13■□□□□ 0.33
SHMT2-234ENST00000557703 FER1L6Q2WGJ9 1857 aa17.12■□□□□ 0.33
SHMT2-234ENST00000557703 ZBTB7BO15156 539 aaPredicted RBP17.12■□□□□ 0.33
SHMT2-234ENST00000557703 MVPQ14764 893 aaKnown RBP17.12■□□□□ 0.33
SHMT2-234ENST00000557703 FAM161AQ3B820 660 aa17.12■□□□□ 0.33
SHMT2-234ENST00000557703 MPNDQ8N594 471 aa17.12■□□□□ 0.33
SHMT2-234ENST00000557703 MEIS3Q99687 375 aa17.12■□□□□ 0.33
SHMT2-234ENST00000557703 ANKRD2Q9GZV1 360 aa17.12■□□□□ 0.33
SHMT2-234ENST00000557703 WWC3Q9ULE0 1092 aa17.12■□□□□ 0.33
SHMT2-234ENST00000557703 NFKBIEO00221 500 aa17.11■□□□□ 0.33
SHMT2-234ENST00000557703 RLBP1P12271 317 aa17.11■□□□□ 0.33
SHMT2-234ENST00000557703 TAF7LQ5H9L4 462 aa17.11■□□□□ 0.33
SHMT2-234ENST00000557703 EPHA10Q5JZY3 1008 aa17.11■□□□□ 0.33
SHMT2-234ENST00000557703 DPP8Q6V1X1 898 aaPredicted RBP17.11■□□□□ 0.33
SHMT2-234ENST00000557703 SNED1Q8TER0 1413 aa17.11■□□□□ 0.33
SHMT2-234ENST00000557703 AAMPQ13685 434 aa17.1■□□□□ 0.33
SHMT2-234ENST00000557703 ANKRD44Q8N8A2 993 aa17.1■□□□□ 0.33
SHMT2-234ENST00000557703 EYA3Q99504 573 aa17.1■□□□□ 0.33
SHMT2-234ENST00000557703 CHMP3Q9Y3E7 222 aa17.1■□□□□ 0.33
SHMT2-234ENST00000557703 XDHP47989 1333 aa17.1■□□□□ 0.33
SHMT2-234ENST00000557703 LDHAL6AQ6ZMR3 332 aa17.09■□□□□ 0.33
SHMT2-234ENST00000557703 ZNF219Q9P2Y4 722 aaPredicted RBP17.09■□□□□ 0.33
SHMT2-234ENST00000557703 MINPP1Q9UNW1 487 aa17.09■□□□□ 0.33
SHMT2-234ENST00000557703 LEMD3Q9Y2U8 911 aa17.09■□□□□ 0.33
SHMT2-234ENST00000557703 LRRFIP2Q9Y608 721 aaKnown RBP17.09■□□□□ 0.33
SHMT2-234ENST00000557703 CACNA1SQ13698 1873 aa17.08■□□□□ 0.33
SHMT2-234ENST00000557703 LRRC37AA6NMS7 1700 aa17.08■□□□□ 0.32
SHMT2-234ENST00000557703 ATP2B4P23634 1241 aa17.08■□□□□ 0.32
SHMT2-234ENST00000557703 RRP1P56182 461 aaKnown RBP17.08■□□□□ 0.32
SHMT2-234ENST00000557703 PANK1Q8TE04 598 aa17.08■□□□□ 0.32
SHMT2-234ENST00000557703 CCDC85AQ96PX6 553 aaPredicted RBP17.08■□□□□ 0.32
SHMT2-234ENST00000557703 ANKIB1Q9P2G1 1089 aa17.08■□□□□ 0.32
SHMT2-234ENST00000557703 NSFL1CQ9UNZ2 370 aaKnown RBP17.08■□□□□ 0.32
SHMT2-234ENST00000557703 MROH5Q6ZUA9 1318 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 389.4 ms